| Year |
Citation |
Score |
| 2023 |
Devens HR, Davidson PL, Byrne M, Wray GA. Hybrid Epigenomes Reveal Extensive Local Genetic Changes to Chromatin Accessibility Contribute to Divergence in Embryonic Gene Expression Between Species. Molecular Biology and Evolution. 40. PMID 37823438 DOI: 10.1093/molbev/msad222 |
0.38 |
|
| 2023 |
Massri AJ, McDonald B, Wray GA, McClay DR. Feedback circuits are numerous in embryonic gene regulatory networks and offer a stabilizing influence on evolution of those networks. Evodevo. 14: 10. PMID 37322563 DOI: 10.1186/s13227-023-00214-y |
0.739 |
|
| 2023 |
Henry JJ, Wray GA, Raff RA. Mechanism of an Alternate Type of Echinoderm Blastula Formation: The Wrinkled Blastula of the Sea Urchin Heliocidaris erythrogramma: (direct development/echinoderm development/morphogenesis/sea urchin embryos/wrinkled blastula). Development, Growth & Differentiation. 33: 317-328. PMID 37281034 DOI: 10.1111/j.1440-169X.1991.00317.x |
0.642 |
|
| 2023 |
Devens HR, Davidson PL, Byrne M, Wray GA. Hybrid epigenomes reveal extensive local genetic changes to chromatin accessibility contribute to divergence in embryonic gene expression between species. Biorxiv : the Preprint Server For Biology. PMID 36711588 DOI: 10.1101/2023.01.04.522781 |
0.392 |
|
| 2022 |
Davidson PL, Guo H, Swart JS, Massri AJ, Edgar A, Wang L, Berrio A, Devens HR, Koop D, Cisternas P, Zhang H, Zhang Y, Byrne M, Fan G, Wray GA. Recent reconfiguration of an ancient developmental gene regulatory network in Heliocidaris sea urchins. Nature Ecology & Evolution. PMID 36266460 DOI: 10.1038/s41559-022-01906-9 |
0.839 |
|
| 2022 |
Ketchum RN, Davidson PL, Smith EG, Wray GA, Burt JA, Ryan JF, Reitzel AM. A chromosome-level genome assembly of the highly heterozygous sea urchin Echinometra sp. EZ reveals adaptation in the regulatory regions of stress response genes. Genome Biology and Evolution. PMID 36161313 DOI: 10.1093/gbe/evac144 |
0.343 |
|
| 2022 |
Davidson PL, Byrne M, Wray GA. Evolutionary changes in the chromatin landscape contribute to reorganization of a developmental gene network during rapid life history evolution in sea urchins. Molecular Biology and Evolution. PMID 35946348 DOI: 10.1093/molbev/msac172 |
0.441 |
|
| 2021 |
Wray GA. Extreme phenotypic divergence and the evolution of development. Current Topics in Developmental Biology. 146: 79-112. PMID 35152987 DOI: 10.1016/bs.ctdb.2021.10.004 |
0.317 |
|
| 2021 |
Massri AJ, Greenstreet L, Afanassiev A, Berrio A, Wray GA, Schiebinger G, McClay DR. Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo. Development (Cambridge, England). PMID 34463740 DOI: 10.1242/dev.198614 |
0.798 |
|
| 2021 |
Byrne M, Koop D, Strbenac D, Cisternas P, Yang JYH, Davidson PL, Wray G. Transcriptomic analysis of Nodal - and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae). Marine Genomics. 100857. PMID 33676872 DOI: 10.1016/j.margen.2021.100857 |
0.331 |
|
| 2021 |
Massri AJ, Schiebinger GR, Berrio A, Wang L, Wray GA, McClay DR. Methodologies for Following EMT In Vivo at Single Cell Resolution. Methods in Molecular Biology (Clifton, N.J.). 2179: 303-314. PMID 32939729 DOI: 10.1007/978-1-0716-0779-4_23 |
0.779 |
|
| 2020 |
Berrio A, Gartner V, Wray GA. Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function. Peerj. 8: e10234. PMID 33088633 DOI: 10.7717/peerj.10234 |
0.805 |
|
| 2020 |
Devens HR, Davidson PL, Deaker DJ, Smith KE, Wray GA, Byrne M. Ocean acidification induces distinct transcriptomic responses across life history stages of the sea urchin Heliocidaris erythrogramma. Molecular Ecology. PMID 33002253 DOI: 10.1111/mec.15664 |
0.336 |
|
| 2020 |
Davidson PL, Guo H, Wang L, Berrio A, Zhang H, Chang Y, Soborowski AL, McClay DR, Fan G, Wray GA. Chromosomal-level genome assembly of the sea urchin Lytechinus variegatus substantially improves functional genomic analyses. Genome Biology and Evolution. PMID 32433766 DOI: 10.1093/Gbe/Evaa101 |
0.795 |
|
| 2020 |
Berrio A, Haygood R, Wray GA. Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral. Bmc Genomics. 21: 359. PMID 32404186 DOI: 10.1186/S12864-020-6752-4 |
0.797 |
|
| 2020 |
Byrne M, Koop D, Strbenac D, Cisternas P, Balogh R, Yang JYH, Davidson PL, Wray G. Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 32339242 DOI: 10.1093/Dnares/Dsaa007 |
0.472 |
|
| 2020 |
