Karthik Devarajan, Ph.D. - Publications

2000 Northern Illinois University, DeKalb, IL, United States 
Statistics, Mathematics, Biostatistics Biology

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Chang WL, Jackson C, Riel S, Cooper HS, Devarajan K, Hensley HH, Zhou Y, Vanderveer LA, Nguyen MT, Clapper ML. Differential preventive activity of sulindac and atorvastatin in Apc(+/Min-FCCC)mice with or without colorectal adenomas. Gut. PMID 29122850 DOI: 10.1136/gutjnl-2017-313942  0.56
2017 Jiang Z, Slater CM, Zhou Y, Devarajan K, Ruth KJ, Li Y, Cai KQ, Daly M, Chen X. LincIN, a novel NF90-binding long non-coding RNA, is overexpressed in advanced breast tumors and involved in metastasis. Breast Cancer Research : Bcr. 19: 62. PMID 28558830 DOI: 10.1186/s13058-017-0853-2  0.56
2016 Zook P, Pathak HB, Belinsky M, Gersz L, Devarajan K, Zhou Y, Godwin AK, von Mehren M, Rink LA. Combination of Imatinib Mesylate and AKT Inhibitor Provides Synergistic Effects in Preclinical Study of Gastrointestinal Stromal Tumor. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 27370604 DOI: 10.1158/1078-0432.CCR-16-0529  0.56
2016 Duong-Ly KC, Devarajan K, Liang S, Horiuchi KY, Wang Y, Ma H, Peterson JR. Kinase Inhibitor Profiling Reveals Unexpected Opportunities to Inhibit Disease-Associated Mutant Kinases. Cell Reports. PMID 26776524 DOI: 10.1016/j.celrep.2015.12.080  1
2015 Devarajan K, Ebrahimi N, Soofi E. A Hybrid Algorithm for Non-negative Matrix Factorization Based on Symmetric Information Divergence. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2015: 1658-1664. PMID 28868206 DOI: 10.1109/BIBM.2015.7359924  1
2015 Cheung VC, Devarajan K, Severini G, Turolla A, Bonato P. Decomposing time series data by a non-negative matrix factorization algorithm with temporally constrained coefficients. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2015: 3496-9. PMID 26737046 DOI: 10.1109/EMBC.2015.7319146  1
2015 Wang M, Devarajan K, Singal AG, Marrero JA, Dai J, Feng Z, Rinaudo JA, Srivastava S, Evans A, Hann HW, Lai Y, Yang H, Block T, Mehta AS. The Doylestown algorithm - a test to improve the performance of AFP in the detection of hepatocellular carcinoma. Cancer Prevention Research (Philadelphia, Pa.). PMID 26712941 DOI: 10.1158/1940-6207.CAPR-15-0186  1
2015 Tricarico R, Cortellino S, Riccio A, Jagmohan-Changur S, Van der Klift H, Wijnen J, Turner D, Ventura A, Rovella V, Percesepe A, Lucci-Cordisco E, Radice P, Bertario L, Pedroni M, Ponz de Leon M, ... ... Devarajan K, et al. Involvement of MBD4 inactivation in mismatch repair-deficient tumorigenesis. Oncotarget. PMID 26503472 DOI: 10.18632/oncotarget.5740  1
2015 Murphy CT, Devarajan K, Wang LS, Mehra R, Ridge JA, Fundakowski C, Galloway TJ. Pre-treatment tumor-specific growth rate as a temporal biomarker that predicts treatment failure and improves risk stratification for oropharyngeal cancer. Oral Oncology. PMID 26410020 DOI: 10.1016/j.oraloncology.2015.09.001  1
2015 Zibelman M, Wong YN, Devarajan K, Malizzia L, Corrigan A, Olszanski AJ, Denlinger CS, Roethke SK, Tetzlaff CH, Plimack ER. Phase I study of the mTOR inhibitor ridaforolimus and the HDAC inhibitor vorinostat in advanced renal cell carcinoma and other solid tumors. Investigational New Drugs. 33: 1040-7. PMID 26091915 DOI: 10.1007/s10637-015-0261-3  1
