Year |
Citation |
Score |
2024 |
Parker E, Omah IF, Varilly P, Magee A, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Tomkins-Tinch CH, Otieno JR, Akanbi O, Egwuenu A, ... ... Suchard MA, et al. Genomic epidemiology uncovers the timing and origin of the emergence of mpox in humans. Medrxiv : the Preprint Server For Health Sciences. PMID 38947052 DOI: 10.1101/2024.06.18.24309104 |
0.717 |
|
2024 |
Djuicy DD, Omah IF, Parker E, Tomkins-Tinch CH, Otieno JR, Yifomnjou MHM, Essengue LLM, Ayinla AO, Sijuwola AE, Ahmed MI, Ope-Ewe OO, Ogunsanya OA, Olono A, Eromon P, Yonga MGW, ... ... Suchard MA, et al. Molecular epidemiology of recurrent zoonotic transmission of mpox virus in West Africa. Medrxiv : the Preprint Server For Health Sciences. PMID 38947021 DOI: 10.1101/2024.06.18.24309115 |
0.716 |
|
2024 |
Kang M, Wang LF, Sun BW, Wan WB, Ji X, Baele G, Bi YH, Suchard MA, Lai A, Zhang M, Wang L, Zhu YH, Ma L, Li HP, Haerheng A, et al. Zoonotic infections by avian influenza virus: changing global epidemiology, investigation, and control. The Lancet. Infectious Diseases. PMID 38878787 DOI: 10.1016/S1473-3099(24)00234-2 |
0.41 |
|
2024 |
Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Matsen Iv FA, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. Random-effects substitution models for phylogenetics via scalable gradient approximations. Systematic Biology. PMID 38712512 DOI: 10.1093/sysbio/syae019 |
0.783 |
|
2024 |
Shao Y, Magee AF, Vasylyeva TI, Suchard MA. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Plos Computational Biology. 20: e1011640. PMID 38551979 DOI: 10.1371/journal.pcbi.1011640 |
0.752 |
|
2024 |
Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Matsen FA, Suchard MA. Many-core algorithms for high-dimensional gradients on phylogenetic trees. Bioinformatics (Oxford, England). 40. PMID 38243701 DOI: 10.1093/bioinformatics/btae030 |
0.485 |
|
2024 |
Didier G, Glatt-Holtz NE, Holbrook AJ, Magee AF, Suchard MA. On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America. 121: e2318989121. PMID 38215186 DOI: 10.1073/pnas.2318989121 |
0.717 |
|
2023 |
Yang J, Schuemie MJ, Ji X, Suchard MA. Massive Parallelization of Massive Sample-size Survival Analysis. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 33: 289-302. PMID 38716090 DOI: 10.1080/10618600.2023.2213279 |
0.43 |
|
2023 |
Matteson NL, Hassler GW, Kurzban E, Schwab MA, Perkins SA, Gangavarapu K, Levy JI, Parker E, Pride D, Hakim A, De Hoff P, Cheung W, Castro-Martinez A, Rivera A, Veder A, ... ... Suchard MA, et al. Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics. Cell. PMID 38101407 DOI: 10.1016/j.cell.2023.11.024 |
0.424 |
|
2023 |
Shao Y, Magee AF, Vasylyeva TI, Suchard MA. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. Biorxiv : the Preprint Server For Biology. PMID 37961423 DOI: 10.1101/2023.10.31.564882 |
0.752 |
|
2023 |
Fisher AA, Ji X, Nishimura A, Baele G, Lemey P, Suchard MA. Shrinkage-based Random Local Clocks with Scalable Inference. Molecular Biology and Evolution. 40. PMID 37950885 DOI: 10.1093/molbev/msad242 |
0.477 |
|
2023 |
He WT, Li D, Baele G, Zhao J, Jiang Z, Ji X, Veit M, Suchard MA, Holmes EC, Lemey P, Boni MF, Su S. Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype. Virus Evolution. 9: vead051. PMID 37711483 DOI: 10.1093/ve/vead051 |
0.459 |
|
2023 |
McBride DS, Garushyants SK, Franks J, Magee AF, Overend SH, Huey D, Williams AM, Faith SA, Kandeil A, Trifkovic S, Miller L, Jeevan T, Patel A, Nolting JM, Tonkovich MJ, ... ... Suchard MA, et al. Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Nature Communications. 14: 5105. PMID 37640694 DOI: 10.1038/s41467-023-40706-y |
0.723 |
|
2023 |
Zhang Z, Nishimura A, Trovão NS, Cherry JL, Holbrook AJ, Ji X, Lemey P, Suchard MA. Accelerating Bayesian inference of dependency between mixed-type biological traits. Plos Computational Biology. 19: e1011419. PMID 37639445 DOI: 10.1371/journal.pcbi.1011419 |
0.516 |
|
2023 |
Zhao J, Kang M, Wu H, Sun B, Baele G, He WT, Lu M, Suchard MA, Ji X, He N, Su S, Veit M. Risk assessment of SARS-CoV-2 replicating and evolving in animals. Trends in Microbiology. PMID 37541811 DOI: 10.1016/j.tim.2023.07.002 |
0.393 |
|
2023 |
Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Robertson DL, Dellicour S, Worobey M, Wertheim JO, et al. The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. Biorxiv : the Preprint Server For Biology. PMID 37502985 DOI: 10.1101/2023.07.12.548617 |
0.732 |
|
2023 |
Tsui JL, McCrone JT, Lambert B, Bajaj S, Inward RPD, Bosetti P, Pena RE, Tegally H, Hill V, Zarebski AE, Peacock TP, Liu L, Wu N, Davis M, Bogoch II, ... ... Suchard MA, et al. Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. Science (New York, N.Y.). 381: 336-343. PMID 37471538 DOI: 10.1126/science.adg6605 |
0.45 |
|
2023 |
Ji X, Fisher AA, Su S, Thorne JL, Potter B, Lemey P, Baele G, Suchard MA. Scalable Bayesian divergence time estimation with ratio transformations. Systematic Biology. PMID 37458991 DOI: 10.1093/sysbio/syad039 |
0.706 |
|
2023 |
Fourment M, Swanepoel CJ, Galloway JG, Ji X, Gangavarapu K, Suchard MA, Matsen FA. Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation. Genome Biology and Evolution. PMID 37265233 DOI: 10.1093/gbe/evad099 |
0.423 |
|
2023 |
Magee AF, Holbrook AJ, Pekar JE, Caviedes-Solis IW, Iv FAM, Baele G, Wertheim JO, Ji X, Lemey P, Suchard MA. Random-effects substitution models for phylogenetics via scalable gradient approximations. Arxiv. PMID 36994154 |
0.785 |
|
2023 |
Gangavarapu K, Ji X, Baele G, Fourment M, Lemey P, Iv FAM, Suchard MA. Many-core algorithms for high-dimensional gradients on phylogenetic trees. Arxiv. PMID 36945693 |
0.493 |
|
2023 |
McBride D, Garushyants S, Franks J, Magee A, Overend S, Huey D, Williams A, Faith S, Kandeil A, Trifkovic S, Miller L, Jeevan T, Patel A, Nolting J, Tonkovich M, ... ... Suchard M, et al. Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer. Research Square. PMID 36824718 DOI: 10.21203/rs.3.rs-2574993/v1 |
0.719 |
|
2022 |
Hassler GW, Magee A, Zhang Z, Baele G, Lemey P, Ji X, Fourment M, Suchard MA. Data integration in Bayesian phylogenetics. Annual Review of Statistics and Its Application. 10: 353-377. PMID 38774036 DOI: 10.1146/annurev-statistics-033021-112532 |
0.779 |
|
2022 |
Zhao J, Dellicour S, Yan Z, Veit M, Gill MS, He WT, Zhai X, Ji X, Suchard MA, Lemey P, Su S. Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China. Journal of Virology. e0109122. PMID 36475767 DOI: 10.1128/jvi.01091-22 |
0.506 |
|
2022 |
Holbrook AJ, Ji X, Suchard MA. BAYESIAN MITIGATION OF SPATIAL COARSENING FOR A HAWKES MODEL APPLIED TO GUNFIRE, WILDFIRE AND VIRAL CONTAGION. The Annals of Applied Statistics. 16: 573-595. PMID 36211254 DOI: 10.1214/21-aoas1517 |
0.485 |
|
2022 |
Fisher AA, Hassler GW, Ji X, Baele G, Suchard MA, Lemey P. Scalable Bayesian phylogenetics. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20210242. PMID 35989603 DOI: 10.1098/rstb.2021.0242 |
