Ruifeng Xu, Ph.D. - Publications

Affiliations: 
2007 University of Wisconsin, Madison, Madison, WI 
Area:
Statistics

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Quan Y, Liang F, Zhu Y, Chen Y, Xu Z, Du F, Lv K, Chen H, Qu L, Xu R, Zhang HY, Xiong J, Li Y. Integrated Analysis of DNA Methylation and Biochemical/Metabolic Parameter During the Long-Term Isolation Environment. Frontiers in Physiology. 10: 917. PMID 31402871 DOI: 10.3389/fphys.2019.00917  0.4
2019 Lan G, Zhou J, Xu R, Lu Q, Wang H. Cross-Cell-Type Prediction of TF-Binding Site by Integrating Convolutional Neural Network and Adversarial Network. International Journal of Molecular Sciences. 20. PMID 31336830 DOI: 10.3390/ijms20143425  0.44
2019 Zhou J, Lu Q, Gui L, Xu R, Long Y, Wang H. MTTFsite: Cross-cell-type TF Binding Site Prediction by using Multi-task Learning. Bioinformatics (Oxford, England). PMID 31161194 DOI: 10.1093/bioinformatics/btz451  0.44
2019 Zhou J, Lu Q, Xu R, Gui L, Wang H. Prediction of TF-binding site by inclusion of higher order position dependencies. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30629513 DOI: 10.1109/TCBB.2019.2892124  0.44
2018 Zhou J, Lu Q, Xu R, Gui L, Wang H. EL_LSTM: Prediction of DNA-binding residue from Protein sequence by Combining Long Short-Term Memory and Ensemble Learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30040656 DOI: 10.1109/TCBB.2018.2858806  0.44
2018 Zhou J, Wang H, Zhao Z, Xu R, Lu Q. CNNH_PSS: protein 8-class secondary structure prediction by convolutional neural network with highway. Bmc Bioinformatics. 19: 60. PMID 29745837 DOI: 10.1186/s12859-018-2067-8  0.44
2017 Zhou J, Lu Q, Xu R, He Y, Wang H. EL_PSSM-RT: DNA-binding residue prediction by integrating ensemble learning with PSSM Relation Transformation. Bmc Bioinformatics. 18: 379. PMID 28851273 DOI: 10.1186/s12859-017-1792-8  0.44
2016 Wei Q, Chen T, Xu R, He Y, Gui L. Disease named entity recognition by combining conditional random fields and bidirectional recurrent neural networks. Database : the Journal of Biological Databases and Curation. 2016. PMID 27777244 DOI: 10.1093/database/baw140  0.44
2016 Zhou J, Xu R, He Y, Lu Q, Wang H, Kong B. PDNAsite: Identification of DNA-binding Site from Protein Sequence by Incorporating Spatial and Sequence Context. Scientific Reports. 6: 27653. PMID 27282833 DOI: 10.1038/srep27653  0.32
2016 Liu X, Zhang C, Zhang C, Li J, Guo W, Yan D, Yang C, Zhao J, Xia T, Wang Y, Xu R, Wu X, Shi J. Heat shock protein 70 inhibits cardiomyocyte necroptosis through repressing autophagy in myocardial ischemia/reperfusion injury. In Vitro Cellular & Developmental Biology. Animal. PMID 27130675 DOI: 10.1007/s11626-016-0039-8  0.4
2016 Wang Z, Qiang H, Zhao H, Xu R, Zhang Z, Gao H, Wang X, Liu G, Zhang Y. Association Mapping for Fiber-Related Traits and Digestibility in Alfalfa (Medicago sativa). Frontiers in Plant Science. 7: 331. PMID 27047512 DOI: 10.3389/fpls.2016.00331  0.4
2016 Zhang L, Zeng J, Zeng Z, Wang F, Wang D, Chen C, Li C, An X, Xu R, Huang P, Ba Y, Li Y. MGMT in colorectal cancer: a promising component of personalized treatment. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 27006309 DOI: 10.1007/s13277-016-5014-1  0.32
2016 Wang RH, Zhu XF, Qian W, Zhao MH, Xu RK, Yu YC. Adsorption of Cd(II) by two variable-charge soils in the presence of pectin. Environmental Science and Pollution Research International. PMID 26996909 DOI: 10.1007/s11356-016-6465-z  0.6
2016 Zhou G, Wang M, Li Y, Xu R, Li X. Comprehensive analysis of 61 characteristic constituents from Siraitiae fructus using ultrahigh-pressure liquid chromatography with time-of-flight mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis. 125: 1-14. PMID 26994551 DOI: 10.1016/j.jpba.2016.03.010  0.4
2016 Zhao Q, Li X, Dong W, Ye M, Cao Y, Zhang M, Cheng Q, Zhou J, Chen G, Yu M, Hong S, Wei X, Wang B, Cui G, Zhang P, ... ... Xu R, et al. Factors Associated with Thrombolysis Outcome in Ischemic Stroke Patients with Atrial Fibrillation. Neuroscience Bulletin. PMID 26951522 DOI: 10.1007/s12264-016-0019-8  0.48
