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Akinyemi I. Ojesina, Ph.D. - Publications

Affiliations: 
2007 Harvard University, Cambridge, MA, United States 
Area:
Microbiology Biology, Virology Biology, Molecular Biology, Public Health, Epidemiology
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Gagliardi A, Porter VL, Zong Z, Bowlby R, Titmuss E, Namirembe C, Griner NB, Petrello H, Bowen J, Chan SK, Culibrk L, Darragh TM, Stoler MH, Wright TC, Gesuwan P, ... ... Ojesina AI, et al. Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. Nature Genetics. 52: 800-810. PMID 32747824 DOI: 10.1038/S41588-020-0673-7  0.328
2020 Gagliardi A, Porter VL, Zong Z, Bowlby R, Titmuss E, Namirembe C, Griner NB, Petrello H, Bowen J, Chan SK, Culibrk L, Darragh TM, Stoler MH, Wright TC, Gesuwan P, ... ... Ojesina AI, et al. Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. Nature Genetics. 52: 800-810. PMID 32747824 DOI: 10.1038/S41588-020-0673-7  0.328
2019 Behring M, Vazquez AI, Cui X, Irvin MR, Ojesina AI, Agarwal S, Manne U, Shrestha S. Gain of function in somatic TP53 mutations is associated with immune-rich breast tumors and changes in tumor-associated macrophages. Molecular Genetics & Genomic Medicine. e1001. PMID 31637877 DOI: 10.1002/Mgg3.1001  0.32
2019 Zhang J, Brooke DJ, Blair JP, Riby J, Ojesina AI. Abstract 4350:MAPK1E322Ksomatic mutation promotes cell proliferation via positive feedback regulation of EGFR/RAF signaling Cancer Research. 79: 4350-4350. DOI: 10.1158/1538-7445.Am2019-4350  0.327
2018 Walker MA, Pedamallu CS, Ojesina AI, Bullman S, Sharpe T, Whelan CW, Meyerson M. GATK PathSeq: A customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts. Bioinformatics (Oxford, England). PMID 29982281 DOI: 10.1093/Bioinformatics/Bty501  0.323
2018 Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, ... ... Ojesina AI, et al. The Immune Landscape of Cancer. Immunity. PMID 29628290 DOI: 10.1016/J.Immuni.2018.03.023  0.331
2018 Liu Y, Sethi NS, Hinoue T, Schneider BG, Cherniack AD, Sanchez-Vega F, Seoane JA, Farshidfar F, Bowlby R, Islam M, Kim J, Chatila W, Akbani R, Kanchi RS, Rabkin CS, ... ... Ojesina AI, et al. Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas. Cancer Cell. PMID 29622466 DOI: 10.1016/J.Ccell.2018.03.010  0.371
2018 Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, ... ... Ojesina AI, et al. A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell. PMID 29622464 DOI: 10.1016/J.Ccell.2018.03.014  0.36
2018 Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, ... ... Ojesina AI, et al. Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Reports. 23: 194-212.e6. PMID 29617660 DOI: 10.1016/J.Celrep.2018.03.063  0.35
2017 Robertson AG, Kim J, Al-Ahmadie H, Bellmunt J, Guo G, Cherniack AD, Hinoue T, Laird PW, Hoadley KA, Akbani R, Castro MAA, Gibb EA, Kanchi RS, Gordenin DA, Shukla SA, ... ... Ojesina AI, et al. Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer. Cell. PMID 28988769 DOI: 10.1016/J.Cell.2017.09.007  0.339
2017 Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, ... ... Ojesina AI, et al. Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles. Cell Reports. 19: 2878-2880. PMID 28658632 DOI: 10.1016/J.Celrep.2017.06.008  0.301
2017 Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, ... ... Ojesina AI, et al. Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles. Cell Reports. 18: 2780-2794. PMID 28297679 DOI: 10.1016/J.Celrep.2017.02.033  0.353