2015 Devarajan K, Wang G, Ebrahimi N. A unified statistical approach to non-negative matrix factorization and probabilistic latent semantic indexing. Machine Learning. 99: 137-163. PMID 25821345 DOI: 10.1007/s10994-014-5470-z  1
2015 Chen KT, Devarajan K, Hoffman JP. Morbidity among long-term survivors after pancreatoduodenectomy for pancreatic adenocarcinoma. Annals of Surgical Oncology. 22: 1185-9. PMID 25384699 DOI: 10.1245/s10434-014-3969-y  1
2015 Fink LS, Beatty A, Devarajan K, Peri S, Peterson JR. Pharmacological profiling of kinase dependency in cell lines across triple-negative breast cancer subtypes. Molecular Cancer Therapeutics. 14: 298-306. PMID 25344583 DOI: 10.1158/1535-7163.MCT-14-0529  1
2015 Devarajan K, Ebrahimi N, Soofi E. A hybrid algorithm for non-negative matrix factorization based on symmetric information divergence Proceedings - 2015 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2015. 1658-1664. DOI: 10.1109/BIBM.2015.7359924  1
2015 Vijayvergia N, Dotan E, Devarajan K, Hatahet K, Rahman F, Ricco J, Lewis B, Gupta S, Cohen SJ. Patterns of care and outcomes of older versus younger patients with metastatic pancreatic cancer: A Fox Chase Cancer Center experience Journal of Geriatric Oncology. DOI: 10.1016/j.jgo.2015.08.001  1
2014 Dotan E, Devarajan K, D'Silva AJ, Beck A, Kloth DD, Cohen SJ, Denlinger C. Patterns of use and tolerance of anti-epidermal growth factor receptor antibodies in older adults with metastatic colorectal cancer. Clinical Colorectal Cancer. 13: 192-8. PMID 25074246 DOI: 10.1016/j.clcc.2014.05.003  1
2014 Pape-Zambito D, Jiang Z, Wu H, Devarajan K, Slater CM, Cai KQ, Patchefsky A, Daly MB, Chen X. Identifying a highly-aggressive DCIS subgroup by studying intra-individual DCIS heterogeneity among invasive breast cancer patients. Plos One. 9: e100488. PMID 24978026 DOI: 10.1371/journal.pone.0100488  1
2014 Toto JM, Chang EI, Agag R, Devarajan K, Patel SA, Topham NS. Improved operative efficiency of free fibula flap mandible reconstruction with patient-specific, computer-guided preoperative planning. Head & Neck. PMID 24954814 DOI: 10.1002/hed.23815  1
2014 Freedman GM, Fowble BL, Li T, Hwang ES, Schechter N, Devarajan K, Anderson PR, Sigurdson ER, Goldstein LJ, Bleicher RJ. Risk of positive nonsentinel nodes in women with 1-2 positive sentinel nodes related to age and molecular subtype approximated by receptor status. The Breast Journal. 20: 358-63. PMID 24861613 DOI: 10.1111/tbj.12276  1
2014 Hensley H, Devarajan K, Johnson JR, Piwnica-Worms D, Godwin AK, von Mehren M, Rink L. Evaluating new therapies in gastrointestinal stromal tumor using in vivo molecular optical imaging. Cancer Biology & Therapy. 15: 911-8. PMID 24755645 DOI: 10.4161/cbt.28880  1
2014 Devarajan K, Cheung VC. On nonnegative matrix factorization algorithms for signal-dependent noise with application to electromyography data. Neural Computation. 26: 1128-68. PMID 24684448 DOI: 10.1162/NECO_a_00576  1
2014 Dames DN, Blackman E, Butler R, Taioli E, Eckstein S, Devarajan K, Griffith-Bowe A, Gomez P, Ragin C. High-risk cervical human papillomavirus infections among human immunodeficiency virus-positive women in the Bahamas. Plos One. 9: e85429. PMID 24465558 DOI: 10.1371/journal.pone.0085429  1