Wang L, Israel JW, Edgar A, Raff RA, Raff EC, Byrne M, Wray GA. Genetic basis for divergence in developmental gene expression in two closely related sea urchins. Nature Ecology & Evolution. PMID 32284581 DOI: 10.1038/S41559-020-1165-Y |
0.808 |
|
| 2019 |
Muley VY, López-Victorio CJ, Ayala-Sumuano JT, González-Gallardo A, González-Santos L, Lozano-Flores C, Wray G, Hernández M, Varela-Echavarría A. Conserved and divergent expression dynamics during early patterning of the telencephalon in mouse and chick embryos. Progress in Neurobiology. 101735. PMID 31846713 DOI: 10.1016/J.Pneurobio.2019.101735 |
0.466 |
|
| 2019 |
Edgar A, Byrne M, Wray GA. Embryo microinjection of the lecithotrophic sea urchin . Journal of Biological Methods. 6: e119. PMID 31772951 DOI: 10.14440/jbm.2019.292 |
0.355 |
|
| 2019 |
Edsall LE, Berrio A, Majoros WH, Swain-Lenz D, Morrow S, Shibata Y, Safi A, Wray GA, Crawford GE, Allen AS. Evaluating chromatin accessibility differences across multiple primate species using a joint modelling approach. Genome Biology and Evolution. PMID 31599933 DOI: 10.1093/Gbe/Evz218 |
0.8 |
|
| 2019 |
Swain-Lenz D, Berrio A, Safi A, Crawford GE, Wray GA. Comparative analyses of chromatin landscape in white adipose tissue suggest humans may have less beigeing potential than other primates. Genome Biology and Evolution. PMID 31233101 DOI: 10.1093/Gbe/Evz134 |
0.779 |
|
| 2019 |
Davidson PL, Thompson JW, Foster MW, Moseley MA, Byrne M, Wray GA. A comparative analysis of egg provisioning using mass spectrometry during rapid life history evolution in sea urchins. Evolution & Development. PMID 31102332 DOI: 10.1111/Ede.12289 |
0.35 |
|
| 2019 |
Oulhen N, Foster S, Wray G, Wessel G. Identifying gene expression from single cells to single genes. Methods in Cell Biology. 151: 127-158. PMID 30948004 DOI: 10.1016/Bs.Mcb.2018.11.018 |
0.572 |
|
| 2019 |
Wray GA, Haag ES. Rudolf A. Raff (1941-2019). Nature Ecology & Evolution. PMID 30820042 DOI: 10.1038/S41559-019-0844-Z |
0.579 |
|
| 2018 |
Pizzollo J, Nielsen WJ, Shibata Y, Safi A, Crawford GE, Wray GA, Babbitt CC. Comparative Serum Challenges Show Divergent Patterns of Gene Expression and Open Chromatin in Human and Chimpanzee. Genome Biology and Evolution. 10: 826-839. PMID 29608722 DOI: 10.1093/Gbe/Evy041 |
0.473 |
|
| 2018 |
Singh A, Pinto L, Martin C, Rutherford N, Ragunathan A, Upadhyay U, Kapoor P, McRae M, Siddiqui A, Cantelmi D, Heyland A, Wray G, Stone J. Rudiment resorption as a response to starvation during larval development in the sea urchin Strongylocentrotus droebachiensis Canadian Journal of Zoology. 96: 1178-1185. DOI: 10.1139/Cjz-2017-0261 |
0.332 |
|
| 2017 |
Byrne M, Koop D, Morris VB, Chui J, Wray GA, Cisternas P. Expression of genes and proteins of the Pax-Six-Eya-Dach network in the metamorphic sea urchin: insights into development of the enigmatic echinoderm body plan and sensory structures. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 28850769 DOI: 10.1002/Dvdy.24584 |
0.402 |
|
| 2017 |
Linchangco GV, Foltz DW, Reid R, Williams J, Nodzak C, Kerr AM, Miller AK, Hunter R, Wilson NG, Nielsen WJ, Mah CL, Rouse GW, Wray GA, Janies DA. The phylogeny of extant starfish (Asteroidea: Echinodermata) including Xyloplax, based on comparative transcriptomics. Molecular Phylogenetics and Evolution. PMID 28757447 DOI: 10.1016/J.Ympev.2017.07.022 |
0.362 |
|
| 2017 |
Babbitt CC, Haygood R, Nielsen WJ, Wray GA. Gene expression and adaptive noncoding changes during human evolution. Bmc Genomics. 18: 435. PMID 28583075 DOI: 10.1186/S12864-017-3831-2 |
0.47 |
|
| 2017 |
Koop D, Cisternas P, Morris VB, Strbenac D, Yang JY, Wray GA, Byrne M. Nodal and BMP expression during the transition to pentamery in the sea urchin Heliocidaris erythrogramma: insights into patterning the enigmatic echinoderm body plan. Bmc Developmental Biology. 17: 4. PMID 28193178 DOI: 10.1186/S12861-017-0145-1 |
0.342 |
|
| 2017 |
Runcie DE, Dorey N, Garfield DA, Stumpp M, Dupont S, Wray GA. Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biology and Evolution. PMID 28082601 DOI: 10.1093/Gbe/Evw272 |
0.806 |
|
| 2016 |
Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA. Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris. Plos Biology. 14: e1002391. PMID 26943850 DOI: 10.1371/Journal.Pbio.1002391 |
0.808 |
|
| 2016 |
