| Year |
Citation |
Score |
| 2020 |
Lin Y, Cao Y, Kim HJ, Salim A, Speed TP, Lin DM, Yang P, Yang JYH. scClassify: sample size estimation and multiscale classification of cells using single and multiple reference. Molecular Systems Biology. 16: e9389. PMID 32567229 DOI: 10.15252/msb.20199389 |
0.462 |
|
| 2019 |
Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang JYH, Yang P. Evaluating stably expressed genes in single cells. Gigascience. 8. PMID 31531674 DOI: 10.1093/Gigascience/Giz106 |
0.558 |
|
| 2019 |
Savas P, Virassamy B, Ye C, Salim A, Mintoff C, Caramia F, Salgado R, Teo Z, Dushyanthen S, Byrne A, Luen S, Fox S, Speed T, Mackay L, Neeson P, et al. Abstract PD5-03: Characterization of high TIL breast cancers reveals a prognostic and functionally distinct tissue-resident memory subpopulation Cancer Research. 79. DOI: 10.1158/1538-7445.Sabcs18-Pd5-03 |
0.522 |
|
| 2016 |
Zhang Y, Feng ZP, Naselli G, Bell F, Wettenhall J, Auyeung P, Ellis JA, Ponsonby AL, Speed TP, Chong MM, Harrison LC. Corrigendum to 'MicroRNAs in CD4(+) T cell subsets are markers of disease risk and T cell dysfunction in individuals at risk for type 1 diabetes' [J. Autoimmun. 68C (2016) 52-61]. Journal of Autoimmunity. PMID 27134182 DOI: 10.1016/J.Jaut.2016.04.002 |
0.409 |
|
| 2016 |
Xin A, Masson F, Liao Y, Preston S, Guan T, Gloury R, Olshansky M, Lin JX, Li P, Speed TP, Smyth GK, Ernst M, Leonard WJ, Pellegrini M, Kaech SM, et al. A molecular threshold for effector CD8(+) T cell differentiation controlled by transcription factors Blimp-1 and T-bet. Nature Immunology. PMID 26950239 DOI: 10.1038/Ni.3410 |
0.44 |
|
| 2016 |
Zhang Y, Feng ZP, Naselli G, Bell F, Wettenhall J, Auyeung P, Ellis JA, Ponsonby AL, Speed TP, Chong MM, Harrison LC. MicroRNAs in CD4(+) T cell subsets are markers of disease risk and T cell dysfunction in individuals at risk for type 1 diabetes. Journal of Autoimmunity. PMID 26786119 DOI: 10.1016/J.Jaut.2015.12.006 |
0.433 |
|
| 2016 |
Quaglieri A, Speed T, Majewski I. Finding optimal coverage F1000research. 5. DOI: 10.7490/F1000Research.1113342.1 |
0.447 |
|
| 2016 |
Jacob L, Gagnon-Bartsch JA, Speed TP. Correcting gene expression data when neither the unwanted variation nor the factor of interest are observed Biostatistics. 17: 16-28. DOI: 10.1093/biostatistics/kxv026 |
0.507 |
|
| 2015 |
Huang KT, Mikeska T, Li J, Takano EA, Millar EK, Graham PH, Boyle SE, Campbell IG, Speed TP, Dobrovic A, Fox SB. Assessment of DNA methylation profiling and copy number variation as indications of clonal relationship in ipsilateral and contralateral breast cancers to distinguish recurrent breast cancer from a second primary tumour. Bmc Cancer. 15: 669. PMID 26452468 DOI: 10.1186/s12885-015-1676-0 |
0.419 |
|
| 2015 |
Peixoto L, Risso D, Poplawski SG, Wimmer ME, Speed TP, Wood MA, Abel T. How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets. Nucleic Acids Research. 43: 7664-74. PMID 26202970 DOI: 10.1093/Nar/Gkv736 |
0.483 |
|
| 2015 |
De Livera AM, Sysi-Aho M, Jacob L, Gagnon-Bartsch JA, Castillo S, Simpson JA, Speed TP. Statistical methods for handling unwanted variation in metabolomics data. Analytical Chemistry. 87: 3606-15. PMID 25692814 DOI: 10.1021/ac502439y |
0.435 |
|
| 2015 |
Freytag S, Gagnon-Bartsch J, Speed TP, Bahlo M. Systematic noise degrades gene co-expression signals but can be corrected Bmc Bioinformatics. 16. DOI: 10.1186/s12859-015-0745-3 |
0.506 |
|
| 2015 |
Maksimovic J, Gagnon-Bartsch JA, Speed TP, Oshlack A. Removing unwanted variation in a differential methylation analysis of Illumina Human Methylation 450 array data Nucleic Acids Research. 43. DOI: 10.1093/nar/gkv526 |
0.474 |
|
| 2014 |
Russ BE, Olshanksy M, Smallwood HS, Li J, Denton AE, Prier JE, Stock AT, Croom HA, Cullen JG, Nguyen ML, Rowe S, Olson MR, Finkelstein DB, Kelso A, Thomas PG, Speed TP, et al. Distinct epigenetic signatures delineate transcriptional programs during virus-specific CD8(+) T cell differentiation. Immunity. 41: 853-65. PMID 25517617 DOI: 10.1016/j.immuni.2014.11.001 |
0.425 |
|
| 2014 |
Lin SJ, Gagnon-Bartsch JA, Tan IB, Earle S, Ruff L, Pettinger K, Ylstra B, van Grieken N, Rha SY, Chung HC, Lee JS, Cheong JH, Noh SH, Aoyama T, Miyagi Y, ... Speed TP, et al. Signatures of tumour immunity distinguish Asian and non-Asian gastric adenocarcinomas. Gut. PMID 25385008 DOI: 10.1136/gutjnl-2014-308252 |
0.391 |
|
| 2014 |
Lönnstedt IM, Caramia F, Li J, Fumagalli D, Salgado R, Rowan A, Salm M, Kanu N, Savas P, Horswell S, Gade S, Loibl S, Neven P, Sotiriou C, Swanton C, ... Speed TP, et al. Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data. Genome Biology. 15: 470. PMID 25270265 DOI: 10.1186/S13059-014-0470-7 |
0.462 |
|
| 2014 |
Risso D, Ngai J, Speed TP, Dudoit S. Normalization of RNA-seq data using factor analysis of control genes or samples. Nature Biotechnology. 32: 896-902. PMID 25150836 DOI: 10.1038/Nbt.2931 |
0.483 |
|
| 2014 |
Kim SY, Jacob L, Speed TP. Combining calls from multiple somatic mutation-callers Bmc Bioinformatics. 15. PMID 24885750 DOI: 10.1186/1471-2105-15-154 |
0.436 |
|
| 2014 |
Gandolfo LC, Bahlo M, Speed TP. Dating rare mutations from small samples with dense marker data Genetics. 197: 1315-1327. PMID 24879464 DOI: 10.1534/genetics.114.164616 |
0.448 |
|
| 2014 |
Ferreira T, Wilson SR, Choi YG, Risso D, Dudoit S, Speed TP, Ngai J. Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron. Neuron. 81: 847-59. PMID 24559675 DOI: 10.1016/J.Neuron.2014.01.001 |
0.448 |
|
| 2014 |
Chandrananda D, Thorne NP, Ganesamoorthy D, Bruno DL, Benjamini Y, Speed TP, Slater HR, Bahlo M. Investigating and correcting plasma DNA sequencing coverage bias to enhance aneuploidy discovery. Plos One. 9: e86993. PMID 24489824 DOI: 10.1371/Journal.Pone.0086993 |
0.642 |
|
| 2014 |
Russ BE, Olshanksy M, Smallwood HS, Li J, Denton AE, Prier JE, Stock AT, Croom HA, Cullen JG, Nguyen MLT, Rowe S, Olson MR, Finkelstein DB, Kelso A, Thomas PG, Speed TP, et al. Distinct epigenetic signatures delineate transcriptional programs during virus-specific CD8+ T cell differentiation Immunity. 41: 1064. DOI: 10.1016/j.immuni.2014.12.013 |
0.425 |
|
| 2013 |
Olive V, Sabio E, Bennett MJ, De Jong CS, Biton A, McGann JC, Greaney SK, Sodir NM, Zhou AY, Balakrishnan A, Foth M, Luftig MA, Goga A, Speed TP, Xuan Z, et al. A component of the mir-17-92 polycistronic oncomir promotes oncogene-dependent apoptosis. Elife. 2: e00822. PMID 24137534 DOI: 10.7554/Elife.00822 |
0.39 |
|
| 2013 |
Koepfli C, Colborn KL, Kiniboro B, Lin E, Speed TP, Siba PM, Felger I, Mueller I. A high force of plasmodium vivax blood-stage infection drives the rapid acquisition of immunity in papua new guinean children. Plos Neglected Tropical Diseases. 7: e2403. PMID 24040428 DOI: 10.1371/journal.pntd.0002403 |
0.398 |
|
| 2013 |
De Livera AM, Olshansky M, Speed TP. Statistical analysis of metabolomics data Methods in Molecular Biology. 1055: 291-307. PMID 23963918 DOI: 10.1007/978-1-62703-577-4-20 |
0.44 |
|
| 2013 |
Kim SY, Speed TP. Comparing somatic mutation-callers: Beyond Venn diagrams Bmc Bioinformatics. 14. PMID 23758877 DOI: 10.1186/1471-2105-14-189 |
0.462 |
|
| 2013 |
Greening DW, Kapp EA, Ji H, Speed TP, Simpson RJ. Colon tumour secretopeptidome: insights into endogenous proteolytic cleavage events in the colon tumour microenvironment. Biochimica Et Biophysica Acta. 1834: 2396-407. PMID 23684732 DOI: 10.1016/J.Bbapap.2013.05.006 |
0.425 |
|
| 2013 |