2016 Fu W, Liu N, Qiao Q, Wang M, Min J, Zhu B, Xu RM, Yang N. Structural Basis for Substrate Preference of SMYD3, A SET Domain-containing Protein Lysine Methyltransferase. The Journal of Biological Chemistry. PMID 26929412 DOI: 10.1074/jbc.M115.709832  0.4
2016 Wang Y, Chen Z, Luo G, He W, Xu K, Xu R, Lei Q, Tan J, Wu J, Xing MM. In-situ Generated Vasoactive Intestinal Peptide Loaded Microspheres in Mussel-inspired Polycaprolactone Nanosheets Creating Spatiotemporal Releasing Microenvironment to Promote Wound Healing and Angiogenesis. Acs Applied Materials & Interfaces. PMID 26914154 DOI: 10.1021/acsami.5b11332  0.48
2016 Zhang JL, Zhou Y, Xu RS, Wang GW, Jiao KX. Model of internet+CPPS for smart steel factory Kang T'Ieh/Iron and Steel. 51: 1-7. DOI: 10.13228/j.boyuan.issn0449-749x.20150256  0.44
2016 Li K, Tian J, Song Y, Liu J, Guoyu H, Xu R, Wang M, Fang X. Bi2Se3 as a saturable absorber for ultrafast photonic applications of Yb-doped fiber lasers Optical Engineering. 55. DOI: 10.1117/1.OE.55.3.036110  0.4
2016 Tong X, Liu Y, Hu Z, Chen H, Zhou L, Hu Q, Xu R, Deng L, Chen C, Yang L, Gao S. Accurate Determination of Sr Isotopic Compositions in Clinopyroxene and Silicate Glasses by LA-MC-ICP-MS Geostandards and Geoanalytical Research. 40: 85-99. DOI: 10.1111/j.1751-908X.2015.00315.x  0.4
2016 Guo F, Xia L, Xu R. Compact dual-band LTCC filter using folded resonators 2015 Ieee International Conference On Communication Problem-Solving, Iccp 2015. 297-299. DOI: 10.1109/ICCPS.2015.7454155  0.48
2016 Zhao X, Xu R, Xu Y. An improved nonlinear thermal resistance extraction method for AlGaN/GaN HEMTs 2015 Ieee International Conference On Communication Problem-Solving, Iccp 2015. 261-263. DOI: 10.1109/ICCPS.2015.7454145  0.48
2016 Chen Z, Xu Y, Xu R. Statistical modeling of GaN HEMT based on Monte Carlo simulations 2015 Ieee International Conference On Communication Problem-Solving, Iccp 2015. 105-108. DOI: 10.1109/ICCPS.2015.7454101  0.48
2016 Wang XB, Liu ZX, Yang CY, Xu R, Lu WG, Zhang LF, Wang Q, Wei SH, Yang CM, Wang HC, Wang RZ, Zhou R, Chen HZ, Chang RZ, Qiu LJ. Stability of growth periods traits for soybean cultivars across multiple locations Journal of Integrative Agriculture. 15: 963-972. DOI: 10.1016/S2095-3119(15)61152-2  0.6
2016 Wang M, Zhao J, Xu R, Fu N, Wang X. Preparation and photoluminescence properties of Tm3+-doped ZrO2 nanotube arrays Journal of Alloys and Compounds. 674: 353-359. DOI: 10.1016/j.jallcom.2016.03.084  0.4
2016 Xu R, Chen H, Liang X, Wang H. Priority-based constructive algorithms for scheduling agile earth observation satellites with total priority maximization Expert Systems With Applications. 51: 195-206. DOI: 10.1016/j.eswa.2015.12.039  0.4
2016 Xu Rs, Zhang Jl, Wang Gw, Zuo Hb, Zhang Pc, Shao Jg. Gasification behaviors and kinetic study on biomass chars in CO2 condition Chemical Engineering Research and Design. 107: 34-42. DOI: 10.1016/j.cherd.2015.10.014  0.44
2016 Xu R, Gui L, Lu Q, Wang S, Xu J. Incorporating multi-kernel function and Internet verification for Chinese person name disambiguation Frontiers of Computer Science. 1-13. DOI: 10.1007/s11704-016-4503-0  0.44
2016 Liu Zd, Wang Hc, Xu Rk. The effects of root surface charge and nitrogen forms on the adsorption of aluminum ions by the roots of rice with different aluminum tolerances Plant and Soil. 1-11. DOI: 10.1007/s11104-016-2909-y  0.6
2016 Gao T, Xu R, Kong Y, Zhou J, Zhang K, Kong C, Peng D, Chen T. Integrated enhancement/depletion-mode GaN MIS-HEMTs for high-speed mixed-signal applications Physica Status Solidi (a) Applications and Materials Science. DOI: 10.1002/pssa.201532805  0.44
2016 Zhang Y, Zhong W, Ren T, Chen Y, Yan B, Xu R. A 220 GHz frequency tripler based on 3D electromagnetic model of the schottky diode and the field-circuit co-simulation method Microwave and Optical Technology Letters. 58: 1647-1651. DOI: 10.1002/mop.29877  0.48