0.479 |
|
2022 |
McCrone JT, Hill V, Bajaj S, Pena RE, Lambert BC, Inward R, Bhatt S, Volz E, Ruis C, Dellicour S, Baele G, Zarebski AE, Sadilek A, Wu N, Schneider A, ... ... Suchard MA, et al. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature. PMID 35952712 DOI: 10.1038/s41586-022-05200-3 |
0.441 |
|
2022 |
Pekar JE, Magee A, Parker E, Moshiri N, Izhikevich K, Havens JL, Gangavarapu K, Malpica Serrano LM, Crits-Christoph A, Matteson NL, Zeller M, Levy JI, Wang JC, Hughes S, Lee J, ... ... Suchard MA, et al. The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2. Science (New York, N.Y.). eabp8337. PMID 35881005 DOI: 10.1126/science.abp8337 |
0.718 |
|
2022 |
Tian J, Sun J, Li D, Wang N, Wang L, Zhang C, Meng X, Ji X, Suchard MA, Zhang X, Lai A, Su S, Veit M. Emerging viruses: Cross-species transmission of coronaviruses, filoviruses, henipaviruses, and rotaviruses from bats. Cell Reports. 39: 110969. PMID 35679864 DOI: 10.1016/j.celrep.2022.110969 |
0.432 |
|
2022 |
He WT, Hou X, Zhao J, Sun J, He H, Si W, Wang J, Jiang Z, Yan Z, Xing G, Lu M, Suchard MA, Ji X, Gong W, He B, et al. Virome characterization of game animals in China reveals a spectrum of emerging pathogens. Cell. PMID 35298912 DOI: 10.1016/j.cell.2022.02.014 |
0.419 |
|
2022 |
Holbrook AJ, Ji X, Suchard MA. From viral evolution to spatial contagion: a biologically modulated Hawkes model. Bioinformatics (Oxford, England). PMID 35040956 DOI: 10.1093/bioinformatics/btac027 |
0.543 |
|
2021 |
McCrone JT, Hill V, Bajaj S, Pena RE, Lambert BC, Inward R, Bhatt S, Volz E, Ruis C, Dellicour S, Baele G, Zarebski AE, Sadilek A, Wu N, Schneider A, ... ... Suchard MA, et al. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Medrxiv : the Preprint Server For Health Sciences. PMID 34981069 DOI: 10.1101/2021.12.14.21267606 |
0.444 |
|
2021 |
Kraemer M, McCrone J, Hill V, Bajaj S, Evans-Pena R, Lambert B, Inward R, Bhatt S, Volz E, Ruis C, Dellicour S, Baele G, Zarebski A, Sadilek A, Wu N, ... ... Suchard M, et al. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Research Square. PMID 34981043 DOI: 10.21203/rs.3.rs-1159614/v1 |
0.445 |
|
2021 |
He WT, Bollen N, Xu Y, Zhao J, Dellicour S, Yan Z, Gong W, Zhang C, Zhang L, Lu M, Lai A, Suchard MA, Ji X, Tu C, Lemey P, et al. Phylogeography reveals association between swine trade and the spread of porcine epidemic diarrhea virus in China and across the world. Molecular Biology and Evolution. PMID 34951645 DOI: 10.1093/molbev/msab364 |
0.467 |
|
2021 |
Lemey P, Ruktanonchai N, Hong SL, Colizza V, Poletto C, Van den Broeck F, Gill MS, Ji X, Levasseur A, Oude Munnink BB, Koopmans M, Sadilek A, Lai S, Tatem AJ, Baele G, ... Suchard MA, et al. Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature. PMID 34192736 DOI: 10.1038/s41586-021-03754-2 |
0.45 |
|
2021 |
Lemey P, Ruktanonchai N, Hong SL, Colizza V, Poletto C, Van den Broeck F, Gill MS, Ji X, Levasseur A, Oude Munnink BB, Koopmans M, Sadilek A, Lai S, Tatem AJ, Baele G, ... Suchard MA, et al. Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature. PMID 34192736 DOI: 10.1038/s41586-021-03754-2 |
0.45 |
|
2021 |
Holbrook AJ, Lemey P, Baele G, Dellicour S, Brockmann D, Rambaut A, Suchard MA. Massive parallelization boosts big Bayesian multidimensional scaling. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 30: 11-24. PMID 34168419 DOI: 10.1080/10618600.2020.1754226 |
0.318 |
|
2021 |
Lemey P, Ruktanonchai N, Hong S, Colizza V, Poletto C, den Broeck FV, Gill M, Ji X, Levasseur A, Sadilek A, Lai S, Tatem A, Baele G, Suchard M, Dellicour S. SARS-CoV-2 European resurgence foretold: interplay of introductions and persistence by leveraging genomic and mobility data. Research Square. PMID 33594355 DOI: 10.21203/rs.3.rs-208849/v1 |
0.452 |
|
2020 |
Hassler G, Tolkoff MR, Allen WL, Ho LST, Lemey P, Suchard MA. Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements. Journal of the American Statistical Association. 117: 678-692. PMID 36060555 DOI: 10.1080/01621459.2020.1799812 |
0.306 |
|
2020 |
Karcher MD, Carvalho LM, Suchard MA, Dudas G, Minin VN. Estimating effective population size changes from preferentially sampled genetic sequences. Plos Computational Biology. 16: e1007774. PMID 33044955 DOI: 10.1371/journal.pcbi.1007774 |
0.605 |
|
2020 |
Lemey P, Hong SL, Hill V, Baele G, Poletto C, Colizza V, O'Toole Á, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2. Nature Communications. 11: 5110. PMID 33037213 DOI: 10.1038/s41467-020-18877-9 |
0.305 |
|
2020 |
Baele G, Gill MS, Lemey P, Suchard MA. Hamiltonian Monte Carlo sampling to estimate past population dynamics using the skygrid coalescent model in a Bayesian phylogenetics framework. Wellcome Open Research. 5: 53. PMID 32923688 DOI: 10.12688/wellcomeopenres.15770.1 |
0.322 |
|
2020 |
Worobey M, Pekar J, Larsen BB, Nelson MI, Hill V, Joy JB, Rambaut A, Suchard MA, Wertheim JO, Lemey P. The emergence of SARS-CoV-2 in Europe and North America. Science (New York, N.Y.). PMID 32912998 DOI: 10.1126/Science.Abc8169 |
0.301 |
|
2020 |
Schuemie MJ, Ryan PB, Pratt N, Chen R, You SC, Krumholz HM, Madigan D, Hripcsak G, Suchard MA. Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND). Journal of the American Medical Informatics Association : Jamia. 27: 1331-1337. PMID 32909033 DOI: 10.1093/Jamia/Ocaa103 |
0.31 |
|
2020 |
Fisher AA, Ji X, Zhang Z, Lemey P, Suchard MA. Relaxed Random Walks at Scale. Systematic Biology. PMID 32687171 DOI: 10.1093/Sysbio/Syaa056 |
0.576 |
|
2020 |
Lemey P, Hong S, Hill V, Baele G, Poletto C, Colizza V, O'Toole A, McCrone JT, Andersen KG, Worobey M, Nelson MI, Rambaut A, Suchard MA. Accommodating individual travel history, global mobility, and unsampled diversity in phylogeography: a SARS-CoV-2 case study. Biorxiv : the Preprint Server For Biology. PMID 32596695 DOI: 10.1101/2020.06.22.165464 |
0.316 |
|
2020 |
Düx A, Lequime S, Patrono LV, Vrancken B, Boral S, Gogarten JF, Hilbig A, Horst D, Merkel K, Prepoint B, Santibanez S, Schlotterbeck J, Suchard MA, Ulrich M, Widulin N, et al. Measles virus and rinderpest virus divergence dated to the sixth century BCE. Science (New York, N.Y.). 368: 1367-1370. PMID 32554594 DOI: 10.1126/Science.Aba9411 |
0.374 |
|
2020 |
Ji X, Zhang Z, Holbrook A, Nishimura A, Baele G, Rambaut A, Lemey P, Suchard MA. Gradients do grow on trees: a linear-time Molecular Biology and Evolution. PMID 32458974 DOI: 10.1093/Molbev/Msaa130 |
0.465 |
|
2020 |
Baele G, Gill MS, Bastide P, Lemey P, Suchard MA. Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST. Systematic Biology. PMID 32415977 DOI: 10.1093/Sysbio/Syaa037 |
0.45 |
|
2020 |
He WT, Ji X, He W, Dellicour S, Wang S, Li G, Zhang L, Gilbert M, Zhu H, Xing G, Veit M, Huang Z, Han GZ, Huang Y, Suchard MA, et al. Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus. Molecular Biology and Evolution. PMID 32407507 DOI: 10.1093/Molbev/Msaa117 |
