Janet S. Sinsheimer - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 
Area:
Mathematics, Biostatistics Biology

204 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kusters CDJ, Paul KC, Duarte Folle A, Keener AM, Bronstein JM, Bertram L, Hansen J, Horvath S, Sinsheimer JS, Lill CM, Ritz BR. Increased Menopausal Age Reduces the Risk of Parkinson's Disease: A Mendelian Randomization Approach. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 34426982 DOI: 10.1002/mds.28760  1
2021 Pan DZ, Miao Z, Comenho C, Rajkumar S, Koka A, Lee SHT, Alvarez M, Kaminska D, Ko A, Sinsheimer JS, Mohlke KL, Mancuso N, Muñoz-Hernandez LL, Herrera-Hernandez M, Tusié-Luna MT, et al. Identification of TBX15 as an adipose master trans regulator of abdominal obesity genes. Genome Medicine. 13: 123. PMID 34340684 DOI: 10.1186/s13073-021-00939-2  1
2021 Chu BB, Sobel EM, Wasiolek R, Ko S, Sinsheimer JS, Zhou H, Lange K. A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl. Bioinformatics (Oxford, England). PMID 34289008 DOI: 10.1093/bioinformatics/btab489  1
2021 Chu BB, Sobel EM, Wasiolek R, Ko S, Sinsheimer JS, Zhou H, Lange K. A fast Data-Driven method for genotype imputation, phasing, and local ancestry inference: MendelImpute.jl. Bioinformatics (Oxford, England). PMID 34289008 DOI: 10.1093/bioinformatics/btab489  1
2021 German CA, Sinsheimer JS, Zhou J, Zhou H. WiSER: Robust and scalable estimation and inference of within-subject variances from intensive longitudinal data. Biometrics. PMID 34142722 DOI: 10.1111/biom.13506  1
2021 Landeros A, Ji X, Lange K, Stutz TC, Xu J, Sehl ME, Sinsheimer JS. An examination of school reopening strategies during the SARS-CoV-2 pandemic. Plos One. 16: e0251242. PMID 34014947 DOI: 10.1371/journal.pone.0251242  1
2021 Ji SS, German CA, Lange K, Sinsheimer JS, Zhou H, Zhou J, Sobel EM. Modern simulation utilities for genetic analysis. Bmc Bioinformatics. 22: 228. PMID 33941078 DOI: 10.1186/s12859-021-04086-8  1
2021 Stutz TC, Landeros A, Xu J, Sinsheimer JS, Sehl M, Lange K. Stochastic simulation algorithms for Interacting Particle Systems. Plos One. 16: e0247046. PMID 33651796 DOI: 10.1371/journal.pone.0247046  1
2020 Bryant L, Li D, Cox SG, Marchione D, Joiner EF, Wilson K, Janssen K, Lee P, March ME, Nair D, Sherr E, Fregeau B, Wierenga KJ, Wadley A, Mancini GMS, ... ... Sinsheimer JS, et al. Histone H3.3 beyond cancer: Germline mutations in cause a previously unidentified neurodegenerative disorder in 46 patients. Science Advances. 6. PMID 33268356 DOI: 10.1126/sciadv.abc9207  1
2020 Hung TKW, Dong TS, Chen Z, Elashoff D, Sinsheimer JS, Jacobs JP, Lagishetty V, Vora P, Stains J, Mayer EA, Gupta A. Understanding the Heterogeneity of Obesity and the Relationship to the Brain-Gut Axis. Nutrients. 12. PMID 33266058 DOI: 10.3390/nu12123701  0.01
2020 Studwell CM, Kelley EG, Sinsheimer JS, Palmer CGS, LeBlanc K. Family genetic result communication in rare and undiagnosed disease communities: Understanding the practice. Journal of Genetic Counseling. PMID 33108040 DOI: 10.1002/jgc4.1329  1
2020 Crandall CJ, Diamant AL, Maglione M, Thurston RC, Sinsheimer J. Genetic variation and hot flashes: A systematic review. The Journal of Clinical Endocrinology and Metabolism. PMID 32797194 DOI: 10.1210/Clinem/Dgaa536  1
2020 Landeros A, Ji X, Lange KL, Stutz TC, Xu J, Sehl ME, Sinsheimer JS. An Examination of School Reopening Strategies during the SARS-CoV-2 Pandemic. Medrxiv : the Preprint Server For Health Sciences. PMID 32793918 DOI: 10.1101/2020.08.05.20169086  1
2020 Levine AJ, Soontornniyomkij V, Masliah E, Sinsheimer JS, Ji SS, Horvath S, Singer EJ, Kallianpur A, Moore DJ. Correction to: A candidate gene study of intermediate histopathological phenotypes in HIV-associated neurocognitive disorders. Journal of Neurovirology. PMID 32632672 DOI: 10.1007/S13365-020-00871-Y  1
2020 Chu BB, Keys KL, German CA, Zhou H, Zhou JJ, Sobel EM, Sinsheimer JS, Lange K. Iterative hard thresholding in genome-wide association studies: Generalized linear models, prior weights, and double sparsity. Gigascience. 9. PMID 32491161 DOI: 10.1093/Gigascience/Giaa044  1
2020 Levine AJ, Soontornniyomkij V, Masliah E, Sinsheimer JS, Ji SS, Horvath S, Singer EJ, Kallianpur A, Moore DJ. A candidate gene study of intermediate histopathological phenotypes in HIV-associated neurocognitive disorders. Journal of Neurovirology. PMID 32394397 DOI: 10.1007/S13365-020-00846-Z  1
2020 vonHoldt BM, DeCandia AL, Heppenheimer E, Janowitz-Koch I, Shi R, Zhou H, German CA, Brzeski KE, Cassidy KA, Stahler DR, Sinsheimer JS. Heritability of inter-pack aggression in a wild pedigreed population of North American gray wolves. Molecular Ecology. PMID 31905256 DOI: 10.1111/Mec.15349  1
2019 German CA, Sinsheimer JS, Klimentidis YC, Zhou H, Zhou JJ. Ordered multinomial regression for genetic association analysis of ordinal phenotypes at Biobank scale. Genetic Epidemiology. PMID 31879980 DOI: 10.1002/Gepi.22276  1
2019 Lee H, Huang AY, Wang LK, Yoon AJ, Renteria G, Eskin A, Signer RH, Dorrani N, Nieves-Rodriguez S, Wan J, Douine ED, Woods JD, Dell'Angelica EC, Fogel BL, Martin MG, ... ... Sinsheimer JS, et al. Diagnostic utility of transcriptome sequencing for rare Mendelian diseases. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 31607746 DOI: 10.1038/S41436-019-0672-1  1
2019 Garske KM, Pan DZ, Miao Z, Bhagat YV, Comenho C, Robles CR, Benhammou JN, Alvarez M, Ko A, Ye CJ, Pisegna JR, Mohlke KL, Sinsheimer JS, Laakso M, Pajukanta P. Reverse gene-environment interaction approach to identify variants influencing body-mass index in humans. Nature Metabolism. 1: 630-642. PMID 31538139 DOI: 10.1038/s42255-019-0071-6  1
2019 Shih IF, Haan MN, Paul KC, Yu Y, Sinsheimer JS, Ritz B. The Role of Physical Activity and Inflammation for Mortality, Cognition, and Depressive Symptoms in older Mexican Americans. American Journal of Epidemiology. PMID 31497846 DOI: 10.1093/Aje/Kwz180  1
2019 Soontornniyomkij V, Moore DJ, Gouaux B, Soontornniyomkij B, Sinsheimer JS, Levine AJ. Associations of regional amyloid-β plaque and phospho-tau pathology with biological factors and neuropsychological functioning among HIV-infected adults. Journal of Neurovirology. PMID 31144289 DOI: 10.1007/S13365-019-00761-Y  1
2019 Zhou H, Sinsheimer JS, Bates DM, Chu BB, German CA, Ji SS, Keys KL, Kim J, Ko S, Mosher GD, Papp JC, Sobel EM, Zhai J, Zhou JJ, Lange K. OPENMENDEL: a cooperative programming project for statistical genetics. Human Genetics. PMID 30915546 DOI: 10.1007/S00439-019-02001-Z  1
2019 Chuang YH, Paul KC, Sinsheimer JS, Bronstein JM, Bordelon YM, Ritz B. Genetic variants in nicotinic receptors and smoking cessation in Parkinson's disease. Parkinsonism & Related Disorders. PMID 30777653 DOI: 10.1016/J.Parkreldis.2019.01.031  1