Ross DM, O'Hely M, Bartley PA, Dang P, Score J, Goyne JM, Sobrinho-Simoes M, Cross NC, Melo JV, Speed TP, Hughes TP, Morley AA. Distribution of genomic breakpoints in chronic myeloid leukemia: analysis of 308 patients. Leukemia. 27: 2105-7. PMID 23588714 DOI: 10.1038/Leu.2013.116 |
0.484 |
|
| 2013 |
Masson F, Minnich M, Olshansky M, Bilic I, Mount AM, Kallies A, Speed TP, Busslinger M, Nutt SL, Belz GT. Id2-mediated inhibition of E2A represses memory CD8+ T cell differentiation Journal of Immunology. 190: 4585-4594. PMID 23536629 DOI: 10.4049/Jimmunol.1300099 |
0.432 |
|
| 2013 |
Zhang Y, Mayba O, Pfeiffer A, Shi H, Tepperman JM, Speed TP, Quail PH. A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis Plos Genetics. 9. PMID 23382695 DOI: 10.1371/Journal.Pgen.1003244 |
0.517 |
|
| 2013 |
Pham K, Shimoni R, Ludford-Menting MJ, Nowell CJ, Lobachevsky P, Bomzon Z, Gu M, Speed TP, McGlade CJ, Russell SM. Divergent lymphocyte signalling revealed by a powerful new tool for analysis of time-lapse microscopy. Immunology and Cell Biology. 91: 70-81. PMID 23032369 DOI: 10.1038/Icb.2012.49 |
0.421 |
|
| 2013 |
Binz N, Ali Rahman IS, Chinnery HR, McKeone R, Simpson KM, Speed TP, Lai CM, Rakoczy PE. Effect of vascular endothelial growth factor upregulation on retinal gene expression in the Kimba mouse Clinical and Experimental Ophthalmology. 41: 251-262. PMID 22788671 DOI: 10.1111/j.1442-9071.2012.02845.x |
0.453 |
|
| 2012 |
De Livera AM, Dias DA, De Souza D, Rupasinghe T, Pyke J, Tull D, Roessner U, McConville M, Speed TP. Normalizing and integrating metabolomics data. Analytical Chemistry. 84: 10768-76. PMID 23150939 DOI: 10.1021/ac302748b |
0.417 |
|
| 2012 |
Couvillion MT, Bounova G, Purdom E, Speed TP, Collins K. A Tetrahymena Piwi bound to mature tRNA 3' fragments activates the exonuclease Xrn2 for RNA processing in the nucleus. Molecular Cell. 48: 509-20. PMID 23084833 DOI: 10.1016/J.Molcel.2012.09.010 |
0.426 |
|
| 2012 |
Zuccala ES, Gout AM, Dekiwadia C, Marapana DS, Angrisano F, Turnbull L, Riglar DT, Rogers KL, Whitchurch CB, Ralph SA, Speed TP, Baum J. Subcompartmentalisation of proteins in the rhoptries correlates with ordered events of erythrocyte invasion by the blood stage malaria parasite. Plos One. 7: e46160. PMID 23049965 DOI: 10.1371/journal.pone.0046160 |
0.4 |
|
| 2012 |
Hill SM, Lu Y, Molina J, Heiser LM, Spellman PT, Speed TP, Gray JW, Mills GB, Mukherjee S. Bayesian inference of signaling network topology in a cancer cell line. Bioinformatics (Oxford, England). 28: 2804-10. PMID 22923301 DOI: 10.1093/Bioinformatics/Bts514 |
0.425 |
|
| 2012 |
Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likić VA, Lithgow T. A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters. Plos One. 7: e43245. PMID 22905239 DOI: 10.1371/journal.pone.0043245 |
0.416 |
|
| 2012 |
Robinson MD, Strbenac D, Stirzaker C, Statham AL, Song J, Speed TP, Clark SJ. Copy-number-aware differential analysis of quantitative DNA sequencing data. Genome Research. 22: 2489-96. PMID 22879430 DOI: 10.1101/gr.139055.112 |
0.46 |
|
| 2012 |
Kerr JB, Hutt KJ, Cook M, Speed TP, Strasser A, Findlay JK, Scott CL. Cisplatin-induced primordial follicle oocyte killing and loss of fertility are not prevented by imatinib. Nature Medicine. 18: 1170-2; author reply. PMID 22869179 DOI: 10.1038/nm.2889 |
0.382 |
|
| 2012 |
Kuo T, Lew MJ, Mayba O, Harris CA, Speed TP, Wang JC. Genome-wide analysis of glucocorticoid receptor-binding sites in myotubes identifies gene networks modulating insulin signaling. Proceedings of the National Academy of Sciences of the United States of America. 109: 11160-5. PMID 22733784 DOI: 10.1073/Pnas.1111334109 |
0.478 |
|
| 2012 |
Mueller I, Schoepflin S, Smith TA, Benton KL, Bretscher MT, Lin E, Kiniboro B, Zimmerman PA, Speed TP, Siba P, Felger I. Force of infection is key to understanding the epidemiology of Plasmodium falciparum malaria in Papua New Guinean children. Proceedings of the National Academy of Sciences of the United States of America. 109: 10030-5. PMID 22665809 DOI: 10.1073/pnas.1200841109 |
0.394 |
|
| 2012 |
Zhang N, Xu Y, O'Hely M, Speed TP, Scharfe C, Wang W. SRMA: an R package for resequencing array data analysis. Bioinformatics (Oxford, England). 28: 1928-30. PMID 22581181 DOI: 10.1093/bioinformatics/bts286 |
0.418 |
|
| 2012 |
Feng ZP, Chandrashekaran IR, Low A, Speed TP, Nicholson SE, Norton RS. The N-terminal domains of SOCS proteins: a conserved region in the disordered N-termini of SOCS4 and 5. Proteins. 80: 946-57. PMID 22423360 DOI: 10.1002/prot.23252 |
0.391 |
|
| 2012 |
Benjamini Y, Speed TP. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Research. 40: e72. PMID 22323520 DOI: 10.1093/Nar/Gks001 |
0.653 |
|
| 2012 |
Leitman DC, Paruthiyil S, Yuan C, Herber CB, Olshansky M, Tagliaferri M, Cohen I, Speed TP. Tissue-specific regulation of genes by estrogen receptors. Seminars in Reproductive Medicine. 30: 14-22. PMID 22271290 DOI: 10.1055/s-0031-1299593 |
0.462 |
|
| 2012 |
Wilkins EJ, Rubio JP, Kotschet KE, Cowie TF, Boon WC, O'Hely M, Burfoot R, Wang W, Sue CM, Speed TP, Stankovitch J, Horne MK. A DNA resequencing array for genes involved in Parkinson's disease. Parkinsonism & Related Disorders. 18: 386-90. PMID 22243833 DOI: 10.1016/j.parkreldis.2011.12.012 |
0.452 |
|
| 2012 |
Gagnon-Bartsch JA, Speed TP. Using control genes to correct for unwanted variation in microarray data Biostatistics. 13: 539-552. PMID 22101192 DOI: 10.1093/biostatistics/kxr034 |
0.482 |
|
| 2012 |
Heiser LM, Sadanandam A, Kuo WL, Benz SC, Goldstein TC, Ng S, Gibb WJ, Wang NJ, Ziyad S, Tong F, Bayani N, Hu Z, Billig JI, Dueregger A, Lewis S, ... Speed TP, et al. Subtype and pathway specific responses to anticancer compounds in breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 109: 2724-9. PMID 22003129 DOI: 10.1073/Pnas.1018854108 |
0.438 |
|
| 2011 |
Saunier EF, Vivar OI, Rubenstein A, Zhao X, Olshansky M, Baggett S, Staub RE, Tagliaferri M, Cohen I, Speed TP, Baxter JD, Leitman DC. Estrogenic plant extracts reverse weight gain and fat accumulation without causing mammary gland or uterine proliferation. Plos One. 6: e28333. PMID 22163294 DOI: 10.1371/Journal.Pone.0028333 |
0.426 |
|
| 2011 |
Shen P, Wang W, Krishnakumar S, Palm C, Chi AK, Enns GM, Davis RW, Speed TP, Mindrinos MN, Scharfe C. High-quality DNA sequence capture of 524 disease candidate genes. Proceedings of the National Academy of Sciences of the United States of America. 108: 6549-54. PMID 21467225 DOI: 10.1073/Pnas.1018981108 |
0.494 |
|
| 2011 |
Lee EF, Clarke OB, Evangelista M, Feng Z, Speed TP, Tchoubrieva EB, Strasser A, Kalinna BH, Colman PM, Fairlie WD. Discovery and molecular characterization of a Bcl-2-regulated cell death pathway in schistosomes. Proceedings of the National Academy of Sciences of the United States of America. 108: 6999-7003. PMID 21444803 DOI: 10.1073/pnas.1100652108 |
0.425 |
|
| 2011 |
Wang XV, Verhaak RG, Purdom E, Spellman PT, Speed TP. Unifying gene expression measures from multiple platforms using factor analysis. Plos One. 6: e17691. PMID 21436879 DOI: 10.1371/Journal.Pone.0017691 |
0.502 |
|
| 2011 |
White S, Ohnesorg T, Notini A, Roeszler K, Hewitt J, Daggag H, Smith C, Turbitt E, Gustin S, van den Bergen J, Miles D, Western P, Arboleda V, Schumacher V, Gordon L, ... ... Speed T, et al. Copy number variation in patients with disorders of sex development due to 46,XY gonadal dysgenesis. Plos One. 6: e17793. PMID 21408189 DOI: 10.1371/Journal.Pone.0017793 |
0.35 |
|
| 2011 |
Lopaticki S, Maier AG, Thompson J, Wilson DW, Tham WH, Triglia T, Gout A, Speed TP, Beeson JG, Healer J, Cowman AF. Reticulocyte and erythrocyte binding-like proteins function cooperatively in invasion of human erythrocytes by malaria parasites. Infection and Immunity. 79: 1107-17. PMID 21149582 DOI: 10.1128/Iai.01021-10 |