0.56 |
|
2020 |
Mavian C, Pond SK, Marini S, Magalis BR, Vandamme AM, Dellicour S, Scarpino SV, Houldcroft C, Villabona-Arenas J, Paisie TK, Trovão NS, Boucher C, Zhang Y, Scheuermann RH, Gascuel O, ... ... Suchard MA, et al. Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America. PMID 32381734 DOI: 10.1073/Pnas.2007295117 |
0.345 |
|
2020 |
Sun J, He WT, Wang L, Lai A, Ji X, Zhai X, Li G, Suchard MA, Tian J, Zhou J, Veit M, Su S. COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives. Trends in Molecular Medicine. 26: 483-495. PMID 32359479 DOI: 10.1016/J.Molmed.2020.02.008 |
0.477 |
|
2020 |
Yang Q, Zhao X, Lemey P, Suchard MA, Bi Y, Shi W, Liu D, Qi W, Zhang G, Stenseth NC, Pybus OG, Tian H. Assessing the role of live poultry trade in community-structured transmission of avian influenza in China. Proceedings of the National Academy of Sciences of the United States of America. PMID 32123088 DOI: 10.1073/Pnas.1906954117 |
0.343 |
|
2020 |
Gill MS, Lemey P, Suchard MA, Rambaut A, Baele G. Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction. Molecular Biology and Evolution. PMID 32101295 DOI: 10.1093/Molbev/Msaa047 |
0.466 |
|
2020 |
Hong SL, Dellicour S, Vrancken B, Suchard MA, Pyne MT, Hillyard DR, Lemey P, Baele G. In Search of Covariates of HIV-1 Subtype B Spread in the United States-A Cautionary Tale of Large-Scale Bayesian Phylogeography. Viruses. 12. PMID 32033422 DOI: 10.3390/V12020182 |
0.334 |
|
2020 |
Holbrook AJ, Lemey P, Baele G, Dellicour S, Brockmann D, Rambaut A, Suchard MA. Massive Parallelization Boosts Big Bayesian Multidimensional Scaling Journal of Computational and Graphical Statistics. 1-14. DOI: 10.1080/10618600.2020.1754226 |
0.323 |
|
2020 |
Hassler G, Tolkoff MR, Allen WL, Ho LST, Lemey P, Suchard MA. Inferring Phenotypic Trait Evolution on Large Trees With Many Incomplete Measurements Journal of the American Statistical Association. 1-39. DOI: 10.1080/01621459.2020.1799812 |
0.335 |
|
2019 |
Kawaguchi ES, Suchard MA, Liu Z, Li G. A surrogate ℓ sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data. Statistics in Medicine. PMID 31814146 DOI: 10.1002/Sim.8438 |
0.403 |
|
2019 |
Faria NR, Vidal N, Lourenco J, Raghwani J, Sigaloff KCE, Tatem AJ, van de Vijver DAM, Pineda-Peña AC, Rose R, Wallis CL, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Muwonga J, Suchard MA, Rinke de Wit TF, et al. Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa. Plos Pathogens. 15: e1007976. PMID 31809523 DOI: 10.1371/Journal.Ppat.1007976 |
0.305 |
|
2019 |
Dellicour S, Lemey P, Artois J, Lam TT, Fusaro A, Monne I, Cattoli G, Kuznetsov D, Xenarios I, Dauphin G, Kalpravidh W, Von Dobschuetz S, Claes F, Newman SH, Suchard MA, et al. Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - application to H5N1 spread in the Mekong region. Bioinformatics (Oxford, England). PMID 31790143 DOI: 10.1093/Bioinformatics/Btz882 |
0.379 |
|
2019 |
Ho LST, Dinh V, Matsen FA, Suchard MA. On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model. Journal of Mathematical Biology. PMID 31754778 DOI: 10.1007/S00285-019-01453-1 |
0.389 |
|
2019 |
Bletsa M, Suchard MA, Ji X, Gryseels S, Vrancken B, Baele G, Worobey M, Lemey P. Divergence dating using mixed effects clock modelling: An application to HIV-1. Virus Evolution. 5: vez036. PMID 31720009 DOI: 10.1093/Ve/Vez036 |
0.569 |
|
2019 |
Baele G, Ayres DL, Rambaut A, Suchard MA, Lemey P. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE. Methods in Molecular Biology (Clifton, N.J.). 1910: 691-722. PMID 31278682 DOI: 10.1007/978-1-4939-9074-0_23 |
0.392 |
|
2019 |
Ayres DL, Cummings MP, Baele G, Darling AE, Lewis PO, Swofford DL, Huelsenbeck JP, Lemey P, Rambaut A, Suchard MA. BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics. Systematic Biology. PMID 31034053 DOI: 10.1093/Sysbio/Syz020 |
0.353 |
|
2019 |
Membrebe JV, Suchard MA, Rambaut A, Baele G, Lemey P. Bayesian inference of evolutionary histories under time-dependent substitution rates. Molecular Biology and Evolution. PMID 31004175 DOI: 10.1093/Molbev/Msz094 |
0.45 |
|
2019 |
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, ... ... Suchard MA, et al. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. Plos Computational Biology. 15: e1006650. PMID 30958812 DOI: 10.1371/Journal.Pcbi.1006650 |
0.386 |
|
2019 |
Scotch M, Tahsin T, Weissenbacher D, O'Connor K, Magge A, Vaiente M, Suchard MA, Gonzalez-Hernandez G. Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography. Virus Evolution. 5: vey043. PMID 30838129 DOI: 10.1093/Ve/Vey043 |
0.391 |
|
2019 |
Kafetzopoulou LE, Pullan ST, Lemey P, Suchard MA, Ehichioya DU, Pahlmann M, Thielebein A, Hinzmann J, Oestereich L, Wozniak DM, Efthymiadis K, Schachten D, Koenig F, Matjeschk J, Lorenzen S, et al. Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak. Science (New York, N.Y.). 363: 74-77. PMID 30606844 DOI: 10.1126/Science.Aau9343 |
0.362 |
|
2018 |
Dinh V, Tung Ho LS, Suchard MA, Matsen FA. Consistency and convergence rate of phylogenetic inference via regularization. Annals of Statistics. 46: 1481-1512. PMID 30344357 DOI: 10.1214/17-Aos1592 |
0.38 |
|
2018 |
Baele G, Dellicour S, Suchard MA, Lemey P, Vrancken B. Recent advances in computational phylodynamics. Current Opinion in Virology. 31: 24-32. PMID 30248578 DOI: 10.1016/J.Coviro.2018.08.009 |
0.417 |
|
2018 |
Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, ... ... Suchard MA, et al. Genomic and epidemiological monitoring of yellow fever virus transmission potential. Science (New York, N.Y.). PMID 30139911 DOI: 10.1126/Science.Aat7115 |
0.367 |
|
2018 |
Schuemie MJ, Ryan PB, Hripcsak G, Madigan D, Suchard MA. Improving reproducibility by using high-throughput observational studies with empirical calibration. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 376. PMID 30082302 DOI: 10.1098/Rsta.2017.0356 |
0.358 |
|
2018 |
Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ, Rambaut A. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution. 4: vey016. PMID 29942656 DOI: 10.1093/Ve/Vey016 |
0.403 |
|
2018 |
Crawford FW, Ho LST, Suchard MA. Computational methods for birth-death processes. Wiley Interdisciplinary Reviews. Computational Statistics. 10. PMID 29942419 DOI: 10.1002/Wics.1423 |
0.622 |
|
2018 |
Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P. Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak. Nature Communications. 9: 2222. PMID 29884821 DOI: 10.1038/S41467-018-03763-2 |
0.342 |
|
2018 |
Reps JM, Schuemie MJ, Suchard MA, Ryan PB, Rijnbeek PR. Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data. Journal of the American Medical Informatics Association : Jamia. PMID 29718407 DOI: 10.1093/Jamia/Ocy032 |
0.335 |
|
2018 |