2018 Bolanos R, Martinez-Maza O, Zhang ZF, Hussain S, Sehl M, Sinsheimer JS, D'Souza G, Jenkins F, Wolinsky S, Detels R. Decreased levels of the serum inflammatory biomarkers, sGP130, IL-6, sCRP and BAFF, are associated with increased likelihood of AIDS related Kaposi's sarcoma in men who have sex with men. Cancer Research Frontiers. 4: 45-59. PMID 33521162 DOI: 10.17980/2018.45  1
2018 Landeros A, Stutz T, Keys KL, Alekseyenko A, Sinsheimer JS, Lange K, Sehl ME. BioSimulator.jl: Stochastic simulation in Julia. Computer Methods and Programs in Biomedicine. 167: 23-35. PMID 30501857 DOI: 10.1016/J.Cmpb.2018.09.009  1
2018 Lin LY, Chun-Chang S, O'Hearn J, Hui ST, Seldin M, Gupta P, Bondar G, Deng M, Jauhiainen R, Kuusisto J, Laakso M, Sinsheimer JS, Deb A, Rau C, Ren S, et al. Systems Genetics Approach to Biomarker Discovery: GPNMB and Heart Failure. G3 (Bethesda, Md.). PMID 30201759 DOI: 10.1534/G3.118.200655  1
2018 Pan DZ, Garske KM, Alvarez M, Bhagat YV, Boocock J, Nikkola E, Miao Z, Raulerson CK, Cantor RM, Civelek M, Glastonbury CA, Small KS, Boehnke M, Lusis AJ, Sinsheimer JS, et al. Author Correction: Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS. Nature Communications. 9: 3472. PMID 30135520 DOI: 10.1038/S41467-018-05849-3  1
2018 Lake JA, Larsen J, Tran DT, Sinsheimer JS. Uncovering the Genomic Origins of Life. Genome Biology and Evolution. PMID 29947758 DOI: 10.1093/Gbe/Evy129  1
2018 vonHoldt BM, Ji SS, Aardema ML, Stahler D, Udell MAR, Sinsheimer JS. Activity of genes with functions in human Williams-Beuren Syndrome are impacted by mobile element insertions in the gray wolf genome. Genome Biology and Evolution. PMID 29860323 DOI: 10.1093/Gbe/Evy112  1
2018 Pan DZ, Garske KM, Alvarez M, Bhagat YV, Boocock J, Nikkola E, Miao Z, Raulerson CK, Cantor RM, Civelek M, Glastonbury CA, Small KS, Boehnke M, Lusis AJ, Sinsheimer JS, et al. Integration of human adipocyte chromosomal interactions with adipose gene expression prioritizes obesity-related genes from GWAS. Nature Communications. 9: 1512. PMID 29666371 DOI: 10.1038/S41467-018-03554-9  1
2018 Paul KC, Sinsheimer JS, Cockburn M, Bronstein JM, Bordelon Y, Ritz B. NFE2L2, PPARGC1α, and pesticides and Parkinson's disease risk and progression. Mechanisms of Ageing and Development. PMID 29630901 DOI: 10.1016/J.Mad.2018.04.004  1
2018 Gilbert PS, Wu J, Simon MW, Sinsheimer JS, Alfaro ME. Filtering nucleotide sites by phylogenetic signal to noise ratio increases confidence in the Neoaves phylogeny generated from ultraconserved elements. Molecular Phylogenetics and Evolution. PMID 29626666 DOI: 10.1016/J.Ympev.2018.03.033  0.04
2018 Palmer CGS, McConkie-Rosell A, Holm IA, LeBlanc K, Sinsheimer JS, Briere LC, Dorrani N, Herzog MR, Lincoln S, Schoch K, Spillmann RC, Brokamp E. Understanding Adult Participant and Parent Empowerment Prior to Evaluation in the Undiagnosed Diseases Network. Journal of Genetic Counseling. PMID 29497923 DOI: 10.1007/S10897-018-0228-6  1
2017 Boudreault P, Wolfson A, Berman B, Venne VL, Sinsheimer JS, Palmer C. Bilingual Cancer Genetic Education Modules for the Deaf Community: Development and Evaluation of the Online Video Material. Journal of Genetic Counseling. PMID 29260487 DOI: 10.1007/S10897-017-0188-2  1
2017 Kusters CDJ, Paul KC, Guella I, Bronstein JM, Sinsheimer JS, Farrer MJ, Ritz BR. Dopamine receptors and BDNF-haplotypes predict dyskinesia in Parkinson's disease. Parkinsonism & Related Disorders. PMID 29191473 DOI: 10.1016/J.Parkreldis.2017.11.339  1
2017 vonHoldt BM, Shuldiner E, Koch IJ, Kartzinel RY, Hogan A, Brubaker L, Wanser S, Stahler D, Wynne CDL, Ostrander EA, Sinsheimer JS, Udell MAR. Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Science Advances. 3: e1700398. PMID 28776031 DOI: 10.1126/Sciadv.1700398  0.01
2017 Paul KC, Sinsheimer JS, Cockburn M, Bronstein JM, Bordelon Y, Ritz B. Organophosphate pesticides and PON1 L55M in Parkinson's disease progression. Environment International. 107: 75-81. PMID 28689109 DOI: 10.1016/J.Envint.2017.06.018  1
2017 Lorenzo Bermejo J, Boekstegers F, González Silos R, Marcelain K, Baez Benavides P, Barahona Ponce C, Müller B, Ferreccio C, Koshiol J, Fischer C, Peil B, Sinsheimer J, Fuentes Guajardo M, Barajas O, Gonzalez-Jose R, et al. Subtypes of Native American ancestry and leading causes of death: Mapuche ancestry-specific associations with gallbladder cancer risk in Chile. Plos Genetics. 13: e1006756. PMID 28542165 DOI: 10.1371/Journal.Pgen.1006756  0.01
2017 Crandall CJ, Manson JE, Hohensee C, Horvath S, Wactawski-Wende J, LeBlanc ES, Vitolins MZ, Nassir R, Sinsheimer JS. Association of genetic variation in the tachykinin receptor 3 locus with hot flashes and night sweats in the Women's Health Initiative Study. Menopause (New York, N.Y.). 24: 252-261. PMID 28231077 DOI: 10.1097/Gme.0000000000000763  1
2017 Clark MM, Chazara O, Sobel EM, Gjessing HK, Magnus P, Moffett A, Sinsheimer JS. Human Birth Weight and Reproductive Immunology: Testing for Interactions between Maternal and Offspring KIR and HLA-C Genes. Human Heredity. 81: 181-193. PMID 28214848 DOI: 10.1159/000456033  1
2017 Cybis GB, Sinsheimer JS, Bedford T, Rambaut A, Lemey P, Suchard MA. Bayesian nonparametric clustering in phylogenetics: modeling antigenic evolution in influenza. Statistics in Medicine. PMID 28098392 DOI: 10.1002/Sim.7196  1
2016 Magnus P, Sinsheimer JS, Clark MM, Chazara O, Sobel EM, Gjessing HK, Moffett A, Hodge SE, Greenberg DA, Kim W, Gordon D, Londono D, Patel P, Finch SJ, Heiman GA, et al. 45th European Mathematical Genetics Meeting (EMGM) 2017, Tartu, Estonia, April 4-7, 2017: Abstracts Human Heredity. 81: 211-238. PMID 28376496 DOI: 10.1159/000469638  1
2016 Chuang YH, Lill CM, Lee PC, Hansen J, Lassen CF, Bertram L, Greene N, Sinsheimer JS, Ritz B. Gene-Environment Interaction in Parkinson's Disease: Coffee, ADORA2A, and CYP1A2. Neuroepidemiology. 47: 192-200. PMID 28135712 DOI: 10.1159/000450855  1
2016 Allès B, Pouchieu C, Gruber A, Lebailly P, Loiseau H, Fabbro-Peray P, Letenneur L, Baldi I, Myung S, Kim H, Lee S, Park YC, Arquizan C, Bauchet L, Lassen CF, ... ... Sinsheimer JS, et al. New Zealand Applied Neurosciences Conference. Auckland, New Zealand, November 24-26, 2016: Abstracts Neuroepidemiology. 47: 125-144. PMID 27875819 DOI: 10.1159/000453097  1
2016 Gatto NM, Paul KC, Sinsheimer JS, Bronstein JM, Bordelon Y, Rausch R, Ritz B. Vitamin D receptor gene polymorphisms and cognitive decline in Parkinson's disease. Journal of the Neurological Sciences. 370: 100-106. PMID 27772736 DOI: 10.1016/J.Jns.2016.09.013  1
2016 Fejzo MS, Myhre R, Colodro-Conde L, Macgibbon K, Sinsheimer JS, Reddy MV, Pajukanta P, Nyholt DR, Wright MJ, Martin NG, Engel SM, Medland SE, Magnus P, Mullin PM. Hyperemesis gravidarum associated with RYR2 genetic analysis of hyperemesis gravidarum reveals association with intracellular calcium release channel (RYR2). Molecular and Cellular Endocrinology. PMID 27663074 DOI: 10.1016/J.Mce.2016.09.017  1
2016 Lee PC, Raaschou-Nielsen O, Lill CM, Bertram L, Sinsheimer JS, Hansen J, Ritz B. Gene-environment interactions linking air pollution and inflammation in Parkinson's disease. Environmental Research. 151: 713-720. PMID 27640071 DOI: 10.1016/J.Envres.2016.09.006  1