0.451 |
|
| 2011 |
Wang W, Shen P, Thiyagarajan S, Lin S, Palm C, Horvath R, Klopstock T, Cutler D, Pique L, Schrijver I, Davis RW, Mindrinos M, Speed TP, Scharfe C. Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing. Nucleic Acids Research. 39: 44-58. PMID 20843780 DOI: 10.1093/Nar/Gkq750 |
0.474 |
|
| 2010 |
Robinson MD, Statham AL, Speed TP, Clark SJ. Protocol matters: which methylome are you actually studying? Epigenomics. 2: 587-98. PMID 21566704 DOI: 10.2217/epi.10.36 |
0.388 |
|
| 2010 |
Yu CY, Mayba O, Lee JV, Tran J, Harris C, Speed TP, Wang JC. Genome-wide analysis of glucocorticoid receptor binding regions in adipocytes reveal gene network involved in triglyceride homeostasis. Plos One. 5: e15188. PMID 21187916 DOI: 10.1371/Journal.Pone.0015188 |
0.512 |
|
| 2010 |
Tan IK, Mackin L, Wang N, Papenfuss AT, Elso CM, Ashton MP, Quirk F, Phipson B, Bahlo M, Speed TP, Smyth GK, Morahan G, Brodnicki TC. A recombination hotspot leads to sequence variability within a novel gene (AK005651) and contributes to type 1 diabetes susceptibility. Genome Research. 20: 1629-38. PMID 21051460 DOI: 10.1101/gr.101881.109 |
0.453 |
|
| 2010 |
Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ. Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation. Genome Research. 20: 1719-29. PMID 21045081 DOI: 10.1101/gr.110601.110 |
0.449 |
|
| 2010 |
Leitman DC, Paruthiyil S, Vivar OI, Saunier EF, Herber CB, Cohen I, Tagliaferri M, Speed TP. Regulation of specific target genes and biological responses by estrogen receptor subtype agonists. Current Opinion in Pharmacology. 10: 629-36. PMID 20951642 DOI: 10.1016/J.Coph.2010.09.009 |
0.475 |
|
| 2010 |
Speca DJ, Chihara D, Ashique AM, Bowers MS, Pierce-Shimomura JT, Lee J, Rabbee N, Speed TP, Gularte RJ, Chitwood J, Medrano JF, Liao M, Sonner JM, Eger EI, Peterson AS, et al. Conserved role of unc-79 in ethanol responses in lightweight mutant mice. Plos Genetics. 6. PMID 20714347 DOI: 10.1371/Journal.Pgen.1001057 |
0.413 |
|
| 2010 |
Lapuk A, Marr H, Jakkula L, Pedro H, Bhattacharya S, Purdom E, Hu Z, Simpson K, Pachter L, Durinck S, Wang N, Parvin B, Fontenay G, Speed T, Garbe J, et al. Exon-level microarray analyses identify alternative splicing programs in breast cancer. Molecular Cancer Research : McR. 8: 961-74. PMID 20605923 DOI: 10.1158/1541-7786.Mcr-09-0528 |
0.523 |
|
| 2010 |
Loi S, Haibe-Kains B, Majjaj S, Lallemand F, Durbecq V, Larsimont D, Gonzalez-Angulo AM, Pusztai L, Symmans WF, Bardelli A, Ellis P, Tutt AN, Gillett CE, Hennessy BT, Mills GB, ... Speed TP, et al. PIK3CA mutations associated with gene signature of low mTORC1 signaling and better outcomes in estrogen receptor-positive breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 107: 10208-13. PMID 20479250 DOI: 10.1073/pnas.0907011107 |
0.447 |
|
| 2010 |
Bengtsson H, Neuvial P, Speed TP. TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays Bmc Bioinformatics. 11. PMID 20462408 DOI: 10.1186/1471-2105-11-245 |
0.459 |
|
| 2010 |
Carmichael CL, Wilkins EJ, Bengtsson H, Horwitz MS, Speed TP, Vincent PC, Young G, Hahn CN, Escher R, Scott HS. Poor prognosis in familial acute myeloid leukaemia with combined biallelic CEBPA mutations and downstream events affecting the ATM, FLT3 and CDX2 genes. British Journal of Haematology. 150: 382-5. PMID 20456351 DOI: 10.1111/j.1365-2141.2010.08204.x |
0.441 |
|
| 2010 |
Vivar OI, Zhao X, Saunier EF, Griffin C, Mayba OS, Tagliaferri M, Cohen I, Speed TP, Leitman DC. Estrogen receptor beta binds to and regulates three distinct classes of target genes. The Journal of Biological Chemistry. 285: 22059-66. PMID 20404318 DOI: 10.1074/Jbc.M110.114116 |
0.495 |
|
| 2010 |
Ramakrishna M, Williams LH, Boyle SE, Bearfoot JL, Sridhar A, Speed TP, Gorringe KL, Campbell IG. Identification of candidate growth promoting genes in ovarian cancer through integrated copy number and expression analysis. Plos One. 5: e9983. PMID 20386695 DOI: 10.1371/journal.pone.0009983 |
0.481 |
|
| 2010 |
Coolen MW, Stirzaker C, Song JZ, Statham AL, Kassir Z, Moreno CS, Young AN, Varma V, Speed TP, Cowley M, Lacaze P, Kaplan W, Robinson MD, Clark SJ. Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity. Nature Cell Biology. 12: 235-46. PMID 20173741 DOI: 10.1038/ncb2023 |
0.481 |
|
| 2010 |
Verhaak RG, Hoadley KA, Purdom E, Wang V, Qi Y, Wilkerson MD, Miller CR, Ding L, Golub T, Mesirov JP, Alexe G, Lawrence M, O'Kelly M, Tamayo P, Weir BA, ... Speed TP, et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell. 17: 98-110. PMID 20129251 DOI: 10.1016/J.Ccr.2009.12.020 |
0.503 |
|
| 2010 |
Levy N, Paruthiyil S, Zhao X, Vivar OI, Saunier EF, Griffin C, Tagliaferri M, Cohen I, Speed TP, Leitman DC. Unliganded estrogen receptor-beta regulation of genes is inhibited by tamoxifen. Molecular and Cellular Endocrinology. 315: 201-7. PMID 19744542 DOI: 10.1016/j.mce.2009.08.030 |
0.441 |
|
| 2010 |
Mukherjee S, Speed TP, Hill SM. Model Averaging for Biological Networks with Prior Information Medical Biostatistics For Complex Diseases. 347-372. DOI: 10.1002/9783527630332.ch17 |
0.398 |
|
| 2009 |
Irizarry RA, Wang C, Zhou Y, Speed TP. Gene set enrichment analysis made simple. Statistical Methods in Medical Research. 18: 565-75. PMID 20048385 DOI: 10.1177/0962280209351908 |
0.506 |
|
| 2009 |
Ge Y, Sealfon SC, Speed TP. Multiple testing and its applications to microarrays. Statistical Methods in Medical Research. 18: 543-63. PMID 20048384 DOI: 10.1177/0962280209351899 |
0.458 |
|
| 2009 |
Sui Y, Zhao X, Speed TP, Wu Z. Background adjustment for DNA microarrays using a database of microarray experiments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1501-15. PMID 19958080 DOI: 10.1089/Cmb.2009.0063 |
0.464 |
|
| 2009 |
Powell JA, Thomas D, Barry EF, Kok CH, McClure BJ, Tsykin A, To LB, Brown A, Lewis ID, Herbert K, Goodall GJ, Speed TP, Asou N, Jacob B, Osato M, et al. Expression profiling of a hemopoietic cell survival transcriptome implicates osteopontin as a functional prognostic factor in AML. Blood. 114: 4859-70. PMID 19805619 DOI: 10.1182/Blood-2009-02-204818 |
0.484 |
|
| 2009 |
Paruthiyil S, Cvoro A, Zhao X, Wu Z, Sui Y, Staub RE, Baggett S, Herber CB, Griffin C, Tagliaferri M, Harris HA, Cohen I, Bjeldanes LF, Speed TP, Schaufele F, et al. Drug and cell type-specific regulation of genes with different classes of estrogen receptor beta-selective agonists. Plos One. 4: e6271. PMID 19609440 DOI: 10.1371/Journal.Pone.0006271 |
0.468 |
|
| 2009 |
Bengtsson H, Wirapati P, Speed TP. A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6 Bioinformatics. 25: 2149-2156. PMID 19535535 DOI: 10.1093/bioinformatics/btp371 |
0.466 |
|
| 2009 |
Robinson MD, Speed TP. Differential splicing using whole-transcript microarrays Bmc Bioinformatics. 10. PMID 19463149 DOI: 10.1186/1471-2105-10-156 |
0.517 |
|
| 2009 |
Tonkin CJ, Carret CK, Duraisingh MT, Voss TS, Ralph SA, Hommel M, Duffy MF, Silva LM, Scherf A, Ivens A, Speed TP, Beeson JG, Cowman AF. Sir2 paralogues cooperate to regulate virulence genes and antigenic variation in Plasmodium falciparum. Plos Biology. 7: e84. PMID 19402747 DOI: 10.1371/Journal.Pbio.1000084 |
0.49 |
|
| 2009 |
Bengtsson H, Ray A, Spellman P, Speed TP. A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods Bioinformatics. 25: 861-867. PMID 19193730 DOI: 10.1093/Bioinformatics/Btp074 |
0.446 |
|
| 2009 |