Schuemie MJ, Hripcsak G, Ryan PB, Madigan D, Suchard MA. Empirical confidence interval calibration for population-level effect estimation studies in observational healthcare data. Proceedings of the National Academy of Sciences of the United States of America. PMID 29531023 DOI: 10.1073/Pnas.1708282114 |
0.3 |
|
2018 |
Ho LST, Crawford FW, Suchard MA. Direct likelihood-based inference for discretely observed stochastic compartmental models of infectious disease The Annals of Applied Statistics. 12: 1993-2021. DOI: 10.1214/18-Aoas1141 |
0.592 |
|
2017 |
Vrancken B, Suchard MA, Lemey P. Accurate quantification of within- and between-host HBV evolutionary rates requires explicit transmission chain modelling. Virus Evolution. 3: vex028. PMID 29026650 DOI: 10.1093/Ve/Vex028 |
0.419 |
|
2017 |
Tolkoff MR, Alfaro ME, Baele G, Lemey P, Suchard MA. Phylogenetic Factor Analysis. Systematic Biology. PMID 28950376 DOI: 10.1093/Sysbio/Syx066 |
0.407 |
|
2017 |
Ho LST, Xu J, Crawford FW, Minin VN, Suchard MA. Birth/birth-death processes and their computable transition probabilities with biological applications. Journal of Mathematical Biology. PMID 28741177 DOI: 10.1007/S00285-017-1160-3 |
0.728 |
|
2017 |
Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, ... ... Suchard MA, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. PMID 28405027 DOI: 10.1038/Nature22040 |
0.385 |
|
2017 |
Al-Qahtani AA, Baele G, Khalaf N, Suchard MA, Al-Anazi MR, Abdo AA, Sanai FM, Al-Ashgar HI, Khan MQ, Al-Ahdal MN, Lemey P, Vrancken B. The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia. Scientific Reports. 7: 44947. PMID 28322313 DOI: 10.1038/Srep44947 |
0.367 |
|
2017 |
Baele G, Lemey P, Rambaut A, Suchard MA. Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST. Bioinformatics (Oxford, England). PMID 28200071 DOI: 10.1093/Bioinformatics/Btx088 |
0.44 |
|
2017 |
Baele G, Suchard MA, Rambaut A, Lemey P. Emerging Concepts of Data Integration in Pathogen Phylodynamics. Systematic Biology. 66: e47-e65. PMID 28173504 DOI: 10.1093/Sysbio/Syw054 |
0.456 |
|
2017 |
Magee D, Suchard MA, Scotch M. Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. Plos Computational Biology. 13: e1005389. PMID 28170397 DOI: 10.1371/Journal.Pcbi.1005389 |
0.406 |
|
2017 |
Cybis GB, Sinsheimer JS, Bedford T, Rambaut A, Lemey P, Suchard MA. Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza. Statistics in Medicine. PMID 28098392 DOI: 10.1002/Sim.7196 |
0.689 |
|
2016 |
Shaddox TR, Ryan PB, Schuemie MJ, Madigan D, Suchard MA. Hierarchical Models for Multiple, Rare Outcomes Using Massive Observational Healthcare Databases. Statistical Analysis and Data Mining. 9: 260-268. PMID 28503249 DOI: 10.1002/Sam.11324 |
0.344 |
|
2016 |
Baele G, Suchard MA, Bielejec F, Lemey P. Bayesian codon substitution modelling to identify sources of pathogen evolutionary rate variation. Microbial Genomics. 2: e000057. PMID 28348854 DOI: 10.1099/mgen.0.000057 |
0.328 |
|
2016 |
Gill MS, Tung Ho LS, Baele G, Lemey P, Suchard MA. A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution. Systematic Biology. PMID 27798403 DOI: 10.1093/Sysbio/Syw093 |
0.472 |
|
2016 |
Worobey M, Watts TD, McKay RA, Suchard MA, Granade T, Teuwen DE, Koblin BA, Heneine W, Lemey P, Jaffe HW. 1970s and 'Patient 0' HIV-1 genomes illuminate early HIV/AIDS history in North America. Nature. PMID 27783600 DOI: 10.1038/Nature19827 |
0.356 |
|
2016 |
Bielejec F, Baele G, Rodrigo AG, Suchard MA, Lemey P. Identifying predictors of time-inhomogeneous viral evolutionary processes. Virus Evolution. 2: vew023. PMID 27774306 DOI: 10.1093/Ve/Vew023 |
0.446 |
|
2016 |
Gill MS, Lemey P, Bennett SN, Biek R, Suchard MA. Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates. Systematic Biology. PMID 27368344 DOI: 10.1093/Sysbio/Syw050 |
0.389 |
|
2016 |
Baele G, Suchard MA, Rambaut A, Lemey P. Emerging concepts of data integration in pathogen phylodynamics. Systematic Biology. PMID 27288481 DOI: 10.1093/sysbio/syw054 |
0.333 |
|
2016 |
Hripcsak G, Ryan PB, Duke JD, Shah NH, Park RW, Huser V, Suchard MA, Schuemie MJ, DeFalco FJ, Perotte A, Banda JM, Reich CG, Schilling LM, Matheny ME, Meeker D, et al. Characterizing treatment pathways at scale using the OHDSI network. Proceedings of the National Academy of Sciences of the United States of America. PMID 27274072 DOI: 10.1073/Pnas.1510502113 |
0.304 |
|
2016 |
Bielejec F, Baele G, Vrancken B, Suchard MA, Rambaut A, Lemey P. SpreaD3: interactive visualisation of spatiotemporal history and trait evolutionary processes. Molecular Biology and Evolution. PMID 27189542 DOI: 10.1093/Molbev/Msw082 |
0.387 |
|
2016 |
Karcher MD, Palacios JA, Bedford T, Suchard MA, Minin VN. Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. Plos Computational Biology. 12: e1004789. PMID 26938243 DOI: 10.1371/Journal.Pcbi.1004789 |
0.641 |
|
2015 |
Trovão NS, Baele G, Vrancken B, Bielejec F, Suchard MA, Fargette D, Lemey P. Host ecology determines the dispersal patterns of a plant virus. Virus Evolution. 1: vev016. PMID 27774287 DOI: 10.1093/Ve/Vev016 |
0.428 |
|
2015 |
Cybis GB, Sinsheimer JS, Bedford T, Mather AE, Lemey P, Suchard MA. ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. The Annals of Applied Statistics. 9: 969-991. PMID 27053974 DOI: 10.1214/15-Aoas821 |
0.726 |
|
2015 |
Baele G, Lemey P, Suchard MA. Genealogical Working Distributions for Bayesian Model Testing with Phylogenetic Uncertainty. Systematic Biology. PMID 26526428 DOI: 10.1093/Sysbio/Syv083 |
0.454 |
|
2015 |
Crawford FW, Weiss RE, Suchard MA. SEX, LIES AND SELF-REPORTED COUNTS: BAYESIAN MIXTURE MODELS FOR HEAPING IN LONGITUDINAL COUNT DATA VIA BIRTH-DEATH PROCESSES. The Annals of Applied Statistics. 9: 572-596. PMID 26500711 DOI: 10.1214/15-Aoas809 |
0.673 |
|
2015 |
Gräf T, Vrancken B, Maletich Junqueira D, de Medeiros RM, Suchard MA, Lemey P, Esteves de Matos Almeida S, Pinto AR. Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in Brazil. Journal of Virology. 89: 12341-8. PMID 26423943 DOI: 10.1128/Jvi.01681-15 |
0.305 |
|
2015 |
Trovão NS, Suchard MA, Baele G, Gilbert M, Lemey P. Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1. Molecular Biology and Evolution. PMID 26341298 DOI: 10.1093/Molbev/Msv185 |
0.376 |
|
2015 |
Machkovech HM, Bedford T, Suchard MA, Bloom JD. Positive Selection in CD8+ T-Cell Epitopes of Influenza Virus Nucleoprotein Revealed by a Comparative Analysis of Human and Swine Viral Lineages. Journal of Virology. 89: 11275-83. PMID 26311880 DOI: 10.1128/Jvi.01571-15 |
0.306 |
|
2015 |
Vrancken B, Baele G, Vandamme AM, van Laethem K, Suchard MA, Lemey P. Disentangling the impact of within-host evolution and transmission dynamics on the tempo of HIV-1 evolution. Aids (London, England). 29: 1549-56. PMID 26244394 DOI: 10.1097/Qad.0000000000000731 |
0.307 |
|
2015 |
Bedford T, Riley S, Barr IG, Broor S, Chadha M, Cox NJ, Daniels RS, Gunasekaran CP, Hurt AC, Kelso A, Klimov A, Lewis NS, Li X, McCauley JW, Odagiri T, ... ... Suchard MA, et al. Global circulation patterns of seasonal influenza viruses vary with antigenic drift. Nature. 523: 217-20. PMID 26053121 DOI: 10.1038/Nature14460 |