Janies DA, Witter Z, Linchangco GV, Foltz DW, Miller AK, Kerr AM, Jay J, Reid RW, Wray GA. EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms. Bmc Bioinformatics. 17: 48. PMID 26800861 DOI: 10.1186/S12859-016-0883-2 |
0.303 |
|
| 2015 |
Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, ... ... Wray GA, et al. The PsychENCODE project. Nature Neuroscience. 18: 1707-1712. PMID 26605881 DOI: 10.1038/Nn.4156 |
0.37 |
|
| 2015 |
Wray GA. Molecular clocks and the early evolution of metazoan nervous systems. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26554040 DOI: 10.1098/Rstb.2015.0046 |
0.337 |
|
| 2015 |
Bauernfeind AL, Soderblom EJ, Turner ME, Moseley MA, Ely JJ, Hof PR, Sherwood CC, Wray GA, Babbitt CC. Evolutionary divergence of gene and protein expression in the brains of humans and chimpanzees. Genome Biology and Evolution. PMID 26163674 DOI: 10.1093/Gbe/Evv132 |
0.36 |
|
| 2015 |
Byrne M, Koop D, Cisternas P, Strbenac D, Yang JY, Wray GA. Transcriptomic analysis of Nodal- and BMP-associated genes during juvenile development of the sea urchin Heliocidaris erythrogramma. Marine Genomics. PMID 26066611 DOI: 10.1016/J.Margen.2015.05.019 |
0.455 |
|
| 2015 |
Bauernfeind AL, Reyzer ML, Caprioli RM, Ely JJ, Babbitt CC, Wray GA, Hof PR, Sherwood CC. High spatial resolution proteomic comparison of the brain in humans and chimpanzees. The Journal of Comparative Neurology. PMID 25779868 DOI: 10.1002/Cne.23777 |
0.347 |
|
| 2015 |
Boyd JL, Skove SL, Rouanet JP, Pilaz LJ, Bepler T, Gordân R, Wray GA, Silver DL. Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex. Current Biology : Cb. 25: 772-9. PMID 25702574 DOI: 10.1016/J.Cub.2015.01.041 |
0.645 |
|
| 2015 |
Muntané G, Horvath JE, Hof PR, Ely JJ, Hopkins WD, Raghanti MA, Lewandowski AH, Wray GA, Sherwood CC. Analysis of synaptic gene expression in the neocortex of primates reveals evolutionary changes in glutamatergic neurotransmission. Cerebral Cortex (New York, N.Y. : 1991). 25: 1596-607. PMID 24408959 DOI: 10.1093/Cercor/Bht354 |
0.384 |
|
| 2014 |
Horvath JE, Ramachandran GL, Fedrigo O, Nielsen WJ, Babbitt CC, St Clair EM, Pfefferle LW, Jernvall J, Wray GA, Wall CE. Genetic comparisons yield insight into the evolution of enamel thickness during human evolution. Journal of Human Evolution. 73: 75-87. PMID 24810709 DOI: 10.1016/J.Jhevol.2014.01.005 |
0.434 |
|
| 2014 |
Wygoda JA, Yang Y, Byrne M, Wray GA. Transcriptomic analysis of the highly derived radial body plan of a sea urchin. Genome Biology and Evolution. 6: 964-73. PMID 24696402 DOI: 10.1093/Gbe/Evu070 |
0.41 |
|
| 2013 |
Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA. The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. Plos Biology. 11: e1001696. PMID 24204211 DOI: 10.1371/Journal.Pbio.1001696 |
0.825 |
|
| 2013 |
Pfefferle LW, Wray GA. Insights from a chimpanzee adipose stromal cell population: opportunities for adult stem cells to expand primate functional genomics. Genome Biology and Evolution. 5: 1995-2005. PMID 24092797 DOI: 10.1093/Gbe/Evt148 |
0.415 |
|
| 2013 |
Runcie DE, Wiedmann RT, Archie EA, Altmann J, Wray GA, Alberts SC, Tung J. Social environment influences the relationship between genotype and gene expression in wild baboons. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120345. PMID 23569293 DOI: 10.1098/Rstb.2012.0345 |
0.777 |
|
| 2013 |
Wray GA. Genomics and the evolution of phenotypic traits Annual Review of Ecology, Evolution, and Systematics. 44: 51-72. DOI: 10.1146/Annurev-Ecolsys-110512-135828 |
0.408 |
|
| 2012 |
Garfield D, Haygood R, Nielsen WJ, Wray GA. Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus. Evolution & Development. 14: 152-67. PMID 23017024 DOI: 10.1111/J.1525-142X.2012.00532.X |
0.703 |
|
| 2012 |
Runcie DE, Garfield DA, Babbitt CC, Wygoda JA, Mukherjee S, Wray GA. Genetics of gene expression responses to temperature stress in a sea urchin gene network. Molecular Ecology. 21: 4547-62. PMID 22856327 DOI: 10.1111/J.1365-294X.2012.05717.X |
0.82 |
|
| 2012 |
Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE. Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection. Plos Genetics. 8: e1002789. PMID 22761590 DOI: 10.1371/Journal.Pgen.1002789 |
0.727 |
|
| 2012 |
Babbitt CC, Tung J, Wray GA, Alberts SC. Changes in gene expression associated with reproductive maturation in wild female baboons. Genome Biology and Evolution. 4: 102-9. PMID 22155733 DOI: 10.1093/Gbe/Evr134 |