Chandran D, Tai YC, Hather G, Dewdney J, Denoux C, Burgess DG, Ausubel FM, Speed TP, Wildermuth MC. Temporal global expression data reveal known and novel salicylate-impacted processes and regulators mediating powdery mildew growth and reproduction on Arabidopsis. Plant Physiology. 149: 1435-51. PMID 19176722 DOI: 10.1104/Pp.108.132985 |
0.766 |
|
| 2009 |
Pask AJ, Papenfuss AT, Ager EI, McColl KA, Speed TP, Renfree MB. Analysis of the platypus genome suggests a transposon origin for mammalian imprinting Genome Biology. 10: R1. PMID 19121219 DOI: 10.1186/Gb-2009-10-1-R1 |
0.483 |
|
| 2009 |
Ball LJ, Levy N, Zhao X, Griffin C, Tagliaferri M, Cohen I, Ricke WA, Speed TP, Firestone GL, Leitman DC. Cell type- and estrogen receptor-subtype specific regulation of selective estrogen receptor modulator regulatory elements. Molecular and Cellular Endocrinology. 299: 204-11. PMID 19059307 DOI: 10.1016/J.Mce.2008.10.050 |
0.459 |
|
| 2009 |
Mukherjee S, Pelech S, Neve RM, Kuo WL, Ziyad S, Spellman PT, Gray JW, Speed TP. Sparse combinatorial inference with an application in cancer biology. Bioinformatics (Oxford, England). 25: 265-71. PMID 19038985 DOI: 10.1093/Bioinformatics/Btn611 |
0.442 |
|
| 2009 |
Tai YC, Speed TP. On gene ranking using replicated microarray time course data. Biometrics. 65: 40-51. PMID 18537947 DOI: 10.1111/j.1541-0420.2008.01057.x |
0.481 |
|
| 2009 |
Loi S, Sotiriou C, Haibe-Kains B, Lallemand F, Conus NM, Piccart MJ, Speed TP, McArthur GA. Gene expression profiling identifies activated growth factor signaling in poor prognosis (Luminal-B) estrogen receptor positive breast cancer Bmc Medical Genomics. 2. DOI: 10.1186/1755-8794-2-37 |
0.496 |
|
| 2008 |
Mukherjee S, Speed TP. Network inference using informative priors Proceedings of the National Academy of Sciences of the United States of America. 105: 14313-14318. PMID 18799736 DOI: 10.1073/pnas.0802272105 |
0.389 |
|
| 2008 |
Michaud J, Simpson KM, Escher R, Buchet-Poyau K, Beissbarth T, Carmichael C, Ritchie ME, Schütz F, Cannon P, Liu M, Shen X, Ito Y, Raskind WH, Horwitz MS, Osato M, ... Speed TP, et al. Integrative analysis of RUNX1 downstream pathways and target genes. Bmc Genomics. 9: 363. PMID 18671852 DOI: 10.1186/1471-2164-9-363 |
0.468 |
|
| 2008 |
Rubio JP, Stankovich J, Field J, Tubridy N, Marriott M, Chapman C, Bahlo M, Perera D, Johnson LJ, Tait BD, Varney MD, Speed TP, Taylor BV, Foote SJ, Butzkueven H, et al. Replication of KIAA0350, IL2RA, RPL5 and CD58 as multiple sclerosis susceptibility genes in Australians Genes and Immunity. 9: 624-630. PMID 18650830 DOI: 10.1038/Gene.2008.59 |
0.464 |
|
| 2008 |
Purdom E, Simpson KM, Robinson MD, Conboy JG, Lapuk AV, Speed TP. FIRMA: A method for detection of alternative splicing from exon array data Bioinformatics. 24: 1707-1714. PMID 18573797 DOI: 10.1093/Bioinformatics/Btn284 |
0.483 |
|
| 2008 |
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, ... Speed TP, et al. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. Plos Biology. 6: e27. PMID 18271625 DOI: 10.1371/Journal.Pbio.0060027 |
0.487 |
|
| 2008 |
Bengtsson H, Irizarry R, Carvalho B, Speed TP. Estimation and assessment of raw copy numbers at the single locus level Bioinformatics. 24: 759-767. PMID 18204055 DOI: 10.1093/Bioinformatics/Btn016 |
0.476 |
|
| 2008 |
Burfoot RK, Jensen CJ, Field J, Stankovich J, Varney MD, Johnson LJ, Butzkueven H, Booth D, Bahlo M, Tait BD, Taylor BV, Speed TP, Heard R, Stewart GJ, Foote SJ, et al. SNP mapping and candidate gene sequencing in the class I region of the HLA complex: searching for multiple sclerosis susceptibility genes in Tasmanians. Tissue Antigens. 71: 42-50. PMID 17971048 DOI: 10.1111/J.1399-0039.2007.00962.X |
0.463 |
|
| 2008 |
Levy N, Tatomer D, Herber CB, Zhao X, Tang H, Sargeant T, Ball LJ, Summers J, Speed TP, Leitman DC. Differential regulation of native estrogen receptor-regulatory elements by estradiol, tamoxifen, and raloxifene. Molecular Endocrinology (Baltimore, Md.). 22: 287-303. PMID 17962382 DOI: 10.1210/me.2007-0340 |
0.424 |
|
| 2008 |
Guipponi M, Toh MY, Tan J, Park D, Hanson K, Ballana E, Kwong D, Cannon PZ, Wu Q, Gout A, Delorenzi M, Speed TP, Smith RJ, Dahl HH, Petersen M, et al. An integrated genetic and functional analysis of the role of type II transmembrane serine proteases (TMPRSSs) in hearing loss. Human Mutation. 29: 130-41. PMID 17918732 DOI: 10.1002/Humu.20617 |
0.416 |
|
| 2008 |
Hallgrímsdóttir IB, Speed TP. The power of two-locus affected sib-pair linkage analysis to detect interacting disease loci Genetic Epidemiology. 32: 84-88. PMID 17654608 DOI: 10.1002/gepi.20254 |
0.453 |
|
| 2008 |
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Hou CC, Ogawa N, Inwood W, Sementchenko V, Beaton A, ... Speed TP, et al. Correction: Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm (PLoS Biology (2008) 6,2 (e27) DOI: 10.1371/journal.pbio.0060027) Plos Biology. 6: 1600. DOI: 10.1371/Journal.Pbio.0060190 |
0.425 |
|
| 2008 |
Brettschneider J, Collin F, Bolstad B, Speed T. Rejoinder Technometrics. 50: 279-283. DOI: 10.1198/004017008000000389 |
0.371 |
|
| 2008 |
Brettschneider J, Bolstad B, Collin F, Speed T. Quality assessment for short oligonucleotide microarray data Technometrics. 50: 241-264. DOI: 10.1198/004017008000000334 |
0.433 |
|
| 2007 |
Szpara ML, Vranizan K, Tai YC, Goodman CS, Speed TP, Ngai J. Analysis of gene expression during neurite outgrowth and regeneration. Bmc Neuroscience. 8: 100. PMID 18036227 DOI: 10.1186/1471-2202-8-100 |
0.456 |
|
| 2007 |
Robinson MD, Speed TP. A comparison of affymetrix gene expression arrays Bmc Bioinformatics. 8. PMID 18005448 DOI: 10.1186/1471-2105-8-449 |
0.515 |
|
| 2007 |
Georlette D, Ahn S, MacAlpine DM, Cheung E, Lewis PW, Beall EL, Bell SP, Speed T, Manak JR, Botchan MR. Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells. Genes & Development. 21: 2880-96. PMID 17978103 DOI: 10.1101/Gad.1600107 |
0.573 |
|
| 2007 |
Robinson MD, De Souza DP, Keen WW, Saunders EC, McConville MJ, Speed TP, Likić VA. A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments Bmc Bioinformatics. 8. PMID 17963529 DOI: 10.1186/1471-2105-8-419 |
0.447 |
|
| 2007 |
McCoubrie JE, Miller SK, Sargeant T, Good RT, Hodder AN, Speed TP, De Koning-Ward TF, Crabb BS. Evidence for a common role for the serine-type Plasmodium falciparum serine repeat antigen proteases: Implications for vaccine and drug design Infection and Immunity. 75: 5565-5574. PMID 17893128 DOI: 10.1128/IAI.00405-07 |
0.402 |
|
| 2007 |
Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, ... Speed TP, et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447: 167-77. PMID 17495919 DOI: 10.1038/Nature05805 |
0.478 |
|
| 2007 |
Belov K, Sanderson CE, Deakin JE, Wong ES, Assange D, McColl KA, Gout A, de Bono B, Barrow AD, Speed TP, Trowsdale J, Papenfuss AT. Characterization of the opossum immune genome provides insights into the evolution of the mammalian immune system. Genome Research. 17: 982-91. PMID 17495011 DOI: 10.1101/Gr.6121807 |
0.486 |
|
| 2007 |
Qin X, Ahn S, Speed TP, Rubin GM. Global analyses of mRNA translational control during early Drosophila embryogenesis. Genome Biology. 8: R63. PMID 17448252 DOI: 10.1186/gb-2007-8-4-r63 |
0.616 |
|
| 2007 |
Levy N, Zhao X, Tang H, Jaffe RB, Speed TP, Leitman DC. Multiple transcription factor elements collaborate with estrogen receptor α to activate an inducible estrogen response element in the NKG2E gene Endocrinology. 148: 3449-3450. PMID 17395694 DOI: 10.1210/en.2006-1632 |
0.472 |
|
| 2007 |