2014 Gowrishankar B, Ibragimova I, Zhou Y, Slifker MJ, Devarajan K, Al-Saleem T, Uzzo RG, Cairns P. MicroRNA expression signatures of stage, grade, and progression in clear cell RCC. Cancer Biology & Therapy. 15: 329-41. PMID 24351440 DOI: 10.4161/cbt.27314  1
2014 Chen KT, Kim PD, Jones KA, Devarajan K, Patel BB, Hoffman JP, Ehya H, Huang M, Watson JC, Tokar JL, Yeung AT. Potential prognostic biomarkers of pancreatic cancer. Pancreas. 43: 22-7. PMID 24326364 DOI: 10.1097/MPA.0b013e3182a6867e  1
2014 Chen KT, Devarajan K, Milestone BN, Cooper HS, Denlinger C, Cohen SJ, Meyer JE, Hoffman JP. Neoadjuvant chemoradiation and duration of chemotherapy before surgical resection for pancreatic cancer: does time interval between radiotherapy and surgery matter? Annals of Surgical Oncology. 21: 662-9. PMID 24276638 DOI: 10.1245/s10434-013-3396-5  1
2014 Patel SA, Sandberg LJ, Ranganath B, Devarajan K, Toto J, Topham NS. Impact of adjuvant chemotherapy on abdominal wall hernias and bulges after muscle-sparing free TRAM flaps for breast reconstruction. Annals of Plastic Surgery. 73: 62-7. PMID 23241806 DOI: 10.1097/SAP.0b013e31826c42a9  1
2013 Devarajan K, Ebrahimi N. On penalized likelihood estimation for a non-proportional hazards regression model. Statistics & Probability Letters. 83: 1703-1710. PMID 24791034 DOI: 10.1016/j.spl.2013.03.007  1
2013 Wang M, Mehta A, Block TM, Marrero J, Di Bisceglie AM, Devarajan K. A comparison of statistical methods for the detection of hepatocellular carcinoma based on serum biomarkers and clinical variables. Bmc Medical Genomics. 6: S9. PMID 24564861 DOI: 10.1186/1755-8794-6-S3-S9  1
2013 Peri S, Devarajan K, Yang DH, Knudson AG, Balachandran S. Meta-analysis identifies NF-κB as a therapeutic target in renal cancer. Plos One. 8: e76746. PMID 24116146 DOI: 10.1371/journal.pone.0076746  1
2013 Anastassiadis T, Duong-Ly KC, Deacon SW, Lafontant A, Ma H, Devarajan K, Dunbrack RL, Wu J, Peterson JR. A highly selective dual insulin receptor (IR)/insulin-like growth factor 1 receptor (IGF-1R) inhibitor derived from an extracellular signal-regulated kinase (ERK) inhibitor. The Journal of Biological Chemistry. 288: 28068-77. PMID 23935097 DOI: 10.1074/jbc.M113.505032  1
2013 Comunale MA, Wang M, Anbarasan N, Betesh L, Karabudak A, Moritz E, Devarajan K, Marrero J, Block TM, Mehta A. Total serum glycan analysis is superior to lectin-FLISA for the early detection of hepatocellular carcinoma. Proteomics. Clinical Applications. 7: 690-700. PMID 23857719 DOI: 10.1002/prca.201200125  1
2013 Fernandez SV, Robertson FM, Pei J, Aburto-Chumpitaz L, Mu Z, Chu K, Alpaugh RK, Huang Y, Cao Y, Ye Z, Cai KQ, Boley KM, Klein-Szanto AJ, Devarajan K, Addya S, et al. Inflammatory breast cancer (IBC): clues for targeted therapies. Breast Cancer Research and Treatment. 140: 23-33. PMID 23784380 DOI: 10.1007/s10549-013-2600-4  1
2013 Sterious S, Simhan J, Uzzo RG, Gershman B, Li T, Devarajan K, Canter D, Walton J, Fogg R, Ginzburg S, Corcoran A, Smaldone MC, Kutikov A. Familiarity and self-reported compliance with American Urological Association best practice recommendations for use of thromboembolic prophylaxis among American Urological Association members. The Journal of Urology. 190: 992-8. PMID 23538239 DOI: 10.1016/j.juro.2013.03.076  1