0.759 |
|
| 2012 |
Wray GA. Adaptation and Gene Networks Bioscience. 62: 1084-1085. DOI: 10.1525/Bio.2012.62.12.10 |
0.348 |
|
| 2011 |
Fedrigo O, Pfefferle AD, Babbitt CC, Haygood R, Wall CE, Wray GA. A potential role for glucose transporters in the evolution of human brain size. Brain, Behavior and Evolution. 78: 315-26. PMID 21986508 DOI: 10.1159/000329852 |
0.352 |
|
| 2011 |
Tung J, Akinyi MY, Mutura S, Altmann J, Wray GA, Alberts SC. Allele-specific gene expression in a wild nonhuman primate population. Molecular Ecology. 20: 725-39. PMID 21226779 DOI: 10.1111/J.1365-294X.2010.04970.X |
0.732 |
|
| 2011 |
Babbitt CC, Warner LR, Fedrigo O, Wall CE, Wray GA. Genomic signatures of diet-related shifts during human origins. Proceedings. Biological Sciences / the Royal Society. 278: 961-9. PMID 21177690 DOI: 10.1098/Rspb.2010.2433 |
0.377 |
|
| 2011 |
Yokoyama KD, Thorne JL, Wray GA. Coordinated genome-wide modifications within proximal promoter cis-regulatory elements during vertebrate evolution. Genome Biology and Evolution. 3: 66-74. PMID 21118975 DOI: 10.1093/Gbe/Evq078 |
0.677 |
|
| 2011 |
Szövényi P, Rensing SA, Lang D, Wray GA, Shaw AJ. Generation-biased gene expression in a bryophyte model system. Molecular Biology and Evolution. 28: 803-12. PMID 20855429 DOI: 10.1093/Molbev/Msq254 |
0.437 |
|
| 2010 |
Cruz-Gordillo P, Fedrigo O, Wray GA, Babbitt CC. Extensive changes in the expression of the opioid genes between humans and chimpanzees. Brain, Behavior and Evolution. 76: 154-62. PMID 21079395 DOI: 10.1159/000320968 |
0.456 |
|
| 2010 |
Oliver TA, Garfield DA, Manier MK, Haygood R, Wray GA, Palumbi SR. Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin. Genome Biology and Evolution. 2: 800-14. PMID 20935062 DOI: 10.1093/Gbe/Evq063 |
0.739 |
|
| 2010 |
Fedrigo O, Warner LR, Pfefferle AD, Babbitt CC, Cruz-Gordillo P, Wray GA. A pipeline to determine RT-QPCR control genes for evolutionary studies: application to primate gene expression across multiple tissues. Plos One. 5. PMID 20824057 DOI: 10.1371/Journal.Pone.0012545 |
0.438 |
|
| 2010 |
Tung J, Alberts SC, Wray GA. Evolutionary genetics in wild primates: combining genetic approaches with field studies of natural populations. Trends in Genetics : Tig. 26: 353-62. PMID 20580115 DOI: 10.1016/J.Tig.2010.05.005 |
0.689 |
|
| 2010 |
Haygood R, Babbitt CC, Fedrigo O, Wray GA. Contrasts between adaptive coding and noncoding changes during human evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7853-7. PMID 20385805 DOI: 10.1073/Pnas.0911249107 |
0.445 |
|
| 2010 |
Babbitt CC, Fedrigo O, Pfefferle AD, Boyle AP, Horvath JE, Furey TS, Wray GA. Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brain. Genome Biology and Evolution. 2: 67-79. PMID 20333225 DOI: 10.1093/Gbe/Evq002 |
0.706 |
|
| 2010 |
Fédrigo O, Wray GA. Developmental evolution: how beetles evolved their shields. Current Biology : Cb. 20: R64-6. PMID 20129042 DOI: 10.1016/J.Cub.2009.12.012 |
0.445 |
|
| 2010 |
Babbitt CC, Silverman JS, Haygood R, Reininga JM, Rockman MV, Wray GA. Multiple Functional Variants in cis Modulate PDYN Expression. Molecular Biology and Evolution. 27: 465-79. PMID 19910384 DOI: 10.1093/Molbev/Msp276 |
0.706 |
|
| 2010 |
Fedrigo O, Babbitt CC, Wray GA. Genome-wide analysis of differential gene expression and exon usage in the primate brain F1000research. 1. DOI: 10.7490/F1000Research.355.1 |
0.423 |
|
| 2010 |
Garfield DA, Wray GA. The evolution of gene regulatory interactions Bioscience. 60: 15-23. DOI: 10.1525/Bio.2010.60.1.6 |
0.729 |
|
| 2009 |
Garfield DA, Wray GA. Comparative embryology without a microscope: using genomic approaches to understand the evolution of development. Journal of Biology. 8: 65. PMID 19664180 DOI: 10.1186/Jbiol161 |
0.704 |
|
| 2009 |
Warner LR, Babbitt CC, Primus AE, Severson TF, Haygood R, Wray GA. Functional consequences of genetic variation in primates on tyrosine hydroxylase (TH) expression in vitro. Brain Research. 1288: 1-8. PMID 19591812 DOI: 10.1016/J.Brainres.2009.06.086 |
0.403 |
|
| 2009 |
Tung J, Primus A, Bouley AJ, Severson TF, Alberts SC, Wray GA. Evolution of a malaria resistance gene in wild primates. Nature. 460: 388-91. PMID 19553936 DOI: 10.1038/Nature08149 |
0.739 |
|
| 2009 |