Rubio JP, Bahlo M, Stankovich J, Burfoot RK, Johnson LJ, Huxtable S, Butzkueven H, Lin L, Taylor BV, Speed TP, Kilpatrick TJ, Mignot E, Foote SJ. Analysis of extended HLA haplotypes in multiple sclerosis and narcolepsy families confirms a predisposing effect for the class I region in Tasmanian MS patients. Immunogenetics. 59: 177-86. PMID 17256150 DOI: 10.1007/S00251-006-0183-5 |
0.432 |
|
| 2007 |
Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. Biostatistics (Oxford, England). 8: 485-99. PMID 17189563 DOI: 10.1093/Biostatistics/Kxl042 |
0.5 |
|
| 2007 |
Sliwerska E, Meng F, Speed TP, Jones EG, Bunney WE, Akil H, Watson SJ, Burmeister M. SNPs on chips: the hidden genetic code in expression arrays. Biological Psychiatry. 61: 13-6. PMID 16690034 DOI: 10.1016/J.Biopsych.2006.01.023 |
0.498 |
|
| 2007 |
Loi S, Sotiriou C, Haibe-Kains B, Lallemand F, Conus N, Piccart MJ, Speed T, McArthur GA. Investigating tamoxifen resistance in the luminal B estrogen receptor positive breast cancer subtype: Tailoring treatment in hormone responsive breast cancer Journal of Clinical Oncology. 25: 10603-10603. DOI: 10.1200/Jco.2007.25.18_Suppl.10603 |
0.503 |
|
| 2007 |
Ge Y, Sealfon SC, Tseng CH, Speed TP. A Holm-type procedure controlling the false discovery rate Statistics and Probability Letters. 77: 1756-1762. DOI: 10.1016/J.Spl.2007.04.019 |
0.415 |
|
| 2006 |
Deakin JE, Papenfuss AT, Belov K, Cross JG, Coggill P, Palmer S, Sims S, Speed TP, Beck S, Graves JA. Evolution and comparative analysis of the MHC Class III inflammatory region. Bmc Genomics. 7: 281. PMID 17081307 DOI: 10.1186/1471-2164-7-281 |
0.447 |
|
| 2006 |
Dugas JC, Tai YC, Speed TP, Ngai J, Barres BA. Functional genomic analysis of oligodendrocyte differentiation. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 10967-83. PMID 17065439 DOI: 10.1523/JNEUROSCI.2572-06.2006 |
0.509 |
|
| 2006 |
Wormald S, Hilton DJ, Smyth GK, Speed TP. Proximal genomic localization of STAT1 binding and regulated transcriptional activity. Bmc Genomics. 7: 254. PMID 17032459 DOI: 10.1186/1471-2164-7-254 |
0.442 |
|
| 2006 |
Lin E, Pappenfuss T, Tan RB, Senyschyn D, Bahlo M, Speed TP, Foote SJ. Mapping of the Plasmodium chabaudi resistance locus char2. Infection and Immunity. 74: 5814-9. PMID 16988259 DOI: 10.1128/Iai.01690-05 |
0.405 |
|
| 2006 |
Baum J, Papenfuss AT, Baum B, Speed TP, Cowman AF. Regulation of apicomplexan actin-based motility Nature Reviews Microbiology. 4: 621-628. PMID 16845432 DOI: 10.1038/nrmicro1465 |
0.433 |
|
| 2006 |
Gilson PR, Nebl T, Vukcevic D, Moritz RL, Sargeant T, Speed TP, Schofield L, Crabb BS. Identification and stoichiometry of glycosylphosphatidylinositol-anchored membrane proteins of the human malaria parasite Plasmodium falciparum Molecular and Cellular Proteomics. 5: 1286-1299. PMID 16603573 DOI: 10.1074/mcp.M600035-MCP200 |
0.433 |
|
| 2006 |
Armstrong NJ, Brodnicki TC, Speed TP. Mind the gap: Analysis of marker-assisted breeding strategies for inbred mouse strains Mammalian Genome. 17: 273-287. PMID 16596449 DOI: 10.1007/s00335-005-0123-y |
0.405 |
|
| 2006 |
Gilad Y, Oshlack A, Smyth GK, Speed TP, White KP. Expression profiling in primates reveals a rapid evolution of human transcription factors. Nature. 440: 242-5. PMID 16525476 DOI: 10.1038/nature04559 |
0.501 |
|
| 2006 |
Sargeant TJ, Marti M, Caler E, Carlton JM, Simpson K, Speed TP, Cowman AF. Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites Genome Biology. 7. PMID 16507167 DOI: 10.1186/gb-2006-7-2-r12 |
0.445 |
|
| 2006 |
Wormald S, Zhang JG, Krebs DL, Mielke LA, Silver J, Alexander WS, Speed TP, Nicola NA, Hilton DJ. The comparative roles of suppressor of cytokine signaling-1 and -3 in the inhibition and desensitization of cytokine signaling. The Journal of Biological Chemistry. 281: 11135-43. PMID 16473883 DOI: 10.1074/jbc.M509595200 |
0.402 |
|
| 2006 |
Speca DJ, Rabbee N, Chihara D, Speed TP, Peterson AS. A genetic screen for behavioral mutations that perturb dopaminergic homeostasis in mice Genes, Brain and Behavior. 5: 19-28. PMID 16436185 DOI: 10.1111/J.1601-183X.2005.00127.X |
0.425 |
|
| 2006 |
Belov K, Deakin JE, Papenfuss AT, Baker ML, Melman SD, Siddle HV, Gouin N, Goode DL, Sargeant TJ, Robinson MD, Wakefield MJ, Mahony S, Cross JG, Benos PV, Samollow PB, Speed TP, et al. Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex. Plos Biology. 4: e46. PMID 16435885 DOI: 10.1371/Journal.Pbio.0040046 |
0.489 |
|
| 2006 |
Stankovich J, Cox CJ, Tan RB, Montgomery DS, Huxtable SJ, Rubio JP, Ehm MG, Johnson L, Butzkueven H, Kilpatrick TJ, Speed TP, Roses AD, Bahlo M, Foote SJ. On the utility of data from the International HapMap Project for Australian association studies. Human Genetics. 119: 220-2. PMID 16404587 DOI: 10.1007/S00439-005-0120-Y |
0.424 |
|
| 2006 |
Bahlo M, Stankovich J, Speed TP, Rubio JP, Burfoot RK, Foote SJ. Detecting genome wide haplotype sharing using SNP or microsatellite haplotype data. Human Genetics. 119: 38-50. PMID 16362347 DOI: 10.1007/S00439-005-0114-9 |
0.474 |
|
| 2006 |
Binz N, Graham CE, Simpson K, Lai YKY, Shen WY, Lai CM, Speed TP, Rakoczy PE. Long-term effect of therapeutic laser photocoagulation on gene expression in the eye Faseb Journal. 20: 383-385. PMID 16354724 DOI: 10.1096/fj.05-3890fje |
0.431 |
|
| 2006 |
Armstrong NJ, McPeek MS, Speed TP. Incorporating interference into linkage analysis for experimental crosses. Biostatistics (Oxford, England). 7: 374-86. PMID 16354713 DOI: 10.1093/Biostatistics/Kxj012 |
0.443 |
|
| 2006 |
Rabbee N, Speed TP. A genotype calling algorithm for affymetrix SNP arrays. Bioinformatics (Oxford, England). 22: 7-12. PMID 16267090 DOI: 10.1093/Bioinformatics/Bti741 |
0.438 |
|
| 2006 |
Tai YC, Speed TP. A multivariate empirical Bayes statistic for replicated microarray time course data Annals of Statistics. 34: 2387-2412. DOI: 10.1214/009053606000000759 |
0.458 |
|
| 2005 |
Likić VA, Gooley PR, Speed TP, Strehler EE. A statistical approach to the interpretation of molecular dynamics simulations of calmodulin equilibrium dynamics Protein Science. 14: 2955-2963. PMID 16322577 DOI: 10.1110/ps.051681605 |
0.426 |
|
| 2005 |
Sakthianandeswaren A, Elso CM, Simpson K, Curtis JM, Kumar B, Speed TP, Handman E, Foote SJ. The wound repair response controls outcome to cutaneous leishmaniasis. Proceedings of the National Academy of Sciences of the United States of America. 102: 15551-6. PMID 16223880 DOI: 10.1073/Pnas.0505630102 |
0.427 |
|
| 2005 |
Zhao X, Huang H, Speed TP. Finding short DNA motifs using permuted Markov models Journal of Computational Biology. 12: 894-906. PMID 16108724 DOI: 10.1089/Cmb.2005.12.894 |
0.442 |
|
| 2005 |
Barrier A, Lemoine A, Boelle PY, Tse C, Brault D, Chiappini F, Breittschneider J, Lacaine F, Houry S, Huguier M, Van der Laan MJ, Speed T, Debuire B, Flahault A, Dudoit S. Colon cancer prognosis prediction by gene expression profiling. Oncogene. 24: 6155-64. PMID 16091735 DOI: 10.1038/Sj.Onc.1208984 |
0.317 |
|
| 2005 |
Foote SJ, Rubio JP, Bahlo M, Kilpatrick TJ, Speed TP, Stankovich J, Burfoot R, Butzkueven H, Johnson L, Wilkinson C, Taylor B, Sale M, van der Mei IA, Dickinson JL, Groom P. Multiple sclerosis: a haplotype association study. Novartis Foundation Symposium. 267: 31-9; discussion 39-. PMID 15999799 DOI: 10.1002/047002139X.Ch4 |
0.433 |
|
| 2005 |
Beissbarth T, Tye-Din JA, Smyth GK, Speed TP, Anderson RP. A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. Bioinformatics (Oxford, England). 21: i29-37. PMID 15961469 DOI: 10.1093/bioinformatics/bti1013 |
0.416 |
|
| 2005 |
Wilkinson TN, Speed TP, Tregear GW, Bathgate RAD. Coevolution of the relaxin-like peptides and their receptors Annals of the New York Academy of Sciences. 1041: 534-539. PMID 15956757 DOI: 10.1196/annals.1282.080 |