2016 Guo F, Xia L, Deng X, Xu R. An enhanced fraction polynomial microwave filter modeling method exploiting space mapping Microwave and Optical Technology Letters. 58: 1159-1163. DOI: 10.1002/mop.29751  0.48
2015 Liu B, Xu J, Fan S, Xu R, Zhou J, Wang X. PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou's PseAAC and Physicochemical Distance Transformation. Molecular Informatics. 34: 8-17. PMID 27490858 DOI: 10.1002/minf.201400025  0.44
2015 Yao Y, Liu Y, Lv X, Dong B, Wang F, Li J, Zhang Q, Xu R, Xu Y. Down-regulation of ribosomal protein S15A inhibits proliferation of human glioblastoma cells in vivo and in vitro via AKT pathway. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 26537582 DOI: 10.1007/s13277-015-4323-0  0.48
2015 Xu R, Zhou J, Wang H, He Y, Wang X, Liu B. Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation. Bmc Systems Biology. 9: S10. PMID 25708928 DOI: 10.1186/1752-0509-9-S1-S10  0.44
2015 Zhu K, Yang J, Luo K, Yang C, Zhang N, Xu R, Chen J, Jin M, Xu B, Guo N, Wang J, Chen Z, Cui Y, Zhao H, Wang Y, et al. TLR3 signaling in macrophages is indispensable for the protective immunity of invariant natural killer T cells against enterovirus 71 infection. Plos Pathogens. 11: e1004613. PMID 25615690 DOI: 10.1371/journal.ppat.1004613  0.48
2015 Xu R, Zhou J, Liu B, He Y, Zou Q, Wang X, Chou KC. Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach. Journal of Biomolecular Structure & Dynamics. 33: 1720-30. PMID 25252709 DOI: 10.1080/07391102.2014.968624  0.44
2015 Zheng G, Zhao J, Cheng X, Xu R, Zhao G. Experimental Investigation on Sialon Ceramic Inserts for Ultra-high-speed Milling of Inconel 718 Materials and Manufacturing Processes. DOI: 10.1080/10426914.2015.1019090  0.4
2015 Wang T, Feng L, Mou P, Wu J, Smith JLD, Xiao W, Yang H, Dou H, Zhao X, Cheng Y, Zhou B, Wu H, Zhang L, Tian Y, Guo Q, ... ... Xu R, et al. Amur tigers and leopards returning to China: direct evidence and a landscape conservation plan Landscape Ecology. DOI: 10.1007/s10980-015-0278-1  0.44
2014 Liu B, Xu J, Lan X, Xu R, Zhou J, Wang X, Chou KC. iDNA-Prot|dis: identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition. Plos One. 9: e106691. PMID 25184541 DOI: 10.1371/journal.pone.0106691  0.44
2014 Xu R, Zhou J, Liu B, Yao L, He Y, Zou Q, Wang X. enDNA-Prot: identification of DNA-binding proteins by applying ensemble learning. Biomed Research International. 2014: 294279. PMID 24977146 DOI: 10.1155/2014/294279  0.44
2014 Liu B, Xu J, Zou Q, Xu R, Wang X, Chen Q. Using distances between Top-n-gram and residue pairs for protein remote homology detection. Bmc Bioinformatics. 15: S3. PMID 24564580 DOI: 10.1186/1471-2105-15-S2-S3  0.4
2014 Liu B, Zhang D, Xu R, Xu J, Wang X, Chen Q, Dong Q, Chou KC. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinformatics (Oxford, England). 30: 472-9. PMID 24318998 DOI: 10.1093/bioinformatics/btt709  0.4
2011 Li YH, Wang F, Shen L, Deng YM, Shao Q, Feng F, An X, Wang FH, Wang ZQ, Xu RH, Shao JY. EGFR fluorescence in situ hybridization pattern of chromosome 7 disomy predicts resistance to cetuximab in KRAS wild-type metastatic colorectal cancer patients. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 17: 382-90. PMID 20884623 DOI: 10.1158/1078-0432.CCR-10-0208  0.32
2010 Dai X, Fang X, Su F, Yang M, Li H, Zhou J, Xu R. Accurate analysis of urea in milk and milk powder by isotope dilution gas chromatography-mass spectrometry. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 878: 1634-8. PMID 20434964 DOI: 10.1016/j.jchromb.2010.04.005  0.44
2005 Chen H, Xu R, Chen H, Cooks RG, Ouyang Z. Ion/molecule reactions in a miniature RIT mass spectrometer. Journal of Mass Spectrometry : Jms. 40: 1403-11. PMID 16255061 DOI: 10.1002/jms.924  0.4
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