Tung J, Fédrigo O, Haygood R, Mukherjee S, Wray GA. Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation. Molecular Biology and Evolution. 26: 2047-59. PMID 19506001 DOI: 10.1093/Molbev/Msp113 |
0.679 |
|
| 2009 |
Yokoyama KD, Ohler U, Wray GA. Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships. Nucleic Acids Research. 37: e92. PMID 19483094 DOI: 10.1093/Nar/Gkp423 |
0.622 |
|
| 2008 |
Wray GA, Babbitt CC. Genetics. Enhancing gene regulation. Science (New York, N.Y.). 321: 1300-1. PMID 18772422 DOI: 10.1126/Science.1163568 |
0.49 |
|
| 2008 |
Horvath JE, Weisrock DW, Embry SL, Fiorentino I, Balhoff JP, Kappeler P, Wray GA, Willard HF, Yoder AD. Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs. Genome Research. 18: 489-99. PMID 18245770 DOI: 10.1101/Gr.7265208 |
0.676 |
|
| 2008 |
Mitchell-Olds T, Feder M, Wray G. Evolutionary and ecological functional genomics. Heredity. 100: 101-2. PMID 18212796 DOI: 10.1038/Sj.Hdy.6801015 |
0.354 |
|
| 2007 |
Babbitt CC, Haygood R, Wray GA. When two is better than one. Cell. 131: 225-7. PMID 17956721 DOI: 10.1016/J.Cell.2007.10.001 |
0.437 |
|
| 2007 |
Bowsher JH, Wray GA, Abouheif E. Growth and patterning are evolutionarily dissociated in the vestigial wing discs of workers of the red imported fire ant, Solenopsis invicta. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 769-76. PMID 17894383 DOI: 10.1002/Jez.B.21200 |
0.682 |
|
| 2007 |
Haygood R, Fedrigo O, Hanson B, Yokoyama KD, Wray GA. Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. Nature Genetics. 39: 1140-4. PMID 17694055 DOI: 10.1038/Npre.2007.69.1 |
0.678 |
|
| 2007 |
Wray GA. The evolutionary significance of cis-regulatory mutations. Nature Reviews. Genetics. 8: 206-16. PMID 17304246 DOI: 10.1038/Nrg2063 |
0.31 |
|
| 2007 |
Tishkoff SA, Reed FA, Ranciaro A, Voight BF, Babbitt CC, Silverman JS, Powell K, Mortensen HM, Hirbo JB, Osman M, Ibrahim M, Omar SA, Lema G, Nyambo TB, Ghori J, ... ... Wray GA, et al. Convergent adaptation of human lactase persistence in Africa and Europe. Nature Genetics. 39: 31-40. PMID 17159977 DOI: 10.1038/Ng1946 |
0.669 |
|
| 2007 |
Sumrall CD, Wray GA. Ontogeny in the fossil record: Diversification of body plans and the evolution of "aberrant" symmetry in Paleozoic echinoderms Paleobiology. 33: 149-163. DOI: 10.1666/06053.1 |
0.338 |
|
| 2007 |
Wray GA. Developmental Genes and the Evolution of Morphology Palaeobiology Ii. 147-152. DOI: 10.1002/9780470999295ch.31 |
0.358 |
|
| 2006 |
Wray GA. The evolution of embryonic gene expression in sea urchins. Integrative and Comparative Biology. 46: 233-42. PMID 21672738 DOI: 10.1093/Icb/Icj030 |
0.515 |
|
| 2006 |
Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Wray G, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609 |
0.761 |
|
| 2006 |
Loisel DA, Rockman MV, Wray GA, Altmann J, Alberts SC. Ancient polymorphism and functional variation in the primate MHC-DQA1 5' cis-regulatory region. Proceedings of the National Academy of Sciences of the United States of America. 103: 16331-6. PMID 17053068 DOI: 10.1073/Pnas.0607662103 |
0.766 |
|
| 2006 |
Romano LA, Wray GA. Endo16 is required for gastrulation in the sea urchin Lytechinus variegatus. Development, Growth & Differentiation. 48: 487-97. PMID 17026713 DOI: 10.1111/J.1440-169X.2006.00884.X |
0.396 |
|
| 2006 |
Wray GA. Evolution: spot on (and off). Nature. 440: 1001-2. PMID 16625184 DOI: 10.1038/4401001A |
0.394 |
|
| 2005 |
Mooi R, David B, Wray GA. Arrays in rays: terminal addition in echinoderms and its correlation with gene expression. Evolution & Development. 7: 542-55. PMID 16336408 DOI: 10.1111/J.1525-142X.2005.05058.X |
0.41 |
|
| 2005 |
Rockman MV, Hahn MW, Soranzo N, Zimprich F, Goldstein DB, Wray GA. Ancient and recent positive selection transformed opioid cis-regulation in humans. Plos Biology. 3: e387. PMID 16274263 DOI: 10.1371/Journal.Pbio.0030387 |
0.689 |
|
| 2005 |
Balhoff JP, Wray GA. Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites. Proceedings of the National Academy of Sciences of the United States of America. 102: 8591-6. PMID 15937122 DOI: 10.1073/Pnas.0409638102 |
0.687 |
|
| 2004 |
Ettensohn CA, Wessel GM, Wray GA. The invertebrate deuterostomes: an introduction to their phylogeny, reproduction, development, and genomics. Methods in Cell Biology. 74: 1-13. PMID 15575600 DOI: 10.1016/S0091-679X(04)74001-7 |
0.618 |
|
| 2004 |