0.414 |
|
| 2005 |
Wilkinson TN, Speed TP, Tregear GW, Bathgate RA. Evolution of the relaxin-like peptide family: from neuropeptide to reproduction. Annals of the New York Academy of Sciences. 1041: 530-3. PMID 15956756 DOI: 10.1196/annals.1282.079 |
0.399 |
|
| 2005 |
Baird PN, Foote SJ, Mackey DA, Craig J, Speed TP, Bureau A. Evidence for a novel glaucoma locus at chromosome 3p21-22. Human Genetics. 117: 249-57. PMID 15906098 DOI: 10.1007/S00439-005-1296-X |
0.443 |
|
| 2005 |
Stankovich J, Bahlo M, Rubio JP, Wilkinson CR, Thomson R, Banks A, Ring M, Foote SJ, Speed TP. Identifying nineteenth century genealogical links from genotypes. Human Genetics. 117: 188-99. PMID 15883841 DOI: 10.1007/S00439-005-1279-Y |
0.456 |
|
| 2005 |
Simpson KM, Baum J, Good RT, Winzeler EA, Cowman AF, Speed TP. A comparison of match-only algorithms for the analysis of Plasmodium falciparum oligonucleotide arrays International Journal For Parasitology. 35: 523-531. PMID 15826644 DOI: 10.1016/J.Ijpara.2005.02.010 |
0.471 |
|
| 2004 |
Rabbee N, Speca D, Armstrong NJ, Speed TP. Power calculations for selective genotyping in QTL mapping in backcross mice. Genetical Research. 84: 103-8. PMID 15678748 DOI: 10.1017/S0016672304007086 |
0.446 |
|
| 2004 |
Bolstad BM, Collin F, Simpson KM, Irizarry RA, Speed TP. Experimental Design and Low-Level Analysis of Microarray Data International Review of Neurobiology. 60: 25-58. PMID 15474586 DOI: 10.1016/S0074-7742(04)60002-X |
0.506 |
|
| 2004 |
Moritz RL, Ji H, Schütz F, Connolly LM, Kapp EA, Speed TP, Simpson RJ. A proteome strategy for fractionating proteins and peptides using continuous free-flow electrophoresis coupled off-line to reversed-phase high-performance liquid chromatography Analytical Chemistry. 76: 4811-4824. PMID 15307793 DOI: 10.1021/Ac049717L |
0.428 |
|
| 2004 |
Bourgon R, Delorenzi M, Sargeant T, Hodder AN, Crabb BS, Speed TP. The serine repeat antigen (SERA) gene family phylogeny in plasmodium: The impact of GC content and reconciliation of gene and species trees Molecular Biology and Evolution. 21: 2161-2171. PMID 15306658 DOI: 10.1093/molbev/msh228 |
0.466 |
|
| 2004 |
Lin DM, Yang YH, Scolnick JA, Brunet LJ, Marsh H, Peng V, Okazaki Y, Hayashizaki Y, Speed TP, Ngai J. Spatial patterns of gene expression in the olfactory bulb. Proceedings of the National Academy of Sciences of the United States of America. 101: 12718-23. PMID 15304640 DOI: 10.1073/pnas.0404872101 |
0.453 |
|
| 2004 |
Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP. Statistical modeling of sequencing errors in SAGE libraries. Bioinformatics (Oxford, England). 20: i31-9. PMID 15262778 DOI: 10.1093/bioinformatics/bth924 |
0.455 |
|
| 2004 |
Marciano PG, Brettschneider J, Manduchi E, Davis JE, Eastman S, Raghupathi R, Saatman KE, Speed TP, Stoeckert CJ, Eberwine JH, McIntosh TK. Neuron-specific mRNA complexity responses during hippocampal apoptosis after traumatic brain injury. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 2866-76. PMID 15044525 DOI: 10.1523/Jneurosci.5051-03.2004 |
0.446 |
|
| 2004 |
Rubio JP, Bahlo M, Tubridy N, Stankovich J, Burfoot R, Butzkueven H, Chapman C, Johnson L, Marriott M, Mraz G, Tait B, Wilkinson C, Taylor B, Speed TP, Foote SJ, et al. Extended haplotype analysis in the HLA complex reveals an increased frequency of the HFE-C282Y mutation in individuals with multiple sclerosis. Human Genetics. 114: 573-80. PMID 15014978 DOI: 10.1007/S00439-004-1095-9 |
0.426 |
|
| 2004 |
Beißbarth T, Speed TP. GOstat: Find statistically overrepresented Gene Ontologies with a group of genes Bioinformatics. 20: 1464-1465. PMID 14962934 DOI: 10.1093/bioinformatics/bth088 |
0.504 |
|
| 2004 |
Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP. A benchmark for Affymetrix GeneChip expression measures. Bioinformatics (Oxford, England). 20: 323-31. PMID 14960458 DOI: 10.1093/Bioinformatics/Btg410 |
0.479 |
|
| 2004 |
Yap VB, Speed TP. Modeling DNA Base Substitution in Large Genomic Regions from Two Organisms Journal of Molecular Evolution. 58: 12-18. PMID 14743311 DOI: 10.1007/s00239-003-2520-8 |
0.456 |
|
| 2004 |
Li LM, Speed TP. Deconvolution of sparse positive spikes Journal of Computational and Graphical Statistics. 13: 853-870. DOI: 10.1198/106186004X13118 |
0.434 |
|
| 2003 |
Schütz F, Kapp EA, Simpson RJ, Speed TP. Deriving statistical models for predicting peptide tandem MS product ion intensities Biochemical Society Transactions. 31: 1479-1483. PMID 14641094 DOI: 10.1042/Bst0311479 |
0.414 |
|
| 2003 |
Kapp EA, Schütz F, Reid GE, Eddes JS, Moritz RL, O'Hair RA, Speed TP, Simpson RJ. Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation. Analytical Chemistry. 75: 6251-64. PMID 14616009 DOI: 10.1021/Ac034616T |
0.413 |
|
| 2003 |
Hodder AN, Drew DR, Epa VC, Delorenzi M, Bourgon R, Miller SK, Moritz RL, Frecklington DF, Simpson RJ, Speed TP, Pike RN, Crabb BS. Enzymic, phylogenetic, and structural characterization of the unusual papain-like protease domain of Plasmodium falciparum SERA5. The Journal of Biological Chemistry. 278: 48169-77. PMID 13679369 DOI: 10.1074/Jbc.M306755200 |
0.434 |
|
| 2003 |
de Koning-Ward TF, O'Donnell RA, Drew DR, Thomson R, Speed TP, Crabb BS. A new rodent model to assess blood stage immunity to the Plasmodium falciparum antigen merozoite surface protein 119 reveals a protective role for invasion inhibitory antibodies. The Journal of Experimental Medicine. 198: 869-75. PMID 12963693 DOI: 10.1084/jem.20030085 |
0.41 |
|
| 2003 |
Smyth GK, Yang YH, Speed T. Statistical issues in cDNA microarray data analysis. Methods in Molecular Biology (Clifton, N.J.). 224: 111-36. PMID 12710670 DOI: 10.1385/1-59259-364-X:111 |
0.337 |
|
| 2002 |
Yang YH, Speed T. Design issues for cDNA microarray experiments. Nature Reviews. Genetics. 3: 579-88. PMID 12154381 DOI: 10.1038/Nrg863 |
0.496 |
|
| 2001 |
Triglia T, Thompson J, Caruana SR, Delorenzi M, Speed T, Cowman AF. Identification of proteins from Plasmodium falciparum that are homologous to reticulocyte binding proteins in Plasmodium vivax. Infection and Immunity. 69: 1084-1092. PMID 11160005 DOI: 10.1128/Iai.69.2.1084-1092.2001 |
0.517 |
|
| 1982 |
Hart RP, Iveson JB, Bradshaw SD, Speed TP. A study of isolation procedures for multiple infections of Salmonella and Arizona in a wild marsupial, the quokka (Setonix brachyurus) Journal of Applied Bacteriology. 53: 395-406. PMID 6763026 DOI: 10.1111/j.1365-2672.1982.tb01288.x |
0.4 |
|
| 1978 |
Burke V, Malajczuk A, Gracey M, Speed T, Thornett M. Intestinal transport of monosaccharide after biliary diversion in the rat. Immunology and Cell Biology. 56: 253-263. PMID 708318 DOI: 10.1038/Icb.1978.27 |
0.454 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2002 |
Delorenzi M, Sexton A, Shams-Eldin H, Schwarz RT, Speed T, Schofield L. Genes for glycosylphosphatidylinositol toxin biosynthesis in Plasmodium falciparum. Infection and Immunity. 70: 4510-22. PMID 12117963 DOI: 10.1128/Iai.70.8.4510-4522.2002 |
0.29 |
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| 2006 |
Vawter MP, Tomita H, Meng F, Bolstad B, Li J, Evans S, Choudary P, Atz M, Shao L, Neal C, Walsh DM, Burmeister M, Speed T, Myers R, Jones EG, et al. Mitochondrial-related gene expression changes are sensitive to agonal-pH state: implications for brain disorders. Molecular Psychiatry. 11: 615, 663-79. PMID 16636682 DOI: 10.1038/Sj.Mp.4001830 |
0.285 |
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| 2006 |