2016 Palmer CG, Boudreault P, Berman BA, Wolfson A, Duarte L, Venne VL, Sinsheimer JS. Bilingual approach to online cancer genetics education for Deaf American Sign Language users produces greater knowledge and confidence than English text only: A randomized study. Disability and Health Journal. PMID 27594054 DOI: 10.1016/J.Dhjo.2016.07.002  1
2016 Janowitz Koch I, Clark MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, McCoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves. Molecular Ecology. 25: 1838-55. PMID 27112634 DOI: 10.1111/Mec.13480  1
2016 Paul KC, Rausch R, Creek MM, Sinsheimer JS, Bronstein JM, Bordelon Y, Ritz B. APOE, MAPT, and COMT and Parkinson's Disease Susceptibility and Cognitive Symptom Progression. Journal of Parkinson's Disease. PMID 27061069 DOI: 10.3233/Jpd-150762  1
2016 Lake JA, Larsen J, Sarna B, de la Haba RR, Pu Y, Koo H, Zhao J, Sinsheimer JS. Rings Reconcile Genotypic and Phenotypic Evolution within the Proteobacteria. Genome Biology and Evolution. 8: 578. PMID 26966240 DOI: 10.1093/gbe/evw030  1
2016 Allès B, Pouchieu C, Gruber A, Lebailly P, Loiseau H, Fabbro-Peray P, Letenneur L, Baldi I, Myung S, Kim H, Lee S, Park YC, Arquizan C, Bauchet L, Lassen CF, ... ... Sinsheimer JS, et al. Contents Vol. 47, 2016 Neuroepidemiology. 47. DOI: 10.1159/000457912  1
2016 Ritz B, Paul K, Cui X, Liew Z, Cockburn M, Sinsheimer J, Bronstein J. S13-2 Identifying chemical agents that cause neurodegeneration in humans: insights gained from studying gene-environment interactions in parkinson’s disease Occupational and Environmental Medicine. 73. DOI: 10.1136/Oemed-2016-103951.313  1
2016 Janowitz Koch I, Clark MM, Thompson MJ, Deere-Machemer KA, Wang J, Duarte L, Gnanadesikan GE, Mccoy EL, Rubbi L, Stahler DR, Pellegrini M, Ostrander EA, Wayne RK, Sinsheimer JS, vonHoldt BM. The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves Molecular Ecology. DOI: 10.1111/mec.13480  1
2015 Cybis GB, Sinsheimer JS, Bedford T, Mather AE, Lemey P, Suchard MA. ASSESSING PHENOTYPIC CORRELATION THROUGH THE MULTIVARIATE PHYLOGENETIC LATENT LIABILITY MODEL. The Annals of Applied Statistics. 9: 969-991. PMID 27053974 DOI: 10.1214/15-Aoas821  1
2015 Lake JA, Larsen J, Sarna B, de la Haba RR, Pu Y, Koo H, Zhao J, Sinsheimer JS. Rings Reconcile Genotypic and Phenotypic Evolution within the Proteobacteria. Genome Biology and Evolution. PMID 26659922 DOI: 10.1093/Gbe/Evv221  1
2015 Levine AJ, Soontornniyomkij V, Achim CL, Masliah E, Gelman BB, Sinsheimer JS, Singer EJ, Moore DJ. Multilevel analysis of neuropathogenesis of neurocognitive impairment in HIV. Journal of Neurovirology. PMID 26637429 DOI: 10.1007/S13365-015-0410-7  1
2015 Clark MM, Blangero J, Dyer TD, Sobel EM, Sinsheimer JS. The Quantitative-MFG Test: A Linear Mixed Effect Model to Detect Maternal-Offspring Gene Interactions. Annals of Human Genetics. PMID 26567478 DOI: 10.1111/Ahg.12137  1
2015 Narayan S, Sinsheimer JS, Paul KC, Liew Z, Cockburn M, Bronstein JM, Ritz B. Genetic variability in ABCB1, occupational pesticide exposure, and Parkinson's disease. Environmental Research. 143: 98-106. PMID 26457621 DOI: 10.1016/J.Envres.2015.08.022  1
2015 Paul KC, Sinsheimer JS, Rhodes SL, Cockburn M, Bronstein J, Ritz B. Organophosphate Pesticide Exposures, Nitric Oxide Synthase Gene Variants, and Gene-Pesticide Interactions in a Case-Control Study of Parkinson's Disease, California (USA). Environmental Health Perspectives. PMID 26383258 DOI: 10.1289/Ehp.1408976  1
2015 Huertas-Vazquez A, Nelson CP, Sinsheimer JS, Reinier K, Uy-Evanado A, Teodorescu C, Ayala J, Hall AS, Gunson K, Jui J, Samani NJ, Chugh SS. Cumulative effects of common genetic variants on risk of sudden cardiac death. Ijc Heart & Vasculature. 7: 88-91. PMID 26114160 DOI: 10.1016/J.Ijcha.2015.03.001  1
2015 Gilbert PS, Chang J, Pan C, Sobel EM, Sinsheimer JS, Faircloth BC, Alfaro ME. Genome-wide ultraconserved elements exhibit higher phylogenetic informativeness than traditional gene markers in percomorph fishes. Molecular Phylogenetics and Evolution. 92: 140-146. PMID 26079130 DOI: 10.1016/J.Ympev.2015.05.027  1
2015 Gatto NM, Sinsheimer JS, Cockburn M, Escobedo LA, Bordelon Y, Ritz B. Vitamin D receptor gene polymorphisms and Parkinson's disease in a population with high ultraviolet radiation exposure. Journal of the Neurological Sciences. 352: 88-93. PMID 25890641 DOI: 10.1016/J.Jns.2015.03.043  1
2015 Rickabaugh TM, Baxter RM, Sehl M, Sinsheimer JS, Hultin PM, Hultin LE, Quach A, Martínez-Maza O, Horvath S, Vilain E, Jamieson BD. Acceleration of age-associated methylation patterns in HIV-1-infected adults. Plos One. 10: e0119201. PMID 25807146 DOI: 10.1371/Journal.Pone.0119201  1
2015 Lee PC, Bordelon Y, Bronstein J, Sinsheimer JS, Farrer M, Ritz B. Head injury, α-synuclein genetic variability and Parkinson's disease. European Journal of Neurology : the Official Journal of the European Federation of Neurological Societies. 22: 874-8. PMID 25370538 DOI: 10.1111/Ene.12585  1
2015 Han E, Sinsheimer JS, Novembre J. Fast and accurate site frequency spectrum estimation from low coverage sequence data. Bioinformatics (Oxford, England). 31: 720-7. PMID 25359894 DOI: 10.1093/Bioinformatics/Btu725  1
2014 Palmer CG, Boudreault P, Baldwin EE, Sinsheimer JS. Impact of genetic counseling and Connexin-26 and Connexin-30 testing on deaf identity and comprehension of genetic test results in a sample of deaf adults: a prospective, longitudinal study. Plos One. 9: e111512. PMID 25375116 DOI: 10.1371/Journal.Pone.0111512  1
2014 Lange K, Papp JC, Sinsheimer JS, Sobel EM. Next Generation Statistical Genetics: Modeling, Penalization, and Optimization in High-Dimensional Data. Annual Review of Statistics and Its Application. 1: 279-300. PMID 24955378 DOI: 10.1146/annurev-statistics-022513-115638  1
2014 Ngun TC, Ghahramani NM, Creek MM, Williams-Burris SM, Barseghyan H, Itoh Y, Sánchez FJ, McClusky R, Sinsheimer JS, Arnold AP, Vilain E. Feminized behavior and brain gene expression in a novel mouse model of Klinefelter Syndrome. Archives of Sexual Behavior. 43: 1043-57. PMID 24923877 DOI: 10.1007/S10508-014-0316-0  1
2014 Anastasopoulos E, Coleman AL, Wilson MR, Sinsheimer JS, Yu F, Katafigiotis S, Founti P, Salonikiou A, Pappas T, Koskosas A, Katopodi T, Lambropoulos A, Topouzis F. Association of LOXL1 polymorphisms with pseudoexfoliation, glaucoma, intraocular pressure, and systemic diseases in a Greek population. The Thessaloniki eye study. Investigative Ophthalmology & Visual Science. 55: 4238-43. PMID 24917141 DOI: 10.1167/Iovs.14-13991  1
2014 Ko A, Cantor RM, Weissglas-Volkov D, Nikkola E, Reddy PM, Sinsheimer JS, Pasaniuc B, Brown R, Alvarez M, Rodriguez A, Rodriguez-Guillen R, Bautista IC, Arellano-Campos O, Muñoz-Hernández LL, Salomaa V, et al. Amerindian-specific regions under positive selection harbour new lipid variants in Latinos. Nature Communications. 5: 3983. PMID 24886709 DOI: 10.1038/Ncomms4983  1