Rockman MV, Hahn MW, Soranzo N, Loisel DA, Goldstein DB, Wray GA. Positive selection on MMP3 regulation has shaped heart disease risk. Current Biology : Cb. 14: 1531-9. PMID 15341739 DOI: 10.1016/J.Cub.2004.08.051 |
0.688 |
|
| 2004 |
Hahn MW, Rockman MV, Soranzo N, Goldstein DB, Wray GA. Population genetic and phylogenetic evidence for positive selection on regulatory mutations at the factor VII locus in humans. Genetics. 167: 867-77. PMID 15238535 DOI: 10.1534/Genetics.103.025726 |
0.679 |
|
| 2004 |
Bely AE, Wray GA. Molecular phylogeny of naidid worms (Annelida: Clitellata) based on cytochrome oxidase I. Molecular Phylogenetics and Evolution. 30: 50-63. PMID 15022757 DOI: 10.1016/S1055-7903(03)00180-5 |
0.713 |
|
| 2004 |
Levinton J, Dubb L, Wray GA. Simulations of evolutionary radiations and their application to understanding the probability of a Cambrian explosion Journal of Paleontology. 78: 31-38. DOI: 10.1666/0022-3360(2004)078<0031:Soerat>2.0.Co;2 |
0.311 |
|
| 2003 |
Wray GA. Transcriptional regulation and the evolution of development. The International Journal of Developmental Biology. 47: 675-84. PMID 14756343 DOI: 10.1387/Ijdb.14756343 |
0.485 |
|
| 2003 |
Rockman MV, Hahn MW, Soranzo N, Goldstein DB, Wray GA. Positive selection on a human-specific transcription factor binding site regulating IL4 expression. Current Biology : Cb. 13: 2118-23. PMID 14654003 DOI: 10.1016/J.Cub.2003.11.025 |
0.644 |
|
| 2003 |
Romano LA, Wray GA. Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. Development (Cambridge, England). 130: 4187-99. PMID 12874137 DOI: 10.1242/Dev.00611 |
0.464 |
|
| 2003 |
Knott KE, Balser EJ, Jaeckle WB, Wray GA. Identification of asteroid genera with species capable of larval cloning. The Biological Bulletin. 204: 246-55. PMID 12807702 DOI: 10.2307/1543596 |
0.375 |
|
| 2003 |
Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, Romano LA. The evolution of transcriptional regulation in eukaryotes. Molecular Biology and Evolution. 20: 1377-419. PMID 12777501 DOI: 10.1093/Molbev/Msg140 |
0.804 |
|
| 2003 |
Hahn MW, Stajich JE, Wray GA. The effects of selection against spurious transcription factor binding sites. Molecular Biology and Evolution. 20: 901-6. PMID 12716998 DOI: 10.1093/Molbev/Msg096 |
0.336 |
|
| 2002 |
Rockman MV, Wray GA. Abundant raw material for cis-regulatory evolution in humans. Molecular Biology and Evolution. 19: 1991-2004. PMID 12411608 DOI: 10.1093/Oxfordjournals.Molbev.A004023 |
0.727 |
|
| 2002 |
Wray GA. Do convergent developmental mechanisms underlie convergent phenotypes? Brain, Behavior and Evolution. 59: 327-36. PMID 12207087 DOI: 10.1159/000063566 |
0.443 |
|
| 2002 |
Abouheif E, Wray GA. Evolution of the gene network underlying wing polyphenism in ants. Science (New York, N.Y.). 297: 249-52. PMID 12114626 DOI: 10.1126/Science.1071468 |
0.699 |
|
| 2002 |
Hahn MW, Wray GA. The g-value paradox. Evolution & Development. 4: 73-5. PMID 12004964 DOI: 10.1046/J.1525-142X.2002.01069.X |
0.388 |
|
| 2002 |
Lowe CJ, Issel-Tarver L, Wray GA. Gene expression and larval evolution: changing roles of distal-less and orthodenticle in echinoderm larvae. Evolution & Development. 4: 111-23. PMID 12004959 DOI: 10.1046/J.1525-142X.2002.01066.X |
0.689 |
|
| 2002 |
Wray GA, Strathmann RR. Stasis, change, and functional constraint in the evolution of animal body plans, whatever they may be Vie Et Milieu. 52: 189-199. |
0.537 |
|
| 2001 |
Bely AE, Wray GA. Evolution of regeneration and fission in annelids: insights from engrailed- and orthodenticle-class gene expression. Development (Cambridge, England). 128: 2781-91. PMID 11526083 |
0.736 |
|
| 2001 |
Stone JR, Wray GA. Rapid evolution of cis-regulatory sequences via local point mutations. Molecular Biology and Evolution. 18: 1764-70. PMID 11504856 DOI: 10.1093/Oxfordjournals.Molbev.A003964 |
0.42 |
|
| 2001 |
Wray GA. DEVELOPMENT: Resolving the Hox Paradox Science. 292: 2256-2257. DOI: 10.1126/Science.1060305 |
0.37 |
|
| 2000 |
Wray GA, Lowe CJ. Developmental regulatory genes and echinoderm evolution. Systematic Biology. 49: 28-51. PMID 12116481 DOI: 10.1080/10635150050207375 |
0.696 |
|
| 2000 |
Wray GA. Gene expression during echinoderm metamorphosis. Zygote (Cambridge, England). 8: S48-9. PMID 11191307 DOI: 10.1017/S0967199400130230 |
0.411 |
|
| 2000 |
Wray GA. The evolution of embryonic patterning mechanisms in animals. Seminars in Cell & Developmental Biology. 11: 385-93. PMID 11145866 DOI: 10.1006/Scdb.2000.0191 |