Neve RM, Chin K, Fridlyand J, Yeh J, Baehner FL, Fevr T, Clark L, Bayani N, Coppe JP, Tong F, Speed T, Spellman PT, DeVries S, Lapuk A, Wang NJ, et al. A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Cancer Cell. 10: 515-27. PMID 17157791 DOI: 10.1016/J.Ccr.2006.10.008 |
0.283 |
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| 2010 |
Atkinson EJ, McDonnell SK, Witte JS, Crawford DC, Fan Y, Fridley B, Li D, Li L, Rodin A, Sadee W, Speed T, Weiss ST, Yang J, Yerges L, Schaid DJ. Conference Scene: Lessons learned from the 5th Statistical Analysis Workshop of the Pharmacogenetics Research Network. Pharmacogenomics. 11: 297-303. PMID 20235785 DOI: 10.2217/Pgs.10.5 |
0.282 |
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| 2003 |
Smyth GK, Speed T. Normalization of cDNA microarray data. Methods (San Diego, Calif.). 31: 265-73. PMID 14597310 DOI: 10.1016/S1046-2023(03)00155-5 |
0.28 |
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| 2003 |
Speed T. Microarray data analysis for beginners Nature Cell Biology. 5: 1039-1039. DOI: 10.1038/Ncb1203-1039 |
0.277 |
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| 2010 |
Speed T. The unreasonable effectiveness of statistics in genome science Significance. 7: 133-133. DOI: 10.1111/J.1740-9713.2010.00441.X |
0.259 |
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| 2006 |
Vawter MP, Tomita H, Meng F, Bolstad B, Li J, Evans S, Choudary P, Atz M, Shao L, Neal C, Walsh DM, Burmeister M, Speed T, Myers R, Jones EG, et al. Mitochondrial related gene expression changes are sensitive to agonal-pH state Molecular Psychiatry. 11: 615-615. DOI: 10.1038/Sj.Mp.4001850 |
0.254 |
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| 1996 |
Broman K, Speed T, Tigges M. Estimation of antigen-responsive T cell frequencies in PBMC from human subjects Journal of Immunological Methods. 198: 119-132. PMID 8946008 DOI: 10.1016/S0022-1759(96)00136-6 |
0.25 |
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| 2005 |
Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ, Meng F. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Research. 33: e175. PMID 16284200 DOI: 10.1093/Nar/Gni179 |
0.243 |
|
| 2004 |
Speed T. Discussions on “A Bayesian Approach to DNA Sequence Segmentation” Biometrics. 60: 583-584. DOI: 10.1111/J.0006-341X.2004.206_4.X |
0.237 |
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| 2009 |
Krane DE, Bahn V, Balding D, Barlow B, Cash H, Desportes BL, D'Eustachio P, Devlin K, Doom TE, Dror I, Ford S, Funk C, Gilder J, Hampikian G, Inman K, ... ... Speed T, et al. Time for DNA disclosure. Science (New York, N.Y.). 326: 1631-2. PMID 20019271 DOI: 10.1126/Science.326.5960.1631 |
0.223 |
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| 2008 |
Zhang NR, Wildermuth MC, Speed TP. Transcription factor binding site prediction with multivariate gene expression data Annals of Applied Statistics. 2: 332-365. DOI: 10.1214/07-AOAS142 |
0.221 |
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| 2005 |
Yap VB, Speed T. Rooting a phylogenetic tree with nonreversible substitution models. Bmc Evolutionary Biology. 5: 2. PMID 15629063 DOI: 10.1186/1471-2148-5-2 |
0.218 |
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| 2011 |
Speed T. Mathematics. A correlation for the 21st century. Science (New York, N.Y.). 334: 1502-3. PMID 22174235 DOI: 10.1126/Science.1215894 |
0.215 |
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| 2006 |
Speed T. Statistics for Experimenters: Design, Innovation, and Discovery Journal of the American Statistical Association. 101: 1720-1721. DOI: 10.1198/Jasa.2006.S139 |
0.212 |
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| 2011 |
Speed T. Large‐Scale Inference: Empirical Bayes Methods for Estimation, Testing, and Prediction by Bradley Efron International Statistical Review. 79: 126-127. DOI: 10.1111/J.1751-5823.2011.00134_13.X |
0.209 |
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| 1993 |
Yu B, Speed T. A rate of convergence result for a universal D-semifaithful code Ieee Transactions On Information Theory. 39: 813-820. DOI: 10.1109/18.256490 |
0.204 |
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| 1991 |
Speed T. [That BLUP is a Good Thing: The Estimation of Random Effects]: Comment Statistical Science. 6: 42-44. DOI: 10.1214/Ss/1177011930 |
0.202 |
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| 2011 |
Speed T. Too much or too little scepticism? Significance. 8: 35-35. DOI: 10.1111/J.1740-9713.2011.00477.X |
0.202 |
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| 2008 |
Speed T. Fifty Years of Human Genetics: A Festschrift and Liber Amicorum to Celebrate the Life and Work of George Robert Fraser edited by Oliver Mayo and Carolyn Leach International Statistical Review. 76: 155-156. DOI: 10.1111/J.1751-5823.2007.00039_17.X |
0.2 |
|
| 2010 |
Speed T. Statistical Models and Causal Inference: A Dialogue with the Social Sciences by David A. Freedman International Statistical Review. 78: 456-457. DOI: 10.1111/J.1751-5823.2010.00122_10.X |
0.198 |
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| 2010 |
Speed T. Statistical Models: Theory and Practice, Revised Edition by David A. Freedman International Statistical Review. 78: 457-458. DOI: 10.1111/J.1751-5823.2010.00122_11.X |
0.196 |
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| 2010 |
Speed T. The Science of Bradley Efron: Selected Papers edited by Carl N. Morris, Robert Tibshirani International Statistical Review. 78: 471-472. DOI: 10.1111/J.1751-5823.2010.00122_25.X |
0.194 |
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| 2004 |
Masayesva BG, Ha P, Garrett-Mayer E, Pilkington T, Mao R, Pevsner J, Speed T, Benoit N, Moon CS, Sidransky D, Westra WH, Califano J. Gene expression alterations over large chromosomal regions in cancers include multiple genes unrelated to malignant progression. Proceedings of the National Academy of Sciences of the United States of America. 101: 8715-20. PMID 15155901 DOI: 10.1073/Pnas.0400027101 |
0.192 |
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| 2011 |
Speed T. The Pleasures of Statistics: The Autobiography of Frederick Mosteller by Frederick Mosteller, edited by Stephen E. Fienberg David C. Hoaglin, Judith M. Tanur International Statistical Review. 79: 125-126. DOI: 10.1111/J.1751-5823.2011.00134_12.X |
0.191 |
|
| 1988 |
Selkirk KE, Rade L, Speed T. Teaching of Statistics in the Computer Age The Mathematical Gazette. 72: 241. DOI: 10.2307/3618274 |
0.188 |
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| 1987 |
Cobb G, Rade L, Speed T. Teaching of Statistics in the Computer Age. Journal of the American Statistical Association. 82: 954. DOI: 10.2307/2288826 |
0.188 |
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| 2013 |
Purdom E, Restall C, Busuttil RA, Schluter H, Boussioutas A, Thompson EW, Anderson RL, Speed TP, Haviv I. Determining epithelial contribution to in vivo mesenchymal tumour expression signature using species-specific microarray profiling analysis of xenografts. Genetics Research. 95: 14-29. PMID 23497823 DOI: 10.1017/S0016672313000013 |
0.182 |
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| 2013 |
Foote SJ, Speed T, Handman E. What can bioinformatics do for parasitology research? Parasitology Today (Personal Ed.). 14: 346-7. PMID 17040813 DOI: 10.1016/S0169-4758(98)01299-X |
0.181 |
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| 1996 |
Castleberry D, Cech J, Erman D, Hankin D, Healey M, Kondolf M, Mengel M, Mohr M, Moyle P, Nielsen JL, Speed T, Williams J. Uncertainty and instream flow standards Fisheries. 21: 20-21. DOI: 10.1577/1548-8446-21-8 |