0.345 |
|
2015 |
Nelson MI, Viboud C, Vincent AL, Culhane MR, Detmer SE, Wentworth DE, Rambaut A, Suchard MA, Holmes EC, Lemey P. Global migration of influenza A viruses in swine. Nature Communications. 6: 6696. PMID 25813399 DOI: 10.1038/Ncomms7696 |
0.373 |
|
2015 |
Vrancken B, Lemey P, Rambaut A, Bedford T, Longdon B, Günthard HF, Suchard MA. Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution. Methods in Ecology and Evolution / British Ecological Society. 6: 67-82. PMID 25780554 DOI: 10.1111/2041-210X.12293 |
0.459 |
|
2015 |
Magee D, Beard R, Suchard MA, Lemey P, Scotch M. Combining phylogeography and spatial epidemiology to uncover predictors of H5N1 influenza A virus diffusion. Archives of Virology. 160: 215-24. PMID 25355432 DOI: 10.1007/S00705-014-2262-5 |
0.38 |
|
2015 |
Molak M, Suchard MA, Ho SY, Beilman DW, Shapiro B. Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA. Molecular Ecology Resources. 15: 81-6. PMID 24964386 DOI: 10.1111/1755-0998.12295 |
0.343 |
|
2014 |
Beard R, Magee D, Suchard MA, Lemey P, Scotch M. Generalized linear models for identifying predictors of the evolutionary diffusion of viruses. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2014: 23-8. PMID 25717395 |
0.335 |
|
2014 |
Pankey MS, Minin VN, Imholte GC, Suchard MA, Oakley TH. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences of the United States of America. 111: E4736-42. PMID 25336755 DOI: 10.1073/Pnas.1416574111 |
0.571 |
|
2014 |
Crawford FW, Minin VN, Suchard MA. Estimation for general birth-death processes. Journal of the American Statistical Association. 109: 730-747. PMID 25328261 DOI: 10.1080/01621459.2013.866565 |
0.719 |
|
2014 |
Faria NR, Rambaut A, Suchard MA, Baele G, Bedford T, Ward MJ, Tatem AJ, Sousa JD, Arinaminpathy N, Pépin J, Posada D, Peeters M, Pybus OG, Lemey P. HIV epidemiology. The early spread and epidemic ignition of HIV-1 in human populations. Science (New York, N.Y.). 346: 56-61. PMID 25278604 DOI: 10.1126/Science.1256739 |
0.331 |
|
2014 |
Strickland SL, Rife BD, Lamers SL, Nolan DJ, Veras NM, Prosperi MC, Burdo TH, Autissier P, Nowlin B, Goodenow MM, Suchard MA, Williams KC, Salemi M. Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS. The Journal of General Virology. 95: 2784-95. PMID 25205684 DOI: 10.1099/Vir.0.070318-0 |
0.35 |
|
2014 |
Bielejec F, Lemey P, Carvalho LM, Baele G, Rambaut A, Suchard MA. πBUSS: A parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios Bmc Bioinformatics. 15. PMID 24885610 DOI: 10.1186/1471-2105-15-133 |
0.369 |
|
2014 |
Nunes MR, Palacios G, Faria NR, Sousa EC, Pantoja JA, Rodrigues SG, Carvalho VL, Medeiros DB, Savji N, Baele G, Suchard MA, Lemey P, Vasconcelos PF, Lipkin WI. Air travel is associated with intracontinental spread of dengue virus serotypes 1-3 in Brazil. Plos Neglected Tropical Diseases. 8: e2769. PMID 24743730 DOI: 10.1371/Journal.Pntd.0002769 |
0.405 |
|
2014 |
Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu CH, Xie D, Suchard MA, Rambaut A, Drummond AJ. BEAST 2: A Software Platform for Bayesian Evolutionary Analysis Plos Computational Biology. 10. PMID 24722319 DOI: 10.1371/Journal.Pcbi.1003537 |
0.307 |
|
2014 |
Vrancken B, Rambaut A, Suchard MA, Drummond A, Baele G, Derdelinckx I, Van Wijngaerden E, Vandamme AM, Van Laethem K, Lemey P. The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates Plos Computational Biology. 10. PMID 24699231 DOI: 10.1371/Journal.Pcbi.1003505 |
0.387 |
|
2014 |
Bielejec F, Lemey P, Baele G, Rambaut A, Suchard MA. Inferring heterogeneous evolutionary processes through time: From sequence substitution to phylogeography Systematic Biology. 63: 493-504. PMID 24627184 DOI: 10.1093/Sysbio/Syu015 |
0.487 |
|
2014 |
Lemey P, Rambaut A, Bedford T, Faria N, Bielejec F, Baele G, Russell CA, Smith DJ, Pybus OG, Brockmann D, Suchard MA. Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. Plos Pathogens. 10: e1003932. PMID 24586153 DOI: 10.1371/Journal.Ppat.1003932 |
0.403 |
|
2014 |
Nylinder S, Lemey P, De Bruyn M, Suchard MA, Pfeil BE, Walsh N, Anderberg AA. On the biogeography of Centipeda: a species-tree diffusion approach. Systematic Biology. 63: 178-91. PMID 24335493 DOI: 10.1093/Sysbio/Syt102 |
0.343 |
|
2014 |
Mittal S, Madigan D, Burd RS, Suchard MA. High-dimensional, massive sample-size Cox proportional hazards regression for survival analysis. Biostatistics (Oxford, England). 15: 207-21. PMID 24096388 DOI: 10.1093/Biostatistics/Kxt043 |
0.33 |
|
2014 |
Schuemie MJ, Ryan PB, DuMouchel W, Suchard MA, Madigan D. Interpreting observational studies: why empirical calibration is needed to correct p-values. Statistics in Medicine. 33: 209-18. PMID 23900808 DOI: 10.1002/Sim.5925 |
0.311 |
|
2014 |
Weiss RE, Suchard MA. Comment on article by rubio and steel Bayesian Analysis. 9: 29-38. DOI: 10.1214/13-Ba870 |
0.484 |
|
2013 |
Doss CR, Suchard MA, Holmes I, Kato-Maeda M, Minin VN. Fitting Birth-Death Processes to Panel Data with Applications to Bacterial DNA Fingerprinting. The Annals of Applied Statistics. 7: 2315-2335. PMID 26702330 DOI: 10.1214/13-Aoas673 |
0.618 |
|
2013 |
Suchard MA, Simpson SE, Zorych I, Ryan P, Madigan D. Massive parallelization of serial inference algorithms for a complex generalized linear model. Acm Transactions On Modeling and Computer Simulation : a Publication of the Association For Computing Machinery. 23. PMID 25328363 DOI: 10.1145/2414416.2414791 |
0.35 |
|
2013 |
Shi M, Lemey P, Singh Brar M, Suchard MA, Murtaugh MP, Carman S, D'Allaire S, Delisle B, Lambert MÈ, Gagnon CA, Ge L, Qu Y, Yoo D, Holmes EC, Chi-Ching Leung F. The spread of type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) in North America: a phylogeographic approach. Virology. 447: 146-54. PMID 24210109 DOI: 10.1016/J.Virol.2013.08.028 |
0.363 |
|
2013 |
Simpson SE, Madigan D, Zorych I, Schuemie MJ, Ryan PB, Suchard MA. Multiple self-controlled case series for large-scale longitudinal observational databases. Biometrics. 69: 893-902. PMID 24117144 DOI: 10.1111/Biom.12078 |
0.311 |
|
2013 |
Mather AE, Reid SW, Maskell DJ, Parkhill J, Fookes MC, Harris SR, Brown DJ, Coia JE, Mulvey MR, Gilmour MW, Petrovska L, de Pinna E, Kuroda M, Akiba M, Izumiya H, ... ... Suchard MA, et al. Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts. Science (New York, N.Y.). 341: 1514-7. PMID 24030491 DOI: 10.1126/Science.1240578 |
0.301 |
|
2013 |
Crawford FW, Suchard MA. Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees. Systematic Biology. 62: 439-55. PMID 23417679 DOI: 10.1093/Sysbio/Syt010 |
0.629 |
|
2013 |
Cybis GB, Sinsheimer JS, Lemey P, Suchard MA. Graph hierarchies for phylogeography. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120206. PMID 23382428 DOI: 10.1098/Rstb.2012.0206 |
0.721 |
|
2013 |