2016 Weaver AN, Burch MB, Cooper TS, Della Manna DL, Wei S, Ojesina AI, Rosenthal EL, Yang ES. Notch Signaling Activation is Associated with Patient Mortality and Increased FGF1-mediated Invasion in Squamous Cell Carcinoma of the Oral Cavity. Molecular Cancer Research : McR. PMID 27353029 DOI: 10.1158/1541-7786.Mcr-16-0114  0.302
2016 Pedamallu CS, Meyerson M, Ojesina A. Abstract 3301: Breast cancer subtypes have distinct microbial and immune cytolytic transcriptomic signatures Cancer Research. 76: 3301-3301. DOI: 10.1158/1538-7445.Am2016-3301  0.356
2015 Arvey A, Ojesina AI, Pedamallu CS, Ballon G, Jung J, Duke F, Leoncini L, De Falco G, Bressman E, Tam W, Chadburn A, Meyerson M, Cesarman E. The tumor virus landscape of AIDS-related lymphomas. Blood. 125: e14-22. PMID 25827832 DOI: 10.1182/Blood-2014-11-599951  0.351
2015 Chung TK, Van Hummelen P, Chan PK, Cheung TH, Yim SF, Yu MY, Ducar MD, Thorner AR, MacConaill LE, Doran G, Pedamallu CS, Ojesina AI, Wong RR, Wang VW, Freeman SS, et al. Genomic aberrations in cervical adenocarcinomas in Hong Kong Chinese women. International Journal of Cancer. Journal International Du Cancer. 137: 776-83. PMID 25626421 DOI: 10.1002/Ijc.29456  0.357
2014 Parfenov M, Pedamallu CS, Gehlenborg N, Freeman SS, Danilova L, Bristow CA, Lee S, Hadjipanayis AG, Ivanova EV, Wilkerson MD, Protopopov A, Yang L, Seth S, Song X, Tang J, ... ... Ojesina AI, et al. Characterization of HPV and host genome interactions in primary head and neck cancers. Proceedings of the National Academy of Sciences of the United States of America. 111: 15544-9. PMID 25313082 DOI: 10.1073/Pnas.1416074111  0.341
2014 Ojesina AI, Lichtenstein L, Freeman SS, Pedamallu CS, Imaz-Rosshandler I, Pugh TJ, Cherniack AD, Ambrogio L, Cibulskis K, Bertelsen B, Romero-Cordoba S, Treviño V, Vazquez-Santillan K, Guadarrama AS, Wright AA, et al. Landscape of genomic alterations in cervical carcinomas. Nature. 506: 371-5. PMID 24390348 DOI: 10.1038/Nature12881  0.399
2014 Ojesina AI, Murray B, Bjorge L, Woie K, Krakstad C, Lichtenstein L, Pedamallu CS, Taylor-Weiner A, Freeman SS, Cherniack AD, Lawrence MS, Cibulskis K, Carter SL, Walline H, Carey TE, et al. Abstract 4692: Relationships between somatic genomic alterations, tumor stage and progression-free survival in cervical cancer Cancer Research. 74: 4692-4692. DOI: 10.1158/1538-7445.Am2014-4692  0.386
2013 Francis JM, Kiezun A, Ramos AH, Serra S, Pedamallu CS, Qian ZR, Banck MS, Kanwar R, Kulkarni AA, Karpathakis A, Manzo V, Contractor T, Philips J, Nickerson E, Pho N, ... ... Ojesina AI, et al. Somatic mutation of CDKN1B in small intestine neuroendocrine tumors. Nature Genetics. 45: 1483-6. PMID 24185511 DOI: 10.1038/Ng.2821  0.328
2013 Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Michaud M, Walker BJ, Young S, Earl AM, Kostic AD, Ojesina AI, Hasserjian R, Ballen KK, et al. Sequence-based discovery of Bradyrhizobium enterica in cord colitis syndrome. The New England Journal of Medicine. 369: 517-28. PMID 23924002 DOI: 10.1056/Nejmoa1211115  0.347
2013 Ojesina AI, Pedamallu CS, Kostic A, Jung J, Auclair D, Lohr J, Carpten J, Getz G, Keats JJ, Meyerson M. High Throughput Sequencing-Based Pathogen Discovery In Multiple Myeloma Blood. 122: 5322-5322. DOI: 10.1182/Blood.V122.21.5322.5322  0.393
2013 Ojesina AI, Lichtenstein L, Ambrogio L, Cibulskis K, Freeman S, Pedamallu CS, Bertelsen B, Imaz I, Vazquez K, Guadarrama AS, Treviño V, Romero-Cordoba S, Duke F, Kaplan B, Rodriguez I, et al. Abstract 4604: Landscape of human and viral genomic alterations in cervical carcinomas. Cancer Research. 73: 4604-4604. DOI: 10.1158/1538-7445.Am2013-4604  0.417