0.181 |
|
| 2010 |
Speed T. The United States of Mathematics Presidential Debate by Colin Adams, Thomas Garrity, moderated by Edward Burger International Statistical Review. 78: 147-147. DOI: 10.1111/J.1751-5823.2010.00109_14.X |
0.181 |
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| 2007 |
Speed T. Mathematics at Berkeley: A History by Calvin C. Moore International Statistical Review. 75: 277-277. DOI: 10.1111/J.1751-5823.2007.00015_29.X |
0.177 |
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| 2017 |
Gigante S, Woodruff C, Lucattini A, Ritchie M, Speed T. In-house training of the nanonet local basecaller: opportunities and challenges F1000research. 6. DOI: 10.7490/F1000Research.1114122.1 |
0.176 |
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| 2010 |
Speed T. I Want to Be a Mathematician: A Conversation with Paul Halmos by George Csicsery (Director) International Statistical Review. 78: 147-148. DOI: 10.1111/J.1751-5823.2010.00109_15.X |
0.175 |
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| 2008 |
Speed T. Reminiscences of a Statistician: The Company I Kept by Erich L. Lehmann International Statistical Review. 76: 153-153. DOI: 10.1111/J.1751-5823.2007.00039_15.X |
0.17 |
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| 2018 |
Speed T. Peter Gavin Hall Statistica Sinica. DOI: 10.5705/Ss.202018.0028 |
0.17 |
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| 2009 |
Speed T, Zhao H. Microarrays. Statistical Methods in Medical Research. 18: 531-2. PMID 20048382 DOI: 10.1177/0962280209352042 |
0.155 |
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| 2013 |
Tomita H, Ziegler ME, Kim HB, Evans SJ, Choudary PV, Li JZ, Meng F, Dai M, Myers RM, Neal CR, Speed TP, Barchas JD, Schatzberg AF, Watson SJ, Akil H, et al. G protein-linked signaling pathways in bipolar and major depressive disorders. Frontiers in Genetics. 4: 297. PMID 24391664 DOI: 10.3389/Fgene.2013.00297 |
0.138 |
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| 2011 |
Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ. Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation (Genome Research (2010), 20 (1719-1729)) Genome Research. 21: 146. |
0.129 |
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| 2005 |
Beißbarth T, Tye-Din JA, Smyth GK, Speed TP, Anderson RP. A systematic approach for comprehensive T-cell epitope discovery using peptide libraries Ismb 2005 Proceedings - 13th International Conference On Intelligent Systems For Molecular Biology. i29-i37. |
0.127 |
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| 2009 |
Speed T. Foreword Batch Effects and Noise in Microarray Experiments: Sources and Solutions. xvii. DOI: 10.1002/9780470685983 |
0.12 |
|
| 2008 |
Ge Y, Sealfon SC, Speed TP. Some step-down procedures controlling the false discovery rate under dependence Statistica Sinica. 18: 881-904. |
0.093 |
|
| 2004 |
Lawrence C, Auger I, Gupta M, Liu JS, Speed T, Thorne JL. Discussions on "A Bayesian approach to DNA sequence segmentation" Biometrics. 60: 581-588. DOI: 10.1111/j.0006-341X.2004.206_2.x |
0.081 |
|
| 2008 |
Speed TP, Zhao H. Chromosome Maps Handbook of Statistical Genetics: Third Edition. 1: 1-39. DOI: 10.1002/9780470061619.ch1 |
0.079 |
|
| 2011 |
Vaughn MP, Shinohara DB, Castagna N, Hicks JL, Netto G, de Marzo AM, Speed TJ, Reichert ZR, Kwabi-Addo B, Henderson CJ, Wolf CR, Yegnasubramanian S, Nelson WG. Humanizing π-class glutathione s-transferase regulation in a mouse model alters liver toxicity in response to acetaminophen overdose Plos One. 6. PMID 22022436 DOI: 10.1371/Journal.Pone.0025707 |
0.072 |
|
| 1982 |
Papandreou N, Speed TP, McDonald SE, Skates S, Landauer AA. Factors influencing the pre-senternce report: An analysis of hypothetical Australian & New Zealand Journal of Criminology. 15: 207-218. DOI: 10.1177/000486588201500403 |
0.068 |
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| 2010 |
Werner JK, Speed T, Bhandari R. Protein pyrophosphorylation by diphosphoinositol pentakisphosphate (InsP7). Methods in Molecular Biology (Clifton, N.J.). 645: 87-102. PMID 20645183 DOI: 10.1007/978-1-60327-175-2_6 |
0.063 |
|
| 2008 |
Chapman KD, Neogi PB, Hake KD, Stawska AA, Speed TR, Cotter MQ, Garrett DC, Kerby T, Richardson CD, Ayre BG, Ghosh S, Kinney AJ. Reduced oil accumulation in cottonseeds transformed with a Brassica nonfunctional allele of a delta-12 fatty acid desaturase (FAD2) Crop Science. 48: 1470-1481. DOI: 10.2135/Cropsci2007.11.0618 |
0.063 |
|
| 2004 |
Millard JT, Katz JL, Goda J, Frederick ED, Pierce SE, Speed TJ, Thamattoor DM. DNA interstrand cross-linking by a mycotoxic diepoxide. Biochimie. 86: 419-23. PMID 15358058 DOI: 10.1016/j.biochi.2004.03.010 |
0.052 |
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| 2013 |
Speed T, Pitman J, Rice J. A brief history of the statistics department of the University of California at Berkeley Strength in Numbers: the Rising of Academic Statistics Departments in the U. S.. 317-338. DOI: 10.1007/978-1-4614-3649-2_23 |
0.046 |
|
| 2014 |
Okada N, Lin CP, Ribeiro MC, Biton A, Lai G, He X, Bu P, Vogel H, Jablons DM, Keller AC, Wilkinson JE, He B, Speed TP, He L. A positive feedback between p53 and miR-34 miRNAs mediates tumor suppression. Genes & Development. 28: 438-50. PMID 24532687 DOI: 10.1101/Gad.233585.113 |
0.044 |
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| 2007 |
Speed T. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: v-vi. |
0.04 |
|
| 2011 |
Speed TC, Kashani A. Desensitization of energetic and hazardous chemical materials Aiche Annual Meeting, Conference Proceedings. |
0.037 |
|
| 1993 |
Hengartner N, Speed TP. Assessing between-block heterogeneity within the post-strata of the 1990 Post-Enumeration Survey Journal of the American Statistical Association. 88. PMID 12155417 DOI: 10.1080/01621459.1993.10476382 |
0.036 |
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| 2004 |
Speed TJ, McIntyre JP, Thamattoor DM. Wittig reaction using a stabilized phosphorus ylid: An efficient and stereoselective synthesis of ethyl trans-cinnamate Journal of Chemical Education. 81: 1355-1356. |
0.033 |
|
| 2002 |
Delorenzi M, Speed T. An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. Bioinformatics (Oxford, England). 18: 617-25. PMID 12016059 |
0.032 |
|
| 1984 |
Speed TP. Discussion of Paper by T. Tjur International Statistical Review / Revue Internationale De Statistique. 52: 77. DOI: 10.2307/1403244 |
0.03 |
|
| 2012 |
Speed T. A correlation for the 21st century (Science (2011) (1502)) Science. 335: 167. DOI: 10.1126/Science.335.6065.167-A |
0.029 |
|
| 2008 |
Speed T. Journal of Computational Biology: Preface Journal of Computational Biology. 15: 653. DOI: 10.1089/cmb.2008.P001 |
0.024 |
|
| 1989 |
Speed TP. Contribution to Discussion of “Eelworms, Bullet Holes, and Geraldine Ferraro” Journal of Educational Statistics. 14: 179-181. DOI: 10.3102/10769986014002179 |
0.019 |
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| 2004 |
Hutchins SS, Papania MJ, Amler R, Maes EF, Grabowsky M, Bromberg K, Glasglow V, Speed T, Bellini WJ, Orenstein WA. Evaluation of the measles clinical case definition Journal of Infectious Diseases. 189: S153-S159. PMID 15106104 |
0.015 |
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| 1985 |
Speed TP. Discussion of Paper by G. Shafer International Statistical Review / Revue Internationale De Statistique. 53: 276. DOI: 10.2307/1402891 |
0.011 |
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| Hide low-probability matches. |