2014 Arboleda VA, Fleming A, Barseghyan H, Délot E, Sinsheimer JS, Vilain E. Regulation of sex determination in mice by a non-coding genomic region. Genetics. 197: 885-97. PMID 24793290 DOI: 10.1534/Genetics.113.160259  1
2014 Levine AJ, Reynolds S, Cox C, Miller EN, Sinsheimer JS, Becker JT, Martin E, Sacktor N. The longitudinal and interactive effects of HIV status, stimulant use, and host genotype upon neurocognitive functioning. Journal of Neurovirology. 20: 243-57. PMID 24737013 DOI: 10.1007/S13365-014-0241-Y  1
2014 Han E, Sinsheimer JS, Novembre J. Characterizing bias in population genetic inferences from low-coverage sequencing data Molecular Biology and Evolution. 31: 723-735. PMID 24288159 DOI: 10.1093/Molbev/Mst229  1
2014 Rhodes SL, Buchanan DD, Ahmed I, Taylor KD, Loriot MA, Sinsheimer JS, Bronstein JM, Elbaz A, Mellick GD, Rotter JI, Ritz B. Pooled analysis of iron-related genes in Parkinson's disease: association with transferrin. Neurobiology of Disease. 62: 172-8. PMID 24121126 DOI: 10.1016/J.Nbd.2013.09.019  1
2014 Sinsheimer JS, Creek MM. Statistical approaches for detecting transgenerational genetic effects in humans Epigenetics and Complex Traits. 247-264. DOI: 10.1007/978-1-4614-8078-5_11  1
2013 Panos SE, Hinkin CH, Singer EJ, Thames AD, Patel SM, Sinsheimer JS, Del Re AC, Gelman BB, Morgello S, Moore DJ, Levine AJ. Apolipoprotein-E genotype and human immunodeficiency virus-associated neurocognitive disorder: the modulating effects of older age and disease severity. Neurobehavioral Hiv Medicine. 5: 11-22. PMID 26617462 DOI: 10.2147/NBHIV.S39573  1
2013 Lake JA, Sinsheimer JS. The deep roots of the rings of life. Genome Biology and Evolution. 5: 2440-8. PMID 24281049 DOI: 10.1093/Gbe/Evt194  1
2013 Kobayashi Y, Boudreault P, Hill K, Sinsheimer JS, Palmer CG. Using a social marketing framework to evaluate recruitment of a prospective study of genetic counseling and testing for the deaf community. Bmc Medical Research Methodology. 13: 145. PMID 24274380 DOI: 10.1186/1471-2288-13-145  1
2013 Narayan S, Liew Z, Paul K, Lee PC, Sinsheimer JS, Bronstein JM, Ritz B. Household organophosphorus pesticide use and Parkinson's disease. International Journal of Epidemiology. 42: 1476-85. PMID 24057998 DOI: 10.1093/Ije/Dyt170  1
2013 Rhodes SL, Fitzmaurice AG, Cockburn M, Bronstein JM, Sinsheimer JS, Ritz B. Pesticides that inhibit the ubiquitin-proteasome system: effect measure modification by genetic variation in SKP1 in Parkinson׳s disease. Environmental Research. 126: 1-8. PMID 23988235 DOI: 10.1016/J.Envres.2013.08.001  1
2013 Lange K, Papp JC, Sinsheimer JS, Sripracha R, Zhou H, Sobel EM. Mendel: the Swiss army knife of genetic analysis programs. Bioinformatics (Oxford, England). 29: 1568-70. PMID 23610370 DOI: 10.1093/Bioinformatics/Btt187  1
2013 Lee PC, Rhodes SL, Sinsheimer JS, Bronstein J, Ritz B. Functional paraoxonase 1 variants modify the risk of Parkinson's disease due to organophosphate exposure. Environment International. 56: 42-7. PMID 23602893 DOI: 10.1016/J.Envint.2013.03.004  1
2013 Weissglas-Volkov D, Aguilar-Salinas CA, Nikkola E, Deere KA, Cruz-Bautista I, Arellano-Campos O, Muñoz-Hernandez LL, Gomez-Munguia L, Ordoñez-Sánchez ML, Reddy PM, Lusis AJ, Matikainen N, Taskinen MR, Riba L, Cantor RM, Sinsheimer JS, et al. Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci. Journal of Medical Genetics. 50: 298-308. PMID 23505323 DOI: 10.1136/Jmedgenet-2012-101461  1
2013 Palmer CG, Boudreault P, Baldwin EE, Fox M, Deignan JL, Kobayashi Y, Sininger Y, Grody W, Sinsheimer JS. Deaf genetic testing and psychological well-being in deaf adults. Journal of Genetic Counseling. 22: 492-507. PMID 23430402 DOI: 10.1007/S10897-013-9573-7  1
2013 Cybis GB, Sinsheimer JS, Lemey P, Suchard MA. Graph hierarchies for phylogeography. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120206. PMID 23382428 DOI: 10.1098/Rstb.2012.0206  1
2012 Riley L, Zhou H, Lange K, Sinsheimer JS, Sehl ME. Determining duration of HER2-targeted therapy using stem cell extinction models. Plos One. 7: e46613. PMID 23284608 DOI: 10.1371/Journal.Pone.0046613  1
2012 Reddy MV, Iatan I, Weissglas-Volkov D, Nikkola E, Haas BE, Juvonen M, Ruel I, Ruel MJ, Sinsheimer JS, Genest J, Pajukanta P. Exome sequencing identifies 2 rare variants for low high-density lipoprotein cholesterol in an extended family. Circulation. Cardiovascular Genetics. 5: 538-46. PMID 22923419 DOI: 10.1161/Circgenetics.112.963264  1
2012 Anastasopoulos E, Kakoulidou A, Coleman AL, Sinsheimer JS, Wilson MR, Yu F, Salonikiou A, Koskosas A, Pappas T, Founti P, Lambropoulos A, Topouzis F. Association of sequence variation in the CX3CR1 gene with geographic atrophy age-related macular degeneration in a Greek population. Current Eye Research. 37: 1148-55. PMID 22816662 DOI: 10.3109/02713683.2012.705413  1
2012 Sinsheimer JS, Little RJ, Lake JA. Rooting gene trees without outgroups: EP rooting. Genome Biology and Evolution. 4: 709-19. PMID 22593551 DOI: 10.1093/Gbe/Evs047  1
2012 Tom JA, Sinsheimer JS, Suchard MA. Does history repeat itself? Wavelets and the phylodynamics of influenza A. Molecular Biology and Evolution. 29: 1367-77. PMID 22160768 DOI: 10.1093/Molbev/Msr305  1
2012 Zhou JJ, Ghazalpour A, Sobel EM, Sinsheimer JS, Lange K. Quantitative trait Loci association mapping by imputation of strain origins in multifounder crosses. Genetics. 190: 459-73. PMID 22143921 DOI: 10.1534/Genetics.111.135095  1
2012 Deere KA, Grether GF, Sun A, Sinsheimer JS. Female mate preference explains countergradient variation in the sexual coloration of guppies (Poecilia reticulata). Proceedings. Biological Sciences / the Royal Society. 279: 1684-90. PMID 22113030 DOI: 10.1098/Rspb.2011.2132  1
2012 Levine AJ, Sinsheimer JS, Bilder R, Shapshak P, Singer EJ. Functional polymorphisms in dopamine-related genes: effect on neurocognitive functioning in HIV+ adults. Journal of Clinical and Experimental Neuropsychology. 34: 78-91. PMID 22082040 DOI: 10.1080/13803395.2011.623118  1
2012 Baldwin EE, Boudreault P, Fox M, Sinsheimer JS, Palmer CG. Effect of pre-test genetic counseling for deaf adults on knowledge of genetic testing. Journal of Genetic Counseling. 21: 256-72. PMID 21818696 DOI: 10.1007/S10897-011-9398-1  1
2011 Childs EJ, Sobel EM, Palmer CG, Sinsheimer JS. Detection of intergenerational genetic effects with application to HLA-B matching as a risk factor for schizophrenia. Human Heredity. 72: 161-72. PMID 22004985 DOI: 10.1159/000332051  1
2011 Sehl M, Zhou H, Sinsheimer JS, Lange KL. Extinction models for cancer stem cell therapy. Mathematical Biosciences. 234: 132-46. PMID 22001354 DOI: 10.1016/J.Mbs.2011.09.005  1
2011 Sinsheimer J. "Statistics 101"--a primer for the genetics of complex human disease. Cold Spring Harbor Protocols. 2011: 1190-9. PMID 21969626 DOI: 10.1101/Pdb.Top065870  1