Faria NR, Suchard MA, Rambaut A, Streicker DG, Lemey P. Simultaneously reconstructing viral cross-species transmission history and identifying the underlying constraints. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120196. PMID 23382420 DOI: 10.1098/Rstb.2012.0196 |
0.38 |
|
2013 |
Wu CH, Suchard MA, Drummond AJ. Bayesian selection of nucleotide substitution models and their site assignments. Molecular Biology and Evolution. 30: 669-88. PMID 23233462 DOI: 10.1093/Molbev/Mss258 |
0.441 |
|
2013 |
Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA. Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci. Molecular Biology and Evolution. 30: 713-24. PMID 23180580 DOI: 10.1093/Molbev/Mss265 |
0.434 |
|
2013 |
Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P. Accurate model selection of relaxed molecular clocks in bayesian phylogenetics. Molecular Biology and Evolution. 30: 239-43. PMID 23090976 DOI: 10.1093/Molbev/Mss243 |
0.417 |
|
2013 |
Silverman N, Suchard M. Predicting Horse Race Winners Through A Regularized Conditional Logistic Regression With Frailty The Journal of Prediction Markets. 7: 43-52. DOI: 10.5750/Jpm.V7I1.595 |
0.36 |
|
2013 |
Ryan P, Suchard MA, Schuemie M, Madigan D. Learning From Epidemiology: Interpreting Observational Database Studies for the Effects of Medical Products Statistics in Biopharmaceutical Research. 5: 170-179. DOI: 10.1080/19466315.2013.791638 |
0.332 |
|
2012 |
Nunes MR, Faria NR, Vasconcelos HB, Medeiros DB, Silva de Lima CP, Carvalho VL, Pinto da Silva EV, Cardoso JF, Sousa EC, Nunes KN, Rodrigues SG, Abecasis AB, Suchard MA, Lemey P, Vasconcelos PF. Phylogeography of dengue virus serotype 4, Brazil, 2010-2011. Emerging Infectious Diseases. 18: 1858-64. PMID 23092706 DOI: 10.3201/Eid1811.120217 |
0.38 |
|
2012 |
Lemey P, Minin VN, Bielejec F, Kosakovsky Pond SL, Suchard MA. A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection. Bioinformatics (Oxford, England). 28: 3248-56. PMID 23064000 DOI: 10.1093/Bioinformatics/Bts580 |
0.63 |
|
2012 |
Pybus OG, Suchard MA, Lemey P, Bernardin FJ, Rambaut A, Crawford FW, Gray RR, Arinaminpathy N, Stramer SL, Busch MP, Delwart EL. Unifying the spatial epidemiology and molecular evolution of emerging epidemics. Proceedings of the National Academy of Sciences of the United States of America. 109: 15066-71. PMID 22927414 DOI: 10.1073/Pnas.1206598109 |
0.622 |
|
2012 |
Gong YN, Chen GW, Suchard MA. A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses. Computational Biology and Chemistry. 39: 20-8. PMID 22858722 DOI: 10.1016/J.Compbiolchem.2012.06.004 |
0.374 |
|
2012 |
Weinert LA, Welch JJ, Suchard MA, Lemey P, Rambaut A, Fitzgerald JR. Molecular dating of human-to-bovid host jumps by Staphylococcus aureus reveals an association with the spread of domestication Biology Letters. 8: 829-832. PMID 22628096 DOI: 10.1098/Rsbl.2012.0290 |
0.348 |
|
2012 |
Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Molecular Biology and Evolution. 29: 2157-67. PMID 22403239 DOI: 10.1093/Molbev/Mss084 |
0.457 |
|
2012 |
Drummond AJ, Suchard MA, Xie D, Rambaut A. Bayesian phylogenetics with BEAUti and the BEAST 1.7 Molecular Biology and Evolution. 29: 1969-1973. PMID 22367748 DOI: 10.1093/Molbev/Mss075 |
0.411 |
|
2012 |
Kemal KS, Ramirez CM, Burger H, Foley B, Mayers D, Klimkait T, Hamy F, Anastos K, Petrovic K, Minin VN, Suchard MA, Weiser B. Recombination between variants from genital tract and plasma: evolution of multidrug-resistant HIV type 1. Aids Research and Human Retroviruses. 28: 1766-74. PMID 22364185 DOI: 10.1089/Aid.2011.0383 |
0.583 |
|
2012 |
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology. 61: 539-42. PMID 22357727 DOI: 10.1093/Sysbio/Sys029 |
0.427 |
|
2012 |
Allicock OM, Lemey P, Tatem AJ, Pybus OG, Bennett SN, Mueller BA, Suchard MA, Foster JE, Rambaut A, Carrington CVF. Phylogeography and population dynamics of dengue viruses in the Americas Molecular Biology and Evolution. 29: 1533-1543. PMID 22319149 DOI: 10.1093/Molbev/Msr320 |
0.405 |
|
2012 |
Faria NR, Hodges-Mameletzis I, Silva JC, Rodés B, Erasmus S, Paolucci S, Ruelle J, Pieniazek D, Taveira N, Treviño A, Gonçalves MF, Jallow S, Xu L, Camacho RJ, Soriano V, ... ... Suchard MA, et al. Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A. The Journal of General Virology. 93: 889-99. PMID 22190015 DOI: 10.1099/Vir.0.038638-0 |
0.37 |
|
2012 |
Tom JA, Sinsheimer JS, Suchard MA. Does history repeat itself? Wavelets and the phylodynamics of influenza A. Molecular Biology and Evolution. 29: 1367-77. PMID 22160768 DOI: 10.1093/Molbev/Msr305 |
0.817 |
|
2012 |
Crawford FW, Suchard MA. Transition probabilities for general birth-death processes with applications in ecology, genetics, and evolution. Journal of Mathematical Biology. 65: 553-80. PMID 21984359 DOI: 10.1007/S00285-011-0471-Z |
0.573 |
|
2012 |
Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Systematic Biology. 61: 170-3. PMID 21963610 DOI: 10.1093/Sysbio/Syr100 |
0.363 |
|
2012 |
Faria NR, Suchard MA, Abecasis A, Sousa JD, Ndembi N, Bonfim I, Camacho RJ, Vandamme AM, Lemey P. Phylodynamics of the HIV-1 CRF02_AG clade in Cameroon. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 12: 453-60. PMID 21565285 DOI: 10.1016/J.Meegid.2011.04.028 |
0.396 |
|
2011 |
Telesca D, Müller P, Kornblau SM, Suchard MA, Ji Y. Modeling Protein Expression and Protein Signaling Pathways. Journal of the American Statistical Association. 107: 1372-1384. PMID 26246646 DOI: 10.1080/01621459.2012.706121 |
0.331 |
|
2011 |
Faria NR, Suchard MA, Rambaut A, Lemey P. Toward a quantitative understanding of viral phylogeography Current Opinion in Virology. 1: 423-429. PMID 22440846 DOI: 10.1016/J.Coviro.2011.10.003 |
0.372 |
|
2011 |
Weiss RE, Jia J, Suchard MA. A Bayesian model for the common effects of multiple predictors on mixed outcomes. Interface Focus. 1: 886-94. PMID 22419987 DOI: 10.1098/Rsfs.2011.0041 |
0.637 |
|
2011 |
Bielejec F, Rambaut A, Suchard MA, Lemey P. SPREAD: Spatial phylogenetic reconstruction of evolutionary dynamics Bioinformatics. 27: 2910-2912. PMID 21911333 DOI: 10.1093/Bioinformatics/Btr481 |
0.308 |
|
2011 |
Edwards CJ, Suchard MA, Lemey P, Welch JJ, Barnes I, Fulton TL, Barnett R, O'Connell TC, Coxon P, Monaghan N, Valdiosera CE, Lorenzen ED, Willerslev E, Baryshnikov GF, Rambaut A, et al. Ancient hybridization and an Irish origin for the modern polar bear matriline. Current Biology : Cb. 21: 1251-8. PMID 21737280 DOI: 10.1016/J.Cub.2011.05.058 |
0.324 |
|
2011 |
Nelson MI, Lemey P, Tan Y, Vincent A, LamTommy TTY, Detmer S, Viboud C, Suchard MA, Rambaut A, Holmes EC, Gramer M. Spatial dynamics of human-origin H1 influenza a virus in north american swine Plos Pathogens. 7. PMID 21695237 DOI: 10.1371/Journal.Ppat.1002077 |
0.365 |
|
2011 |
Huelsenbeck JP, Alfaro ME, Suchard MA. Biologically inspired phylogenetic models strongly outperform the no common mechanism model. Systematic Biology. 60: 225-32. PMID 21252385 DOI: 10.1093/Sysbio/Syq089 |