2013 Jung J, Pedamallu CS, Kostic AD, Freeman S, Ojesina AI, Berger A, Bhatt A, Duke F, Getz G, Meyerson M. Abstract 1501: Pan-cancer PathSeq analysis on TCGA data for pathogen discovery. Cancer Research. 73: 1501-1501. DOI: 10.1158/1538-7445.Am2013-1501  0.379
2012 Lohr JG, Stojanov P, Lawrence MS, Auclair D, Chapuy B, Sougnez C, Cruz-Gordillo P, Knoechel B, Asmann YW, Slager SL, Novak AJ, Dogan A, Ansell SM, Link BK, Zou L, ... ... Ojesina AI, et al. Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 109: 3879-84. PMID 22343534 DOI: 10.1073/Pnas.1121343109  0.38
2012 Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F, Earl AM, Ojesina AI, Jung J, Bass AJ, Tabernero J, Baselga J, Liu C, Shivdasani RA, Ogino S, Birren BW, et al. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Research. 22: 292-8. PMID 22009990 DOI: 10.1101/Gr.126573.111  0.348
2012 Ojesina AI, Jung J, Barouk S, Cesarman E, Meyerson M. Pathogen discovery in AIDS-related lymphoma by high-throughput sequencing Infectious Agents and Cancer. 7: P45. DOI: 10.1186/1750-9378-7-S1-P45  0.344
2012 Bhatt AS, Freeman SS, Herrera AF, Pedamallu CS, Gevers D, Duke F, Jung J, Walker BJ, Young S, Earl A, Kostic A, Ojesina AI, Soriano G, Antin JH, Soiffer RJ, et al. Next-Generation Sequencing for the Identification of Transplantation-Associated Pathogens Blood. 120: LBA-4-LBA-4. DOI: 10.1182/Blood.V120.21.Lba-4.Lba-4  0.336
2011 Kostic AD, Ojesina AI, Pedamallu CS, Jung J, Verhaak RG, Getz G, Meyerson M. PathSeq: software to identify or discover microbes by deep sequencing of human tissue. Nature Biotechnology. 29: 393-6. PMID 21552235 DOI: 10.1038/Nbt.1868  0.32
2011 Ojesina AI, Kostic A, Pedamallu CS, Jung J, Duke F, Getz G, Meyerson M. Abstract 949: PathSeq: A comprehensive computational tool for pathogen discovery by deep sequencing of human cancer tissues Cancer Research. 71: 949-949. DOI: 10.1158/1538-7445.Am2011-949  0.365
2008 Ojesina AI, Chaplin B, Sankalé JL, Murphy R, Idigbe E, Adewole I, Ekong E, Idoko J, Kanki PJ. Interplay of reverse transcriptase inhibitor therapy and gag p6 diversity in HIV type 1 subtype G and CRF02_AG. Aids Research and Human Retroviruses. 24: 1167-74. PMID 18729771 DOI: 10.1089/Aid.2007.0308  0.599
2007 Ojesina AI, Mullins C, Imade G, Samuels J, Sankalé JL, Pam S, Sagay S, Idoko J, Kanki PJ. Characterization of HIV type 1 reverse transcriptase mutations in infants infected by mothers who received peripartum nevirapine prophylaxis in Jos, Nigeria. Aids Research and Human Retroviruses. 23: 1587-92. PMID 18160018 DOI: 10.1089/Aid.2007.0064  0.58
2007 Sankalé JL, Langevin S, Odaibo G, Meloni ST, Ojesina AI, Olaleye D, Kanki P. The complexity of circulating HIV type 1 strains in Oyo state, Nigeria. Aids Research and Human Retroviruses. 23: 1020-5. PMID 17725419 DOI: 10.1089/Aid.2006.0304  0.662
2006 Ojesina AI, Kanki PJ. HIV-1 subtype and reverse transcriptase genotype: role for geographical location and founder effects. Plos Medicine. 3: e540. PMID 17194205 DOI: 10.1371/Journal.Pmed.0030540  0.573
2006 Ojesina AI, Sankalé JL, Odaibo G, Langevin S, Meloni ST, Sarr AD, Olaleye D, Kanki PJ. Subtype-specific patterns in HIV Type 1 reverse transcriptase and protease in Oyo State, Nigeria: implications for drug resistance and host response. Aids Research and Human Retroviruses. 22: 770-9. PMID 16910833 DOI: 10.1089/Aid.2006.22.770  0.678
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