2011 Weissglas-Volkov D, Calkin AC, Tusie-Luna T, Sinsheimer JS, Zelcer N, Riba L, Tino AM, Ordoñez-Sánchez ML, Cruz-Bautista I, Aguilar-Salinas CA, Tontonoz P, Pajukanta P. The N342S MYLIP polymorphism is associated with high total cholesterol and increased LDL receptor degradation in humans. The Journal of Clinical Investigation. 121: 3062-71. PMID 21765216 DOI: 10.1172/Jci45504  1
2011 Bocklandt S, Lin W, Sehl ME, Sánchez FJ, Sinsheimer JS, Horvath S, Vilain E. Epigenetic predictor of age. Plos One. 6: e14821. PMID 21731603 DOI: 10.1371/Journal.Pone.0014821  1
2011 Ghazalpour A, Bennett B, Petyuk VA, Orozco L, Hagopian R, Mungrue IN, Farber CR, Sinsheimer J, Kang HM, Furlotte N, Park CC, Wen PZ, Brewer H, Weitz K, Camp DG, et al. Comparative analysis of proteome and transcriptome variation in mouse. Plos Genetics. 7: e1001393. PMID 21695224 DOI: 10.1371/Journal.Pgen.1001393  1
2011 Zhou JJ, Pelka S, Lange K, Palmer CG, Sinsheimer JS. Dissecting prenatal, postnatal, and inherited effects: ART and design. Genetic Epidemiology. 35: 437-46. PMID 21638309 DOI: 10.1002/Gepi.20591  1
2011 Suwanwela J, Lee J, Lin A, Ucer TC, Devlin H, Sinsheimer J, Garrett NR, Nishimura I. A genetic association study of single nucleotide polymorphisms in FGFR1OP2/wit3.0 and long-term atrophy of edentulous mandible. Plos One. 6: e16204. PMID 21283824 DOI: 10.1371/Journal.Pone.0016204  1
2011 Zhou H, Alexander DH, Sehl ME, Sinsheimer JS, Sobel EM, Lange K. Penalized regression for genome-wide association screening of sequence data. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 106-17. PMID 21121038  1
2011 Rhodes SL, Sinsheimer JS, Bordelon Y, Bronstein JM, Ritz B. Replication of GWAS associations for GAK and MAPT in Parkinson's disease. Annals of Human Genetics. 75: 195-200. PMID 21058943 DOI: 10.1111/J.1469-1809.2010.00616.X  1
2010 Tom JA, Sinsheimer JS, Suchard MA. Reuse, Recycle, Reweigh: Combating Influenza through Efficient Sequential Bayesian Computation for Massive Data. The Annals of Applied Statistics. 4: 1722-1748. PMID 26681992 DOI: 10.1214/10-Aoas349  1
2010 Sinsheimer JS, Elston RC, Fu WJ. Gene-gene interaction in maternal and perinatal research. Journal of Biomedicine & Biotechnology. 2010. PMID 20798776 DOI: 10.1155/2010/853612  1
2010 Zhou H, Sehl ME, Sinsheimer JS, Lange K. Association screening of common and rare genetic variants by penalized regression. Bioinformatics (Oxford, England). 26: 2375-82. PMID 20693321 DOI: 10.1093/Bioinformatics/Btq448  1
2010 Childs EJ, Palmer CG, Lange K, Sinsheimer JS. Modeling maternal-offspring gene-gene interactions: the extended-MFG test. Genetic Epidemiology. 34: 512-21. PMID 20552637 DOI: 10.1002/Gepi.20508  1
2010 Boudreault P, Baldwin EE, Fox M, Dutton L, Tullis L, Linden J, Kobayashi Y, Zhou J, Sinsheimer JS, Sininger Y, Grody WW, Palmer CG. Deaf adults' reasons for genetic testing depend on cultural affiliation: results from a prospective, longitudinal genetic counseling and testing study. Journal of Deaf Studies and Deaf Education. 15: 209-27. PMID 20488870 DOI: 10.1093/Deafed/Enq012  1
2010 van Nas A, Ingram-Drake L, Sinsheimer JS, Wang SS, Schadt EE, Drake T, Lusis AJ. Expression quantitative trait loci: replication, tissue- and sex-specificity in mice. Genetics. 185: 1059-68. PMID 20439777 DOI: 10.1534/Genetics.110.116087  1
2010 Weissglas-Volkov D, Aguilar-Salinas CA, Sinsheimer JS, Riba L, Huertas-Vazquez A, Ordoñez-Sánchez ML, Rodriguez-Guillen R, Cantor RM, Tusie-Luna T, Pajukanta P. Investigation of variants identified in caucasian genome-wide association studies for plasma high-density lipoprotein cholesterol and triglycerides levels in Mexican dyslipidemic study samples. Circulation. Cardiovascular Genetics. 3: 31-8. PMID 20160193 DOI: 10.1161/Circgenetics.109.908004  1
2010 Cantor RM, Lange K, Sinsheimer JS. Prioritizing GWAS results: A review of statistical methods and recommendations for their application. American Journal of Human Genetics. 86: 6-22. PMID 20074509 DOI: 10.1016/J.Ajhg.2009.11.017  1
2010 Weissglas-Volkov D, Plaisier CL, Huertas-Vazquez A, Cruz-Bautista I, Riaño-Barros D, Herrera-Hernandez M, Riba L, Cantor RM, Sinsheimer JS, Aguilar-Salinas CA, Tusie-Luna T, Pajukanta P. Identification of two common variants contributing to serum apolipoprotein B levels in Mexicans. Arteriosclerosis, Thrombosis, and Vascular Biology. 30: 353-9. PMID 19965785 DOI: 10.1161/Atvbaha.109.196402  1
2010 Riley LA, Zhou H, Lange K, Sinsheimer JS, Sehl ME. Abstract 104: Breast cancer stem cell extinction models: Implications for HER2 targeted therapy Cancer Research. 70: 104-104. DOI: 10.1158/1538-7445.Am10-104  1
2009 Levine AJ, Singer EJ, Sinsheimer JS, Hinkin CH, Papp J, Dandekar S, Giovanelli A, Shapshak P. CCL3 genotype and current depression increase risk of HIV-associated dementia. Neurobehavioral Hiv Medicine. 1: 1-7. PMID 20725607  1
2009 Sehl ME, Sinsheimer JS, Zhou H, Lange KL. Differential destruction of stem cells: implications for targeted cancer stem cell therapy. Cancer Research. 69: 9481-9. PMID 19996291 DOI: 10.1158/0008-5472.Can-09-2070  1
2009 Bonneaud C, Sinsheimer JS, Richard M, Chastel O, Sorci G. Mhc polymorphisms fail to explain the heritability of phytohaemagglutinin-induced skin swelling in a wild passerine. Biology Letters. 5: 784-7. PMID 19671600 DOI: 10.1098/Rsbl.2009.0435  1
2009 Meex SJ, Weissglas-Volkov D, van der Kallen CJ, Thuerauf DJ, van Greevenbroek MM, Schalkwijk CG, Stehouwer CD, Feskens EJ, Heldens L, Ayoubi TA, Hofker MH, Wouters BG, Vlietinck R, Sinsheimer JS, Taskinen MR, et al. The ATF6-Met[67]Val substitution is associated with increased plasma cholesterol levels. Arteriosclerosis, Thrombosis, and Vascular Biology. 29: 1322-7. PMID 19667116 DOI: 10.1161/Atvbaha.108.180240  1
2009 Crandall CJ, Sehl ME, Crawford SL, Gold EB, Habel LA, Butler LM, Sowers MR, Greendale GA, Sinsheimer JS. Sex steroid metabolism polymorphisms and mammographic density in pre- and early perimenopausal women. Breast Cancer Research : Bcr. 11: R51. PMID 19630952 DOI: 10.1186/Bcr2340  1
2009 Sinsheimer J. Statistical genetic approaches for mapping ophthalmic trait and disease genes. American Journal of Ophthalmology. 148: 183-5. PMID 19619719 DOI: 10.1016/J.Ajo.2009.02.004  1
2009 Zhou JJ, Lange K, Papp JC, Sinsheimer JS. A heterozygote-homozygote test of Hardy-Weinberg equilibrium. European Journal of Human Genetics : Ejhg. 17: 1495-500. PMID 19367317 DOI: 10.1038/Ejhg.2009.57  1
2009 Sehl ME, Langer LR, Papp JC, Kwan L, Seldon JL, Arellano G, Reiss J, Reed EF, Dandekar S, Korin Y, Sinsheimer JS, Zhang ZF, Ganz PA. Associations between single nucleotide polymorphisms in double-stranded DNA repair pathway genes and familial breast cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 15: 2192-203. PMID 19276285 DOI: 10.1158/1078-0432.Ccr-08-1417  1