0.379 |
|
2011 |
Edo-Matas D, Lemey P, Tom JA, Serna-Bolea C, van den Blink AE, van 't Wout AB, Schuitemaker H, Suchard MA. Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models. Molecular Biology and Evolution. 28: 1605-16. PMID 21135151 DOI: 10.1093/Molbev/Msq326 |
0.81 |
|
2011 |
Gray RR, Tatem AJ, Johnson JA, Alekseyenko AV, Pybus OG, Suchard MA, Salemi M. Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. Molecular Biology and Evolution. 28: 1593-603. PMID 21112962 DOI: 10.1093/Molbev/Msq319 |
0.389 |
|
2011 |
Shapiro B, Ho SYW, Drummond AJ, Suchard MA, Pybus OG, Rambaut A. A bayesian phylogenetic method to estimate unknown sequence ages Molecular Biology and Evolution. 28: 879-887. PMID 20889726 DOI: 10.1093/Molbev/Msq262 |
0.395 |
|
2010 |
Tom JA, Sinsheimer JS, Suchard MA. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. The Annals of Applied Statistics. 4: 1722-1748. PMID 26681992 DOI: 10.1214/10-Aoas349 |
0.809 |
|
2010 |
Zhou H, Lange K, Suchard MA. Graphics Processing Units and High-Dimensional Optimization. Statistical Science : a Review Journal of the Institute of Mathematical Statistics. 25: 311-324. PMID 21847315 DOI: 10.1214/10-Sts336 |
0.301 |
|
2010 |
Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, Jalal N, Faouzi A, Echevarría JE, Morón SV, Rambaut A, Campiz N, Tatem AJ, Holmes EC, Bourhy H. Phylodynamics and Human-mediated dispersal of a zoonotic virus Plos Pathogens. 6. PMID 21060816 DOI: 10.1371/Journal.Ppat.1001166 |
0.375 |
|
2010 |
Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 19: 419-438. PMID 20877443 DOI: 10.1198/Jcgs.2010.10016 |
0.38 |
|
2010 |
Bloomquist EW, Lemey P, Suchard MA. Three roads diverged? Routes to phylogeographic inference. Trends in Ecology & Evolution. 25: 626-32. PMID 20863591 DOI: 10.1016/J.Tree.2010.08.010 |
0.731 |
|
2010 |
Drummond AJ, Suchard MA. Bayesian random local clocks, or one rate to rule them all. Bmc Biology. 8: 114. PMID 20807414 DOI: 10.1186/1741-7007-8-114 |
0.365 |
|
2010 |
Auguste AJ, Lemey P, Pybus OG, Suchard MA, Salas RA, Adesiyun AA, Barrett AD, Tesh RB, Weaver SC, Carrington CV. Yellow fever virus maintenance in Trinidad and its dispersal throughout the Americas. Journal of Virology. 84: 9967-77. PMID 20631128 DOI: 10.1128/Jvi.00588-10 |
0.394 |
|
2010 |
Bloomquist EW, Suchard MA. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework. Systematic Biology. 59: 27-41. PMID 20525618 DOI: 10.1093/Sysbio/Syp076 |
0.757 |
|
2010 |
Shi B, Kitchen C, Weiser B, Mayers D, Foley B, Kemal K, Anastos K, Suchard M, Parker M, Brunner C, Burger H. Evolution and recombination of genes encoding HIV-1 drug resistance and tropism during antiretroviral therapy. Virology. 404: 5-20. PMID 20451945 DOI: 10.1016/J.Virol.2010.04.008 |
0.324 |
|
2010 |
Firth C, Kitchen A, Shapiro B, Suchard MA, Holmes EC, Rambaut A. Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses Molecular Biology and Evolution. 27: 2038-2051. PMID 20363828 DOI: 10.1093/Molbev/Msq088 |
0.414 |
|
2010 |
Campos PF, Willerslev E, Sher A, Orlando L, Axelsson E, Tikhonov A, Aaris-Sørensen K, Greenwood AD, Kahlke RD, Kosintsev P, Krakhmalnaya T, Kuznetsova T, Lemey P, MacPhee R, Norris CA, ... ... Suchard MA, et al. Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics. Proceedings of the National Academy of Sciences of the United States of America. 107: 5675-80. PMID 20212118 DOI: 10.1073/Pnas.0907189107 |
0.345 |
|
2010 |
Lemey P, Rambaut A, Welch JJ, Suchard MA. Phylogeography takes a relaxed random walk in continuous space and time Molecular Biology and Evolution. 27: 1877-1885. PMID 20203288 DOI: 10.1093/Molbev/Msq067 |
0.437 |
|
2010 |
Bennett SN, Drummond AJ, Kapan DD, Suchard MA, Muñoz-Jordán JL, Pybus OG, Holmes EC, Gubler DJ. Epidemic dynamics revealed in dengue evolution. Molecular Biology and Evolution. 27: 811-8. PMID 19965886 DOI: 10.1093/Molbev/Msp285 |
0.459 |
|
2009 |
Kitchen CM, Kroll J, Kuritzkes DR, Bloomquist E, Deeks SG, Suchard MA. Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment. Computational Statistics & Data Analysis. 53: 766-775. PMID 20442796 DOI: 10.1016/J.Csda.2008.06.007 |
0.729 |
|
2009 |
Lemey P, Suchard M, Rambaut A. Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm. Plos Currents. 1: RRN1031. PMID 20029613 DOI: 10.1371/Currents.Rrn1031 |
0.445 |
|
2009 |
Lemey P, Rambaut A, Drummond AJ, Suchard MA. Bayesian phylogeography finds its roots Plos Computational Biology. 5. PMID 19779555 DOI: 10.1371/Journal.Pcbi.1000520 |
0.451 |
|
2009 |
Liang LJ, Weiss RE, Redelings B, Suchard MA. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics (Oxford, England). 25: 2530-6. PMID 19661240 DOI: 10.1093/Bioinformatics/Btp473 |
0.691 |
|
2009 |
Suchard MA, Rambaut A. Many-core algorithms for statistical phylogenetics Bioinformatics. 25: 1370-1376. PMID 19369496 DOI: 10.1093/Bioinformatics/Btp244 |
0.417 |
|
2009 |
O'Brien JD, Minin VN, Suchard MA. Learning to count: robust estimates for labeled distances between molecular sequences. Molecular Biology and Evolution. 26: 801-14. PMID 19131426 DOI: 10.1093/Molbev/Msp003 |
0.662 |
|
2009 |
McBride AJ, Cerqueira GM, Suchard MA, Moreira AN, Zuerner RL, Reis MG, Haake DA, Ko AI, Dellagostin OA. Genetic diversity of the Leptospiral immunoglobulin-like (Lig) genes in pathogenic Leptospira spp. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 196-205. PMID 19028604 DOI: 10.1016/J.Meegid.2008.10.012 |
0.31 |
|
2009 |
Bloomquist EW, Dorman KS, Suchard MA. StepBrothers: inferring partially shared ancestries among recombinant viral sequences. Biostatistics (Oxford, England). 10: 106-20. PMID 18562348 DOI: 10.1093/Biostatistics/Kxn019 |
0.799 |
|
2008 |
Drummond AJ, Suchard MA. Fully Bayesian tests of neutrality using genealogical summary statistics. Bmc Genetics. 9: 68. PMID 18976476 DOI: 10.1186/1471-2156-9-68 |
0.397 |
|
2008 |
Alekseyenko AV, Lee CJ, Suchard MA. Wagner and Dollo: a stochastic duet by composing two parsimonious solos. Systematic Biology. 57: 772-84. PMID 18853363 DOI: 10.1080/10635150802434394 |
0.463 |
|
2008 |
Minin VN, Suchard MA. Fast, accurate and simulation-free stochastic mapping. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 363: 3985-95. PMID 18852111 DOI: 10.1098/Rstb.2008.0176 |
0.609 |
|
2008 |
O'Brien JD, She ZS, Suchard MA. Dating the time of viral subtype divergence. Bmc Evolutionary Biology. 8: 172. PMID 18541033 DOI: 10.1186/1471-2148-8-172 |
0.422 |
|
2008 |
Minin VN, Bloomquist EW, Suchard MA. Smooth skyride through a rough skyline: Bayesian coalescent-based inference of population dynamics. Molecular Biology and Evolution. 25: 1459-71. PMID 18408232 DOI: 10.1093/Molbev/Msn090 |
0.801 |
|
2008 |
Wong KM, Suchard MA, Huelsenbeck JP. Alignment uncertainty and genomic analysis. Science (New York, N.Y.). 319: 473-6. PMID 18218900 DOI: 10.1126/Science.1151532 |
0.366 |
|
2008 |