2013 Weinberg DS, Keenan E, Ruth K, Devarajan K, Rodoletz M, Bieber EJ. A randomized comparison of print and web communication on colorectal cancer screening. Jama Internal Medicine. 173: 122-9. PMID 23128366 DOI: 10.1001/2013.jamainternmed.1017  1
2013 Miller SM, Hudson SV, Egleston BL, Manne S, Buzaglo JS, Devarajan K, Fleisher L, Millard J, Solarino N, Trinastic J, Meropol NJ. The relationships among knowledge, self-efficacy, preparedness, decisional conflict, and decisions to participate in a cancer clinical trial Psycho-Oncology. 22: 481-489. PMID 22331643 DOI: 10.1002/pon.3043  1
2012 Wang M, Block TM, Marrero J, Di Bisceglie AM, Devarajan K, Mehta A. Improved biomarker performance for the detection of hepatocellular carcinoma by inclusion of clinical parameters. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2012. PMID 24307972 DOI: 10.1109/BIBM.2012.6392612  1
2012 Jiang Z, Zhou Y, Devarajan K, Slater CM, Daly MB, Chen X. Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis. Frontiers in Genetics. 3: 299. PMID 23267367 DOI: 10.3389/fgene.2012.00299  1
2012 Gao C, Devarajan K, Zhou Y, Slater CM, Daly MB, Chen X. Identifying breast cancer risk loci by global differential allele-specific expression (DASE) analysis in mammary epithelial transcriptome. Bmc Genomics. 13: 570. PMID 23107584 DOI: 10.1186/1471-2164-13-570  1
2012 Zaorsky NG, Li T, Devarajan K, Horwitz EM, Buyyounouski MK. Assessment of the American Joint Committee on Cancer staging (sixth and seventh editions) for clinically localized prostate cancer treated with external beam radiotherapy and comparison with the National Comprehensive Cancer Network risk-stratification method. Cancer. 118: 5535-43. PMID 22544661 DOI: 10.1002/cncr.27597  1
2012 Fleisher L, Kandadai V, Keenan E, Miller SM, Devarajan K, Ruth KJ, Rodoletz M, Bieber EJ, Weinberg DS. Build it, and will they come? Unexpected findings from a study on a Web-based intervention to improve colorectal cancer screening. Journal of Health Communication. 17: 41-53. PMID 22217118 DOI: 10.1080/10810730.2011.571338  1
2011 Anastassiadis T, Deacon SW, Devarajan K, Ma H, Peterson JR. Comprehensive assay of kinase catalytic activity reveals features of kinase inhibitor selectivity. Nature Biotechnology. 29: 1039-45. PMID 22037377 DOI: 10.1038/nbt.2017  1
2011 Clapper ML, Hensley HH, Chang WC, Devarajan K, Nguyen MT, Cooper HS. Detection of colorectal adenomas using a bioactivatable probe specific for matrix metalloproteinase activity. Neoplasia (New York, N.Y.). 13: 685-91. PMID 21847360 DOI: 10.1593/neo.11400  1
2011 Gupta V, Bassi DE, Simons JD, Devarajan K, Al-Saleem T, Uzzo RG, Cukierman E. Elevated expression of stromal palladin predicts poor clinical outcome in renal cell carcinoma. Plos One. 6: e21494. PMID 21738681 DOI: 10.1371/journal.pone.0021494  1
2011 Cortellino S, Xu J, Sannai M, Moore R, Caretti E, Cigliano A, Le Coz M, Devarajan K, Wessels A, Soprano D, Abramowitz LK, Bartolomei MS, Rambow F, Bassi MR, Bruno T, et al. Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair. Cell. 146: 67-79. PMID 21722948 DOI: 10.1016/j.cell.2011.06.020  1