2009 Plaisier CL, Kyttälä M, Weissglas-Volkov D, Sinsheimer JS, Huertas-Vazquez A, Riba L, Ramírez-Jiménez S, de Bruin TW, Tusié-Luna T, Aouizerat BE, Pullinger CR, Malloy MJ, Kane JP, Cruz-Bautista I, Herrera MF, et al. Galanin preproprotein is associated with elevated plasma triglycerides. Arteriosclerosis, Thrombosis, and Vascular Biology. 29: 147-52. PMID 18988886 DOI: 10.1161/Atvbaha.108.178533  1
2009 Bauman LE, Sinsheimer JS, Sobel EM, Lange K. Mixed effects models for quantitative trait loci mapping with inbred strains (Genetics 180, (1743-1761)) Genetics. 182: 411.  1
2008 Bauman LE, Sinsheimer JS, Sobel EM, Lange K. Mixed effects models for quantitative trait loci mapping with inbred strains. Genetics. 180: 1743-61. PMID 18791243 DOI: 10.1534/Genetics.108.091058  1
2008 Palmer CG, Mallery E, Turunen JA, Hsieh HJ, Peltonen L, Lonnqvist J, Woodward JA, Sinsheimer JS. Effect of Rhesus D incompatibility on schizophrenia depends on offspring sex. Schizophrenia Research. 104: 135-45. PMID 18692992 DOI: 10.1016/J.Schres.2008.06.022  1
2008 Nikolova G, Sinsheimer JS, Eicher EM, Vilain E. The chromosome 11 region from strain 129 provides protection from sex reversal in XYPOS mice. Genetics. 179: 419-27. PMID 18458101 DOI: 10.1534/Genetics.108.088088  1
2008 Seitzman RL, Mahajan VB, Mangione C, Cauley JA, Ensrud KE, Stone KL, Cummings SR, Hochberg MC, Hillier TA, Sinsheimer JS, Yu F, Coleman AL. Estrogen receptor alpha and matrix metalloproteinase 2 polymorphisms and age-related maculopathy in older women. American Journal of Epidemiology. 167: 1217-25. PMID 18359774 DOI: 10.1093/Aje/Kwn024  1
2008 Sinsheimer JS, Plaisier CL, Huertas-Vazquez A, Aguilar-Salinas C, Tusie-Luna T, Pajukanta P, Lange K. Estimating ethnic admixture from pedigree data. American Journal of Human Genetics. 82: 748-55. PMID 18319077 DOI: 10.1016/J.Ajhg.2007.12.014  1
2008 Lee YC, Morgenstern H, Greenland S, Tashkin DP, Papp J, Sinsheimer J, Cao W, Hashibe M, You NC, Mao JT, Cozen W, Mack TM, Zhang ZF. A case-control study of the association of the polymorphisms and haplotypes of DNA ligase I with lung and upper-aerodigestive-tract cancers. International Journal of Cancer. Journal International Du Cancer. 122: 1630-8. PMID 18059021 DOI: 10.1002/Ijc.23274  1
2008 Huertas-Vazquez A, Plaisier C, Weissglas-Volkov D, Sinsheimer J, Canizales-Quinteros S, Cruz-Bautista I, Nikkola E, Herrera-Hernandez M, Davila-Cervantes A, Tusie-Luna T, Taskinen MR, Aguilar-Salinas C, Pajukanta P. TCF7L2 is associated with high serum triacylglycerol and differentially expressed in adipose tissue in families with familial combined hyperlipidaemia. Diabetologia. 51: 62-9. PMID 17972059 DOI: 10.1007/S00125-007-0850-6  1
2007 Hsieh HJ, Palmer CG, Harney S, Chen HW, Bauman L, Brown MA, Sinsheimer JS. Using the maternal-fetal genotype incompatibility test to assess non-inherited maternal HLA-DRB1 antigen coding alleles as rheumatoid arthritis risk factors. Bmc Proceedings. 1: S124. PMID 18466466 DOI: 10.1186/1753-6561-1-S1-S124  1
2007 Lee JC, Weissglas-Volkov D, Kyttälä M, Sinsheimer JS, Jokiaho A, de Bruin TW, Lusis AJ, Brennan ML, van Greevenbroek MM, van der Kallen CJ, Hazen SL, Pajukanta P. USF1 contributes to high serum lipid levels in Dutch FCHL families and U.S. whites with coronary artery disease. Arteriosclerosis, Thrombosis, and Vascular Biology. 27: 2222-7. PMID 17673701 DOI: 10.1161/Atvbaha.107.151530  1
2007 McDonnell SM, Sinsheimer J, Price AJ, Carr AJ. Genetic influences in the aetiology of anteromedial osteoarthritis of the knee. The Journal of Bone and Joint Surgery. British Volume. 89: 901-3. PMID 17673582 DOI: 10.1302/0301-620X.89B7.18915  1
2007 Wahner AD, Sinsheimer JS, Bronstein JM, Ritz B. Inflammatory cytokine gene polymorphisms and increased risk of Parkinson disease. Archives of Neurology. 64: 836-40. PMID 17562931 DOI: 10.1001/Archneur.64.6.836  1
2007 Loughlin J, Meulenbelt I, Min J, Mustafa Z, Sinsheimer JS, Carr A, Slagboom PE. Genetic association analysis of RHOB and TXNDC3 in osteoarthritis. American Journal of Human Genetics. 80: 383-6; author reply . PMID 17304710 DOI: 10.1086/511443  1
2007 Snelling S, Sinsheimer JS, Carr A, Loughlin J. Genetic association analysis of LRCH1 as an osteoarthritis susceptibility locus. Rheumatology (Oxford, England). 46: 250-2. PMID 16891653 DOI: 10.1093/Rheumatology/Kel265  1
2006 Hsieh HJ, Palmer CG, Sinsheimer JS. Allowing for missing data at highly polymorphic genes when testing for maternal, offspring and maternal-fetal genotype incompatibility effects. Human Heredity. 62: 165-74. PMID 17065817 DOI: 10.1159/000096444  1
2006 Kim S, Kim Y, Liang T, Sinsheimer JS, Chow SA. A high-throughput method for cloning and sequencing human immunodeficiency virus type 1 integration sites. Journal of Virology. 80: 11313-21. PMID 16971446 DOI: 10.1128/Jvi.01737-06  1
2006 Palmer CG, Hsieh HJ, Reed EF, Lonnqvist J, Peltonen L, Woodward JA, Sinsheimer JS. HLA-B maternal-fetal genotype matching increases risk of schizophrenia. American Journal of Human Genetics. 79: 710-5. PMID 16960807 DOI: 10.1086/507829  1
2006 Minassian SL, Palmer CG, Turunen JA, Paunio T, Lönnqvist J, Peltonen L, Woodward JA, Sinsheimer JS. Incorporating serotypes into family based association studies using the MFG test. Annals of Human Genetics. 70: 541-53. PMID 16759185 DOI: 10.1111/J.1469-1809.2005.00243.X  1
2006 Hsieh HJ, Palmer CG, Harney S, Newton JL, Wordsworth P, Brown MA, Sinsheimer JS. The v-MFG test: investigating maternal, offspring and maternal-fetal genetic incompatibility effects on disease and viability. Genetic Epidemiology. 30: 333-47. PMID 16607625 DOI: 10.1002/Gepi.20148  1
2006 Chapman K, Carr A, Loughlin J, Sinsheimer JS. Presence of a primary hip osteoarthritis susceptibility locus on chromosome 6: comment on the article by Meenagh et al. Arthritis and Rheumatism. 54: 1026-7. PMID 16508987 DOI: 10.1002/Art.21676  1
2006 Loughlin J, Sinsheimer JS, Carr A, Chapman K. The CALM1 core promoter polymorphism is not associated with hip osteoarthritis in a United Kingdom Caucasian population. Osteoarthritis and Cartilage / Oars, Osteoarthritis Research Society. 14: 295-8. PMID 16359877 DOI: 10.1016/J.Joca.2005.11.001  1
2005 Mustafa Z, Dowling B, Chapman K, Sinsheimer JS, Carr A, Loughlin J. Investigating the aspartic acid (D) repeat of asporin as a risk factor for osteoarthritis in a UK Caucasian population. Arthritis and Rheumatism. 52: 3502-6. PMID 16255042 DOI: 10.1002/Art.21399  1
2005 Bauman LE, Almasy L, Blangero J, Duggirala R, Sinsheimer JS, Lange K. Fishing for pleiotropic QTLs in a polygenic sea. Annals of Human Genetics. 69: 590-611. PMID 16138917 DOI: 10.1111/J.1529-8817.2005.00181.X  1
2005 Suchard MA, Weiss RE, Sinsheimer JS. Models for estimating bayes factors with applications to phylogeny and tests of monophyly. Biometrics. 61: 665-73. PMID 16135017 DOI: 10.1111/J.1541-0420.2005.00352.X  1
2005 Lange K, Sinsheimer JS, Sobel E. Association testing with Mendel. Genetic Epidemiology. 29: 36-50. PMID 15834862 DOI: 10.1002/Gepi.20073  1