0.36 |
|
| 2000 |
Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L. A sea urchin genome project: sequence scan, virtual map, and additional resources. Proceedings of the National Academy of Sciences of the United States of America. 97: 9514-8. PMID 10920195 DOI: 10.1073/Pnas.160261897 |
0.411 |
|
| 2000 |
Lowe CJ, Wray GA. Rearing larvae of sea urchins and sea stars for developmental studies. Methods in Molecular Biology (Clifton, N.J.). 135: 9-15. PMID 10791299 DOI: 10.1385/1-59259-685-1:9 |
0.587 |
|
| 2000 |
Emily K, Wray GA. Controversy and consensus in asteroid systernatics: New insights to ordinal and familial relationships American Zoologist. 40: 382-392. DOI: 10.1668/0003-1569(2000)040[0382:Cacias]2.0.Co;2 |
0.38 |
|
| 2000 |
WRAY GA. Evolutionary Developmental Biology Revisited Bioscience. 50: 713. DOI: 10.1641/0006-3568(2000)050[0713:Edbr]2.0.Co;2 |
0.41 |
|
| 1999 |
Raff RA, Arthur W, Carroll SB, Coates MI, Wray G. Chronicling the birth of a discipline. Evolution & Development. 1: 1-2. PMID 11324014 DOI: 10.1046/J.1525-142X.1999.00110.X |
0.477 |
|
| 1999 |
Wray GA. Evolutionary dissociations between homologous genes and homologous structures. Novartis Foundation Symposium. 222: 189-203; discussion . PMID 10332761 DOI: 10.1002/9780470515655.Ch13 |
0.468 |
|
| 1999 |
Wray GA. The grand scheme of life Trends in Genetics. 15: 84. DOI: 10.1016/S0168-9525(98)01611-4 |
0.361 |
|
| 1998 |
Wray GA, Abouheif E. When is homology not homology? Current Opinion in Genetics & Development. 8: 675-80. PMID 9914205 DOI: 10.1016/S0959-437X(98)80036-1 |
0.74 |
|
| 1998 |
Passini MA, Kurtzman AL, Canger AK, Asch WS, Wray GA, Raymond PA, Schechter N. Cloning of zebrafish vsx1: expression of a paired-like homeobox gene during CNS development. Developmental Genetics. 23: 128-41. PMID 9770270 DOI: 10.1002/(Sici)1520-6408(1998)23:2<128::Aid-Dvg5>3.0.Co;2-8 |
0.382 |
|
| 1998 |
Wray GA, Gerhart J, Kirschner M. A Touch Cell Evolution. 52: 291. DOI: 10.2307/2410949 |
0.615 |
|
| 1998 |
Lowe CJ, Wray GA. Erratum: Radical alterations in the roles of homeobox genes during echinoderm evolution Nature. 392: 105-105. DOI: 10.1038/32217 |
0.617 |
|
| 1997 |
Abouheif E, Akam M, Dickinson WJ, Holland PW, Meyer A, Patel NH, Raff RA, Roth VL, Wray GA. Homology and developmental genes. Trends in Genetics : Tig. 13: 432-3. PMID 9385839 DOI: 10.1016/S0168-9525(97)01271-7 |
0.811 |
|
| 1997 |
Lowe CJ, Wray GA. Radical alterations in the roles of homeobox genes during echinoderm evolution. Nature. 389: 718-21. PMID 9338781 DOI: 10.1038/39580 |
0.701 |
|
| 1997 |
Panganiban G, Irvine SM, Lowe C, Roehl H, Corley LS, Sherbon B, Grenier JK, Fallon JF, Kimble J, Walker M, Wray GA, Swalla BJ, Martindale MQ, Carroll SB. The origin and evolution of animal appendages. Proceedings of the National Academy of Sciences of the United States of America. 94: 5162-6. PMID 9144208 DOI: 10.1073/Pnas.94.10.5162 |
0.687 |
|
| 1997 |
Craig SF, Slobodkin LB, Wray GA, Biermann CH. The 'paradox' of polyembryony: A review of the cases and a hypothesis for its evolution Evolutionary Ecology. 11: 127-143. DOI: 10.1023/A:1018443714917 |
0.309 |
|
| 1996 |
Wray GA, Levinton JS, Shapiro LH. Molecular evidence for deep Precambrian divergences among metazoan phyla Science. 274: 568-581. DOI: 10.1126/Science.274.5287.568 |
0.341 |
|
| 1996 |
Wray GA. Parallel evolution of nonfeeding larvae in echinoids Systematic Biology. 45: 308-322. DOI: 10.1093/Sysbio/45.3.308 |
0.357 |
|
| 1995 |
Wray GA. Punctuated evolution of embryos. Science (New York, N.Y.). 267: 1115-6. PMID 17789192 DOI: 10.1126/Science.267.5201.1115 |
0.316 |
|
| 1995 |
Smith AB, Littlewood DTJ, Wray GA. Comparing patterns of evolution: larval and adult life history stages and ribosomal RNA of post-Palaeozoic echinoids Philosophical Transactions - Royal Society of London, B. 349: 11-18. DOI: 10.1098/Rstb.1995.0085 |
0.387 |
|
| 1994 |
Wray GA. Developmental evolution: new paradigms and paradoxes. Developmental Genetics. 15: 1-6. PMID 7910538 DOI: 10.1002/Dvg.1020150102 |
0.311 |
|
| 1994 |
Wray GA, Bely AE. The evolution of echinoderm development is driven by several distinct factors. Development (Cambridge, England). Supplement. 97-106. PMID 7579528 |
0.729 |
|
| 1994 |