Minin VN, Suchard MA. Counting labeled transitions in continuous-time Markov models of evolution. Journal of Mathematical Biology. 56: 391-412. PMID 17874105 DOI: 10.1007/S00285-007-0120-8 |
0.605 |
|
2008 |
Stanczak CM, Chen Z, Nelson SF, Suchard M, McCabe ER, McGhee S. Representational oligonucleotide microarray analysis (ROMA) and comparison of binning and change-point methods of analysis: application to detection of del22q11.2 (DiGeorge) syndrome. Human Mutation. 29: 176-81. PMID 17694540 DOI: 10.1002/Humu.20593 |
0.318 |
|
2008 |
Suchard MA, Lange K, Sinsheimer JS. Efficiency of Protein Production from mRNA Journal of Statistical Theory and Practice. 2: 173-182. DOI: 10.1080/15598608.2008.10411869 |
0.649 |
|
2008 |
Ferreira MAR, Suchard MA. Bayesian analysis of elapsed times in continuous-time Markov chains Canadian Journal of Statistics. 36: 355-368. DOI: 10.1002/Cjs.5550360302 |
0.366 |
|
2007 |
Huelsenbeck JP, Suchard MA. A nonparametric method for accommodating and testing across-site rate variation. Systematic Biology. 56: 975-87. PMID 18075934 DOI: 10.1080/10635150701670569 |
0.359 |
|
2007 |
Redelings BD, Suchard MA. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. Bmc Evolutionary Biology. 7: 40. PMID 17359539 DOI: 10.1186/1471-2148-7-40 |
0.412 |
|
2007 |
Minin VN, Dorman KS, Fang F, Suchard MA. Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes. Genetics. 175: 1773-85. PMID 17194781 DOI: 10.1534/Genetics.106.066258 |
0.747 |
|
2007 |
Fang F, Ding J, Minin VN, Suchard MA, Dorman KS. cBrother: relaxing parental tree assumptions for Bayesian recombination detection. Bioinformatics (Oxford, England). 23: 507-8. PMID 17145740 DOI: 10.1093/Bioinformatics/Btl613 |
0.726 |
|
2007 |
Guo H, Weiss RE, Gu X, Suchard MA. Time squared: repeated measures on phylogenies. Molecular Biology and Evolution. 24: 352-62. PMID 17079699 DOI: 10.1093/Molbev/Msl165 |
0.614 |
|
2007 |
Rajaram ML, Minin VN, Suchard MA, Dorman KS. Hot and cold: Spatial fluctuation in HIV-1 recombination rates Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 707-714. DOI: 10.1109/BIBE.2007.4375638 |
0.703 |
|
2006 |
Kitchen CM, Lu J, Suchard MA, Hoh R, Martin JN, Kuritzkes DR, Deeks SG. Continued evolution in gp41 after interruption of enfuvirtide in subjects with advanced HIV type 1 disease. Aids Research and Human Retroviruses. 22: 1260-6. PMID 17209769 DOI: 10.1089/Aid.2006.22.1260 |
0.372 |
|
2006 |
Suchard MA, Redelings BD. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics (Oxford, England). 22: 2047-8. PMID 16679334 DOI: 10.1093/Bioinformatics/Btl175 |
0.414 |
|
2005 |
Suchard MA, Weiss RE, Sinsheimer JS. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 61: 665-73. PMID 16135017 DOI: 10.1111/J.1541-0420.2005.00352.X |
0.742 |
|
2005 |
Redelings BD, Suchard MA. Joint Bayesian estimation of alignment and phylogeny. Systematic Biology. 54: 401-18. PMID 16012107 DOI: 10.1080/10635150590947041 |
0.414 |
|
2005 |
Minin VN, Dorman KS, Fang F, Suchard MA. Dual multiple change-point model leads to more accurate recombination detection. Bioinformatics (Oxford, England). 21: 3034-42. PMID 15914546 DOI: 10.1093/Bioinformatics/Bti459 |
0.748 |
|
2005 |
Suchard MA. Stochastic models for horizontal gene transfer: taking a random walk through tree space. Genetics. 170: 419-31. PMID 15781714 DOI: 10.1534/Genetics.103.025692 |
0.397 |
|
2004 |
Kitchen CM, Philpott S, Burger H, Weiser B, Anastos K, Suchard MA. Evolution of human immunodeficiency virus type 1 coreceptor usage during antiretroviral Therapy: a Bayesian approach. Journal of Virology. 78: 11296-302. PMID 15452249 DOI: 10.1128/Jvi.78.20.11296-11302.2004 |
0.376 |
|
2004 |
Haake DA, Suchard MA, Kelley MM, Dundoo M, Alt DP, Zuerner RL. Molecular evolution and mosaicism of leptospiral outer membrane proteins involves horizontal DNA transfer. Journal of Bacteriology. 186: 2818-28. PMID 15090524 DOI: 10.1128/Jb.186.9.2818-2828.2004 |
0.339 |
|
2003 |
Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Applied Bioinformatics. 2: 131-44. PMID 15130798 |
0.787 |
|
2003 |
Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. Hierarchical phylogenetic models for analyzing multipartite sequence data. Systematic Biology. 52: 649-64. PMID 14530132 DOI: 10.1080/10635150390238879 |
0.783 |
|
2003 |
D'Orsogna MR, Suchard MA, Chou T. Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 021925. PMID 14525024 DOI: 10.1103/Physreve.68.021925 |
0.328 |
|
2003 |
Paraskevis D, Lemey P, Salemi M, Suchard M, Van De Peer Y, Vandamme AM. Analysis of the Evolutionary Relationships of HIV-1 and SIVcpz Sequences Using Bayesian Inference: Implications for the Origin of HIV-1 Molecular Biology and Evolution. 20: 1986-1996. PMID 12949143 DOI: 10.1093/Molbev/Msg207 |
0.334 |
|
2003 |
Suchard MA, Weiss RE, Sinsheimer JS. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Systematic Biology. 52: 48-54. PMID 12554439 DOI: 10.1080/10635150390132713 |
0.766 |
|
2003 |
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. Inferring spatial phylogenetic variation along nucleotide sequences: A multiple changepoint model Journal of the American Statistical Association. 98: 427-437. DOI: 10.1198/016214503000215 |
0.82 |
|
2003 |
Suchard MA, Weiss RE, Sinsheimer JS, Dorman KS, Patel M, McCabe ERB. Evolutionary Similarity Among Genes Journal of the American Statistical Association. 98: 653-662. DOI: 10.1198/016214503000000558 |
0.777 |
|
2002 |
Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Systematic Biology. 51: 715-28. PMID 12396586 DOI: 10.1080/10635150290102384 |
0.797 |
|
2001 |
Suchard MA, Bailey JN, Elashoff DA, Sinsheimer JS. SNPing away at candidate genes Genetic Epidemiology. 21: S643-S648. PMID 11793754 DOI: 10.1002/Gepi.2001.21.S1.S643 |
0.666 |
|
2001 |
Suchard MA, Weiss RE, Sinsheimer JS. Bayesian selection of continuous-time Markov chain evolutionary models. Molecular Biology and Evolution. 18: 1001-13. PMID 11371589 DOI: 10.1093/Oxfordjournals.Molbev.A003872 |
0.766 |
|
2000 |
Chitnavis J, Sinsheimer JS, Suchard MA, Clipsham K, Carr AJ. End-stage coxarthrosis and gonarthrosis. Aetiology, clinical patterns and radiological features of idiopathic osteoarthritis Rheumatology. 39: 612-619. PMID 10888705 DOI: 10.1093/Rheumatology/39.6.612 |
0.631 |
|
1999 |
Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. General practitioners' views on genetic screening for common diseases British Journal of General Practice. 49: 45-46. PMID 10622017 |
0.61 |
|
1999 |
Bailey JN, Suchard MA, Smalley SL, Sinsheimer JS. Search for a gene x environment interaction: G x E hunt Genetic Epidemiology. 17: S491-S496. PMID 10597481 DOI: 10.1002/Gepi.1370170779 |
0.635 |
|
1999 |
Suchard MA, Yudkin P, Sinsheimer JS. Are general practitioners willing and able to provide genetic services for common diseases? Journal of Genetic Counseling. 8: 301-311. DOI: 10.1023/A:1022934316284 |
0.636 |
|
Show low-probability matches. |