2005 McKenzie CA, Sinsheimer JS, Adeyemo AA, Cox RD, Southam L, Hugill A, Bouzekri N, Lathrop M, Forrester TE, Cooper RS, Ward R. SNP haplotypes in the angiotensin I-converting enzyme (ACE) gene: analysis of Nigerian family data using gamete competition models. Annals of Human Genetics. 69: 227-32. PMID 15720304 DOI: 10.1046/J.1529-8817.2004.00142.X  1
2005 Kraft P, Hsieh HJ, Cordell HJ, Sinsheimer J. A conditional-on-exchangeable-parental-genotypes likelihood that remains unbiased at the causal locus under multiple-affected-sibling ascertainment. Genetic Epidemiology. 29: 87-90. PMID 15712221 DOI: 10.1002/Gepi.20069  1
2005 Minassian SL, Palmer CG, Sinsheimer JS. An exact maternal-fetal genotype incompatibility (MFG) test. Genetic Epidemiology. 28: 83-95. PMID 15368616 DOI: 10.1002/Gepi.20027  1
2005 McKenzie CA, Sinsheimer JS, Adeyemo AA, Cox RD, Southam L, Hugill A, Bouzekri N, Lathrop M, Forrester TE, Cooper RS, Ward R. SNP Haplotypes in the Angiotensin I-Converting Enzyme (ACE) Gene: Analysis of Nigerian Family Data Using Gamete Competition Models: Gamete Competition for Nigerian ACE SNPs Annals of Human Genetics. 69: 227-232. DOI: 10.1046/J.1469-1809.2004.00142.X  1
2004 Lange K, Sinsheimer JS. The pedigree trimming problem. Human Heredity. 58: 108-11. PMID 15711090 DOI: 10.1159/000083031  1
2004 Fang G, Kuiken C, Weiser B, Rowland-Jones S, Plummer F, Chen CH, Kaul R, Anzala AO, Bwayo J, Kimani J, Philpott SM, Kitchen C, Sinsheimer JS, Gaschen B, Lang D, et al. Long-term survivors in Nairobi: complete HIV-1 RNA sequences and immunogenetic associations. The Journal of Infectious Diseases. 190: 697-701. PMID 15272396 DOI: 10.1086/421504  1
2004 Mar R, Pajukanta P, Allayee H, Groenendijk M, Dallinga-Thie G, Krauss RM, Sinsheimer JS, Cantor RM, de Bruin TW, Lusis AJ. Association of the APOLIPOPROTEIN A1/C3/A4/A5 gene cluster with triglyceride levels and LDL particle size in familial combined hyperlipidemia. Circulation Research. 94: 993-9. PMID 15001527 DOI: 10.1161/01.Res.0000124922.61830.F0  1
2004 Pajukanta P, Lilja HE, Sinsheimer JS, Cantor RM, Lusis AJ, Gentile M, Duan XJ, Soro-Paavonen A, Naukkarinen J, Saarela J, Laakso M, Ehnholm C, Taskinen MR, Peltonen L. Familial combined hyperlipidemia is associated with upstream transcription factor 1 (USF1). Nature Genetics. 36: 371-6. PMID 14991056 DOI: 10.1038/Ng1320  1
2004 Kraft P, Palmer CG, Woodward AJ, Turunen JA, Minassian S, Paunio T, Lönnqvist J, Peltonen L, Sinsheimer JS. RHD maternal-fetal genotype incompatibility and schizophrenia: extending the MFG test to include multiple siblings and birth order. European Journal of Human Genetics : Ejhg. 12: 192-8. PMID 14735156 DOI: 10.1038/Sj.Ejhg.5201129  1
2004 Dorman KS, Sinsheimer JS, Lange K. In the garden of branching processes Siam Review. 46: 202-229. DOI: 10.1137/S0036144502417843  1
2003 Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE. Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains. Applied Bioinformatics. 2: 131-44. PMID 15130798  1
2003 Suchard MA, Kitchen CM, Sinsheimer JS, Weiss RE. Hierarchical phylogenetic models for analyzing multipartite sequence data. Systematic Biology. 52: 649-64. PMID 14530132 DOI: 10.1080/10635150390238879  1
2003 Duncan EL, Cardon LR, Sinsheimer JS, Wass JA, Brown MA. Site and gender specificity of inheritance of bone mineral density. Journal of Bone and Mineral Research : the Official Journal of the American Society For Bone and Mineral Research. 18: 1531-8. PMID 12929944 DOI: 10.1359/Jbmr.2003.18.8.1531  1
2003 Suchard MA, Weiss RE, Sinsheimer JS. Testing a molecular clock without an outgroup: derivations of induced priors on branch-length restrictions in a Bayesian framework. Systematic Biology. 52: 48-54. PMID 12554439 DOI: 10.1080/10635150390132713  1
2003 Sinsheimer JS, Palmer CG, Woodward JA. Detecting genotype combinations that increase risk for disease: maternal-fetal genotype incompatibility test. Genetic Epidemiology. 24: 1-13. PMID 12508251 DOI: 10.1002/Gepi.10211  1
2003 Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. Inferring spatial phylogenetic variation along nucleotide sequences: A multiple changepoint model Journal of the American Statistical Association. 98: 427-437. DOI: 10.1198/016214503000215  1
2003 Suchard MA, Weiss RE, Sinsheimer JS, Dorman KS, Patel M, McCabe ERB. Evolutionary Similarity Among Genes Journal of the American Statistical Association. 98: 653-662. DOI: 10.1198/016214503000000558  1
2002 Palmer CG, Turunen JA, Sinsheimer JS, Minassian S, Paunio T, Lönnqvist J, Peltonen L, Woodward JA. RHD maternal-fetal genotype incompatibility increases schizophrenia susceptibility. American Journal of Human Genetics. 71: 1312-9. PMID 12439825 DOI: 10.1086/344659  1
2002 Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS. Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage. Systematic Biology. 51: 715-28. PMID 12396586 DOI: 10.1080/10635150290102384  1
2002 Schadt EE, Sinsheimer JS, Lange K. Applications of codon and rate variation models in molecular phylogeny. Molecular Biology and Evolution. 19: 1550-62. PMID 12200482 DOI: 10.1093/Oxfordjournals.Molbev.A004217  1
2002 Auranen M, Vanhala R, Varilo T, Ayers K, Kempas E, Ylisaukko-Oja T, Sinsheimer JS, Peltonen L, Järvelä I. A genomewide screen for autism-spectrum disorders: evidence for a major susceptibility locus on chromosome 3q25-27. American Journal of Human Genetics. 71: 777-90. PMID 12192642 DOI: 10.1086/342720  1
2002 Dorman KS, Kaplan AH, Sinsheimer JS. Bootstrap confidence levels for HIV-1 recombination. Journal of Molecular Evolution. 54: 200-9. PMID 11821913 DOI: 10.1007/S00239-001-0002-4  1
2001 Sinsheimer JS, Mckenzie CA, Keavney B, Lange K. SNPs and snails and puppy dogs' tail: Analysis of SNP haplotype data using the gamete competition model Annals of Human Genetics. 65: 483-490. PMID 11806856 DOI: 10.1017/S0003480001008843  1
2001 Suchard MA, Bailey JN, Elashoff DA, Sinsheimer JS. SNPing away at candidate genes Genetic Epidemiology. 21: S643-S648. PMID 11793754 DOI: 10.1002/Gepi.2001.21.S1.S643  1
2001 Ekelund J, Hovatta I, Parker A, Paunio T, Varilo T, Martin R, Suhonen J, Ellonen P, Chan G, Sinsheimer JS, Sobel E, Juvonen H, Arajärvi R, Partonen T, Suvisaari J, et al. Chromosome 1 loci in Finnish schizophrenia families Human Molecular Genetics. 10: 1611-1617. PMID 11468279 DOI: 10.1093/Hmg/10.15.1611  1
2001 Suchard MA, Weiss RE, Sinsheimer JS. Bayesian selection of continuous-time Markov chain evolutionary models. Molecular Biology and Evolution. 18: 1001-13. PMID 11371589 DOI: 10.1093/Oxfordjournals.Molbev.A003872  1
2001 Pajukanta P, Bodnar JS, Sallinen R, Chu M, Airaksinen T, Xiao Q, Castellani LW, Sheth SS, Wessman M, Palotie A, Sinsheimer JS, Demant P, Lusis AJ, Peltonen L. Fine mapping of Hyplip1 and the human homolog, a potential locus for FCHL. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 12: 238-45. PMID 11252174 DOI: 10.1007/S003350010265  1