Wray GA. The evolution of cell lineage in echinoderms Integrative and Comparative Biology. 34: 353-363. DOI: 10.1093/Icb/34.3.353 |
0.37 |
|
| 1992 |
Wray GA. Rates of evolution in developmental processes Integrative and Comparative Biology. 32: 123-134. DOI: 10.1093/Icb/32.1.123 |
0.336 |
|
| 1992 |
Wray GA. The evolution of larval morphology during the post-Paleozoic radiation of echinoids Paleobiology. 18: 258-287. DOI: 10.1017/S0094837300010848 |
0.332 |
|
| 1991 |
Wray GA, Raff RA. RAPID EVOLUTION OF GASTRULATION MECHANISMS IN A SEA URCHIN WITH LECITHOTROPHIC LARVAE. Evolution; International Journal of Organic Evolution. 45: 1741-1750. PMID 28563964 DOI: 10.1111/J.1558-5646.1991.Tb02684.X |
0.59 |
|
| 1991 |
Wray GA, Raff RA. The evolution of developmental strategy in marine invertebrates. Trends in Ecology & Evolution. 6: 45-50. PMID 21232422 DOI: 10.1016/0169-5347(91)90121-D |
0.577 |
|
| 1991 |
Hernry JJ, Wray GA, Raff RA. Mechanism of an alternate type of echinoderm blastula formation: The wrinkled blastula of the sea urchin Heliocidaris erythrogramma Development Growth and Differentiation. 33: 317-328. DOI: 10.1111/J.1440-169X.1991.00317.X |
0.574 |
|
| 1990 |
Wray GA, Raff RA. Novel origins of lineage founder cells in the direct-developing sea urchin Heliocidaris erythrogramma. Developmental Biology. 141: 41-54. PMID 2391005 DOI: 10.1016/0012-1606(90)90100-W |
0.614 |
|
| 1990 |
Scott LB, Lennarz WJ, Raff RA, Wray GA. The "lecithotrophic" sea urchin Heliocidaris erythrogramma lacks typical yolk platelets and yolk glycoproteins. Developmental Biology. 138: 188-93. PMID 2307284 DOI: 10.1016/0012-1606(90)90188-O |
0.52 |
|
| 1990 |
Henry JJ, Wray GA, Raff RA. The dorsoventral axis is specified prior to first cleavage in the direct developing sea urchin Heliocidaris erythrogramma. Development (Cambridge, England). 110: 875-84. PMID 2088726 |
0.622 |
|
| 1990 |
Nijhout HF, Wray GA, Gilbert LE. An analysis of the phenotypic effects of certain colour pattern genes in Heliconius (Lepidoptera: Nymphalidae) Biological Journal of the Linnean Society. 40: 357-372. DOI: 10.1111/J.1095-8312.1990.Tb00545.X |
0.363 |
|
| 1990 |
Raff RA, Parr BA, Parks AL, Wray GA. Heterochrony and other mechanisms of radical evolutionary change in early development Evolutionary Innovations. 71-98. |
0.508 |
|
| 1989 |
Wray GA, McClay DR. MOLECULAR HETEROCHRONIES AND HETEROTOPIES IN EARLY ECHINOID DEVELOPMENT. Evolution; International Journal of Organic Evolution. 43: 803-813. PMID 28564201 DOI: 10.1111/J.1558-5646.1989.Tb05178.X |
0.724 |
|
| 1989 |
Wray GA, Raff RA. Evolutionary modification of cell lineage in the direct-developing sea urchin Heliocidaris erythrogramma. Developmental Biology. 132: 458-70. PMID 2924998 DOI: 10.1016/0012-1606(89)90242-X |
0.586 |
|
| 1989 |
Henry JJ, Amemiya S, Wray GA, Raff RA. Early inductive interactions are involved in restricting cell fates of mesomeres in sea urchin embryos. Developmental Biology. 136: 140-53. PMID 2806717 DOI: 10.1016/0012-1606(89)90137-1 |
0.672 |
|
| 1989 |
PARKS AL, BISGROVE BW, WRAY GA, RAFF RA. Direct Development in the Sea UrchinPhyllacanthus parvispinus(Cidaroidea): Phylogenetic History and Functional Modification The Biological Bulletin. 177: 96-109. DOI: 10.2307/1541838 |
0.576 |
|
| 1989 |
Raff RA, Wray GA. Heterochrony: developmental mechanisms and evolutionary results Journal of Evolutionary Biology. 2: 409-434. DOI: 10.1046/J.1420-9101.1989.2060409.X |
0.594 |
|
| 1988 |
Wray GA, McClay DR. The origin of spicule-forming cells in a 'primitive' sea urchin (Eucidaris tribuloides) which appears to lack primary mesenchyme cells. Development (Cambridge, England). 103: 305-15. PMID 3066611 |
0.671 |
|
| 1988 |
Nijhout HF, Wray GA. Homologies in the colour patterns of the genus Heliconius (Lepidoptera: Nymphalidae) Biological Journal of the Linnean Society. 33: 345-365. DOI: 10.1111/J.1095-8312.1988.Tb00449.X |
0.306 |
|
| 1986 |
Frederik Nijhout H, Wray GA, Kremen C, Teragawa CK. Ontogeny, phylogeny and evolution of form: An algorithmic approach Systematic Zoology. 35: 445-457. DOI: 10.2307/2413108 |
0.447 |
|
| 1986 |
Nijhout HF, Wray GA. Homologies in the colour patterns of the genus Charaxes (Lepidoptera: Nymphalidae) Biological Journal of the Linnean Society. 28: 387-410. DOI: 10.1111/J.1095-8312.1986.Tb01766.X |
0.301 |
|
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