2011 Sasaroli D, Gimotty PA, Pathak HB, Hammond R, Kougioumtzidou E, Katsaros D, Buckanovich R, Devarajan K, Sandaltzopoulos R, Godwin AK, Scholler N, Coukos G. Novel surface targets and serum biomarkers from the ovarian cancer vasculature. Cancer Biology & Therapy. 12: 169-80. PMID 21617380 DOI: 10.4161/cbt.12.3.16260  1
2011 Frank AK, Leu JI, Zhou Y, Devarajan K, Nedelko T, Klein-Szanto A, Hollstein M, Murphy ME. The codon 72 polymorphism of p53 regulates interaction with NF-{kappa}B and transactivation of genes involved in immunity and inflammation. Molecular and Cellular Biology. 31: 1201-13. PMID 21245379 DOI: 10.1128/MCB.01136-10  1
2011 Shatalova EG, Klein-Szanto AJ, Devarajan K, Cukierman E, Clapper ML. Estrogen and cytochrome P450 1B1 contribute to both early- and late-stage head and neck carcinogenesis. Cancer Prevention Research (Philadelphia, Pa.). 4: 107-15. PMID 21205741 DOI: 10.1158/1940-6207.CAPR-10-0133  1
2011 Devarajan K, Ebrahimi N. A semi-parametric generalization of the Cox proportional hazards regression model: Inference and Applications. Computational Statistics & Data Analysis. 55: 667-676. PMID 21076652 DOI: 10.1016/j.csda.2010.06.010  1
2011 Makhlin I, Zhang J, Long CJ, Devarajan K, Zhou Y, Klein-Szanto AJ, Huang M, Chernoff J, Boorjian SA. The mTOR pathway affects proliferation and chemosensitivity of urothelial carcinoma cells and is upregulated in a subset of human bladder cancers. Bju International. 108: E84-90. PMID 21050361 DOI: 10.1111/j.1464-410X.2010.09844.x  1
2010 Devarajan K, Zhou Y, Chachra N, Ebrahimi N. A supervised approach for predicting patient survival with gene expression data. Proceedings / Annual Ieee International Symposium On Bioinformatics and Bioengineering (Bibe). Ieee International Symposium On Bioinformatics and Bioengineering. 2010: 26-31. PMID 20865131 DOI: 10.1109/BIBE.2010.14  1
2010 Astsaturov I, Ratushny V, Sukhanova A, Einarson MB, Bagnyukova T, Zhou Y, Devarajan K, Silverman JS, Tikhmyanova N, Skobeleva N, Pecherskaya A, Nasto RE, Sharma C, Jablonski SA, Serebriiskii IG, et al. Synthetic lethal screen of an EGFR-centered network to improve targeted therapies. Science Signaling. 3: ra67. PMID 20858866 DOI: 10.1126/scisignal.2001083  1
2010 Meireles SI, Esteves GH, Hirata R, Peri S, Devarajan K, Slifker M, Mosier SL, Peng J, Vadhanam MV, Hurst HE, Neves EJ, Reis LF, Gairola CG, Gupta RC, Clapper ML. Early changes in gene expression induced by tobacco smoke: Evidence for the importance of estrogen within lung tissue. Cancer Prevention Research (Philadelphia, Pa.). 3: 707-17. PMID 20515954 DOI: 10.1158/1940-6207.CAPR-09-0162  1
2010 Ivey BS, Devarajan K, Sundaram CP. Bilateral oncocytoma and the value of needle biopsy. The Canadian Journal of Urology. 17: 5131-4. PMID 20398456  1
2010 Bellacosa A, Godwin AK, Peri S, Devarajan K, Caretti E, Vanderveer L, Bove B, Slater C, Zhou Y, Daly M, Howard S, Campbell KS, Nicolas E, Yeung AT, Clapper ML, et al. Altered gene expression in morphologically normal epithelial cells from heterozygous carriers of BRCA1 or BRCA2 mutations. Cancer Prevention Research (Philadelphia, Pa.). 3: 48-61. PMID 20051372 DOI: 10.1158/1940-6207.CAPR-09-0078  1