2001 Patel M, Dorman KS, Zhang YH, Huang BL, Arnold AP, Sinsheimer JS, Vilain E, McCabe ER. Primate DAX1, SRY, and SOX9: evolutionary stratification of sex-determination pathway. American Journal of Human Genetics. 68: 275-80. PMID 11112659 DOI: 10.1086/316932  1
2000 Dorman KS, Kaplan AH, Lange K, Sinsheimer JS. Mutation takes no vacation: Can structured treatment interruptions increase the risk of drug-resistant HIV-1? Journal of Acquired Immune Deficiency Syndromes. 25: 398-402. PMID 11141239 DOI: 10.1097/00042560-200012150-00003  1
2000 Chitnavis J, Sinsheimer JS, Suchard MA, Clipsham K, Carr AJ. End-stage coxarthrosis and gonarthrosis. Aetiology, clinical patterns and radiological features of idiopathic osteoarthritis Rheumatology. 39: 612-619. PMID 10888705 DOI: 10.1093/Rheumatology/39.6.612  1
2000 Loughlin J, Mustafa Z, Smith A, Irven C, Carr AJ, Clipsham K, Chitnavis J, Bloomfield VA, McCartney M, Cox O, Sinsheimer JS, Sykes B, Chapman KE. Linkage analysis of chromosome 2q in osteoarthritis. Rheumatology (Oxford, England). 39: 377-81. PMID 10817769 DOI: 10.1093/Rheumatology/39.4.377  1
2000 Mustafa Z, Chapman K, Irven C, Carr AJ, Clipsham K, Chitnavis J, Sinsheimer JS, Bloomfield VA, McCartney M, Cox O, Sykes B, Loughlin J. Linkage analysis of candidate genes as susceptibility loci for osteoarthritis-suggestive linkage of COL9A1 to female hip osteoarthritis. Rheumatology (Oxford, England). 39: 299-306. PMID 10788539 DOI: 10.1093/Rheumatology/39.3.299  1
2000 Loughlin J, Sinsheimer JS, Mustafa Z, Carr AJ, Clipsham K, Bloomfield VA, Chitnavis J, Bailey A, Sykes B, Chapman K. Association analysis of the vitamin D receptor gene, the type I collagen gene COL1A1, and the estrogen receptor gene in idiopathic osteoarthritis. The Journal of Rheumatology. 27: 779-84. PMID 10743824  1
2000 Sinsheimer JS, Blangero J, Lange K. Gamete-competition models American Journal of Human Genetics. 66: 1168-1172. PMID 10712230 DOI: 10.1086/302826  1
2000 Lusis AJ, Mouzeyan A, Choi J, Allayee H, Wang X, Sinsheimer J, Phan J, Castellani LW, Reue K, Davis RC. A locus conferring resistance to diet-induced hypercholesterolemia and atherosclerosis on mouse chromosome 2 Atherosclerosis. 151: 85. DOI: 10.1016/S0021-9150(00)80387-1  1
2000 Ekelund J, Hovatta I, Parker A, Varilo T, Paunio T, Martin R, Suhonen J, Terwilliger JD, Sinsheimer JS, Suvisaari J, Ellonen P, Maruti S, Juvorien H, Arajärvi R, Partonen T, et al. Fine-mapping of a 40 CM region on chromosome 1q in schizophrenia American Journal of Medical Genetics - Neuropsychiatric Genetics. 96: 461.  1
1999 Pérez C C, Vial C P, Dorman KS, Wang G, Abarca V K, Sinsheimer JS, Kaplan AH. Molecular epidemiology of the human immunodeficiency virus tipe 1 in Santiago, Chile | Epidemiología molecular del virus de inmunodeficiencia humana tipo 1 en Santiago, Chile Revista Medica De Chile. 127: 1294-1304. PMID 10835715  1
1999 Suchard MA, Yudkin P, Sinsheimer JS, Fowler GH. General practitioners' views on genetic screening for common diseases British Journal of General Practice. 49: 45-46. PMID 10622017  1
1999 Duncan EL, Brown MA, Sinsheimer J, Bell J, Carr AJ, Wordsworth BP, Wass JAH. Suggestive linkage of the parathyroid receptor type 1 to osteoporosis Journal of Bone and Mineral Research. 14: 1993-1999. PMID 10620056 DOI: 10.1359/Jbmr.1999.14.12.1993  1
1999 Bailey JN, Suchard MA, Smalley SL, Sinsheimer JS. Search for a gene x environment interaction: G x E hunt Genetic Epidemiology. 17: S491-S496. PMID 10597481 DOI: 10.1002/Gepi.1370170779  1
1999 Palmer CG, Bailey JN, Ramsey C, Cantwell D, Sinsheimer JS, Del'Homme M, McGough J, Woodward JA, Asarnow R, Asarnow J, Nelson S, Smalley SL. No evidence of linkage or linkage disequilibrium between DAT1 and attention deficit hyperactivity disorder in a large sample. Psychiatric Genetics. 9: 157-60. PMID 10551548 DOI: 10.1097/00041444-199909000-00009  1
1999 Chapman K, Mustafa Z, Irven C, Carr AJ, Clipsham K, Smith A, Chitnavis J, Sinsheimer JS, Bloomfield VA, McCartney M, Cox O, Cardon LR, Sykes B, Loughlin J. Osteoarthritis-susceptibility locus on chromosome 11q, detected by linkage. American Journal of Human Genetics. 65: 167-74. PMID 10364529 DOI: 10.1086/302465  1
1999 Plaeger S, Bermudez S, Mikyas Y, Harawa N, Dickover R, Mark D, Dillon M, Bryson YJ, Boyer PJ, Sinsheimer JS. Decreased CD8 cell-mediated viral suppression and other immunologic characteristics of women who transmit human immunodeficiency virus to their infants. The Journal of Infectious Diseases. 179: 1388-94. PMID 10228059 DOI: 10.1086/314746  1
1999 Suchard MA, Yudkin P, Sinsheimer JS. Are general practitioners willing and able to provide genetic services for common diseases? Journal of Genetic Counseling. 8: 301-311. DOI: 10.1023/A:1022934316284  1
1998 Schadt EE, Sinsheimer JS, Lange K. Computational advances in maximum likelihood methods for molecular phylogeny Genome Research. 8: 222-233. PMID 9521926 DOI: 10.1101/Gr.8.3.222  1
1998 Weeks DE, Sinsheimer JS, Genin E, Clerget-Darpoux F. Consanguinity and relative-pair methods for linkage analysis [7] (multiple letters) American Journal of Human Genetics. 62: 728-733. PMID 9497239 DOI: 10.1086/301742  1
1997 Chitnavis J, Sinsheimer JS, Clipsham K, Loughlin J, Sykes B, Burge PD, Carr AJ. Genetic influences in end-stage osteoarthritis. Sibling risks of hip and knee replacement for idiopathic osteoarthritis Journal of Bone and Joint Surgery - Series B. 79: 660-664. PMID 9250761 DOI: 10.1302/0301-620X.79B4.7437  1
1997 Sinsheimer JS, Lake JA, Little RJA. Inference for phylogenies under a hybrid parsimony method: Evolutionary- symmetric transversion parsimony Biometrics. 53: 23-38. PMID 9147592 DOI: 10.2307/2533094  1
1996 Sinsheimer JS, Lake JA, Little RJA. Bayesian hypothesis testing of four-taxon topologies using molecular sequence data Biometrics. 52: 193-210. PMID 8934592 DOI: 10.2307/2533156  1
1996 Lech WJ, Wang G, Yang YL, Chee Y, Dorman K, Mccrae D, Lazzeroni LC, Erickson JW, Sinsheimer JS, Kaplan AH. In vivo sequence diversity of the protease of human immunodeficiency virus type 1: Presence of protease inhibitor-resistant variants in untreated subjects Journal of Virology. 70: 2038-2043. PMID 8627733 DOI: 10.1128/Jvi.70.3.2038-2043.1996  1
1993 Addess KJ, Sinsheimer JS, Feigon J. Solution structure of a complex between [N-MeCys3,N-MeCys7]TANDEM and [d(GATATC)]2. Biochemistry. 32: 2498-508. PMID 8448108  1
1993 Lange K, Sinsheimer JS. Normal/independent distributions and their applications in robust regression Journal of Computational and Graphical Statistics. 2: 175-198. DOI: 10.1080/10618600.1993.10474606  1
1992 Lange K, Sinsheimer JS. Calculation of genetic identity coefficients Annals of Human Genetics. 56: 339-346. PMID 1492748 DOI: 10.1111/J.1469-1809.1992.Tb01162.X  1
1991 Macaya RF, Gilbert DE, Malek S, Sinsheimer JS, Feigon J. Structure and stability of X.G.C mismatches in the third strand of intramolecular triplexes. Science (New York, N.Y.). 254: 270-4. PMID 1925581 DOI: 10.1126/Science.1925581  1
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