2009 Devarajan K, Ebrahimi N. Testing for Covariate Effect in the Cox Proportional Hazards Regression Model. Communications in Statistics: Theory and Methods. 38: 2333-2347. PMID 20054448 DOI: 10.1080/03610920802536958  1
2009 Hensley HH, Merkel CE, Chang WC, Devarajan K, Cooper HS, Clapper ML. Endoscopic imaging and size estimation of colorectal adenomas in the multiple intestinal neoplasia mouse. Gastrointestinal Endoscopy. 69: 742-9. PMID 19251020 DOI: 10.1016/j.gie.2008.09.054  1
2009 Schilder RJ, Pathak HB, Lokshin AE, Holloway RW, Alvarez RD, Aghajanian C, Min H, Devarajan K, Ross E, Drescher CW, Godwin AK. Phase II trial of single agent cetuximab in patients with persistent or recurrent epithelial ovarian or primary peritoneal carcinoma with the potential for dose escalation to rash. Gynecologic Oncology. 113: 21-7. PMID 19162309 DOI: 10.1016/j.ygyno.2008.12.003  1
2009 Fang CY, Cherry C, Devarajan K, Li T, Malick J, Daly MB. A prospective study of quality of life among women undergoing risk-reducing salpingo-oophorectomy versus gynecologic screening for ovarian cancer. Gynecologic Oncology. 112: 594-600. PMID 19141360 DOI: 10.1016/j.ygyno.2008.11.039  1
2008 Devarajan K. Nonnegative matrix factorization: an analytical and interpretive tool in computational biology. Plos Computational Biology. 4: e1000029. PMID 18654623 DOI: 10.1371/journal.pcbi.1000029  1
2008 Clapper ML, Gary MA, Coudry RA, Litwin S, Chang WC, Devarajan K, Lubet RA, Cooper HS. 5-aminosalicylic acid inhibits colitis-associated colorectal dysplasias in the mouse model of azoxymethane/dextran sulfate sodium-induced colitis. Inflammatory Bowel Diseases. 14: 1341-7. PMID 18452197 DOI: 10.1002/ibd.20489  1
2008 Shimizu I, Jellinek NJ, Dufresne RG, Li T, Devarajan K, Perlis C. Multiple antithrombotic agents increase the risk of postoperative hemorrhage in dermatologic surgery. Journal of the American Academy of Dermatology. 58: 810-6. PMID 18423258 DOI: 10.1016/j.jaad.2008.01.014  1
2008 Caretti E, Devarajan K, Coudry R, Ross E, Clapper ML, Cooper HS, Bellacosa A. Comparison of RNA amplification methods and chip platforms for microarray analysis of samples processed by laser capture microdissection. Journal of Cellular Biochemistry. 103: 556-63. PMID 17546586 DOI: 10.1002/jcb.21426  1
2008 Devarajan K, Ebrahimi N. Class discovery via nonnegative matrix factorization American Journal of Mathematical and Management Sciences. 28: 457-467.  1
2007 Rennefahrt UE, Deacon SW, Parker SA, Devarajan K, Beeser A, Chernoff J, Knapp S, Turk BE, Peterson JR. Specificity profiling of Pak kinases allows identification of novel phosphorylation sites. The Journal of Biological Chemistry. 282: 15667-78. PMID 17392278 DOI: 10.1074/jbc.M700253200  1
2005 Altomare DA, Vaslet CA, Skele KL, De Rienzo A, Devarajan K, Jhanwar SC, McClatchey AI, Kane AB, Testa JR. A mouse model recapitulating molecular features of human mesothelioma. Cancer Research. 65: 8090-5. PMID 16166281 DOI: 10.1158/0008-5472.CAN-05-2312  1
1998 Devarajan K, Ebrahimi N. A nonparametric approach to accelerated life testing under multiple stresses Naval Research Logistics. 45: 628-644.  1
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