Patrice Koehl - Publications

Affiliations: 
Applied Mathematics University of California, Davis, Davis, CA 
Area:
Applied Mathematics, General Biophysics, Biochemistry

112 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Koehl P, Delarue M, Orland H. Optimal transport at finite temperature. Physical Review. E. 100: 013310. PMID 31499816 DOI: 10.1103/PhysRevE.100.013310  1
2019 Koehl P, Delarue M, Orland H. Statistical Physics Approach to the Optimal Transport Problem. Physical Review Letters. 123: 040603. PMID 31491256 DOI: 10.1103/PhysRevLett.123.040603  1
2018 Koehl P, Orland H, Delarue M. Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments. Molecules (Basel, Switzerland). 24. PMID 30597916 DOI: 10.3390/molecules24010104  1
2018 Hu H, Ataka K, Menny A, Fourati Z, Sauguet L, Corringer PJ, Koehl P, Heberle J, Delarue M. Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 30541892 DOI: 10.1073/pnas.1813378116  1
2018 Koehl P, Delarue M. Coarse-grained dynamics of supramolecules: Conformational changes in outer shells of Dengue viruses. Progress in Biophysics and Molecular Biology. PMID 30273615 DOI: 10.1016/j.pbiomolbio.2018.09.004  1
2018 Delarue M, Koehl P. Combined approaches from physics, statistics, and computer science for protein structure prediction: (unity is strength)? F1000research. 7. PMID 30079234 DOI: 10.12688/f1000research.14870.1  1
2017 Delarue M, Koehl P, Orland H. Ab initio sampling of transition paths by conditioned Langevin dynamics. The Journal of Chemical Physics. 147: 152703. PMID 29055326 DOI: 10.1063/1.4985651  1
2017 Koehl P, Poitevin F, Navaza R, Delarue MH. The renormalization group and its applications to generating coarse-grained models of large biological molecular systems. Journal of Chemical Theory and Computation. PMID 28170254 DOI: 10.1021/acs.jctc.6b01136  0.88
2017 Li J, Koehl P. Geometric Potentials for Computational Protein Sequence Design. Methods in Molecular Biology (Clifton, N.J.). 1529: 125-138. PMID 27914048 DOI: 10.1007/978-1-4939-6637-0_5  0.36
2016 Hsieh YC, Poitevin F, Delarue M, Koehl P. Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids. Frontiers in Molecular Biosciences. 3: 85. PMID 28083537 DOI: 10.3389/fmolb.2016.00085  1
2016 Fourati Z, Ruza RR, Laverty D, Drège E, Delarue-Cochin S, Joseph D, Koehl P, Smart T, Delarue M. Barbiturates bind in the GLIC ion channel pore and cause inhibition by stabilizing a closed state. The Journal of Biological Chemistry. PMID 27986812 DOI: 10.1074/jbc.M116.766964  1
2015 Koehl P, Hass J. Landmark-free geometric methods in biological shape analysis. Journal of the Royal Society, Interface / the Royal Society. 12. PMID 26631331 DOI: 10.1098/rsif.2015.0795  1
2015 Fushing H, Hsueh CH, Heitkamp C, Matthews MA, Koehl P. Unravelling the geometry of data matrices: effects of water stress regimes on winemaking. Journal of the Royal Society, Interface / the Royal Society. 12: 20150753. PMID 26468072 DOI: 10.1098/rsif.2015.0753  1
2014 Carlsen M, Koehl P, Røgen P. On the importance of the distance measures used to train and test knowledge-based potentials for proteins. Plos One. 9: e109335. PMID 25411785 DOI: 10.1371/journal.pone.0109335  1
2014 Li J, Koehl P. 3D representations of amino acids-applications to protein sequence comparison and classification. Computational and Structural Biotechnology Journal. 11: 47-58. PMID 25379143 DOI: 10.1016/j.csbj.2014.09.001  1
2014 Fushing H, Chen C, Liu SY, Koehl P. Bootstrapping on undirected binary networks via statistical mechanics. Journal of Statistical Physics. 156: 823-842. PMID 25071295 DOI: 10.1007/s10955-014-1043-6  1
2014 Chen CP, Fushing H, Atwill R, Koehl P. biDCG: a new method for discovering global features of DNA microarray data via an iterative re-clustering procedure. Plos One. 9: e102445. PMID 25047553 DOI: 10.1371/journal.pone.0102445  1
2014 Xia F, Tong D, Yang L, Wang D, Hoi SC, Koehl P, Lu L. Identifying essential pairwise interactions in elastic network model using the alpha shape theory. Journal of Computational Chemistry. 35: 1111-21. PMID 24648309 DOI: 10.1002/jcc.23587  1
2014 Francis-Lyon P, Koehl P. Protein side-chain modeling with a protein-dependent optimized rotamer library. Proteins. 82: 2000-17. PMID 24623614 DOI: 10.1002/prot.24555  1
2014 Koehl P, Hass J. Automatic alignment of genus-zero surfaces. Ieee Transactions On Pattern Analysis and Machine Intelligence. 36: 466-78. PMID 24457504 DOI: 10.1109/TPAMI.2013.139  1
2014 Weinreb V, Li L, Chandrasekaran SN, Koehl P, Delarue M, Carter CW. Enhanced amino acid selection in fully evolved tryptophanyl-tRNA synthetase, relative to its urzyme, requires domain motion sensed by the D1 switch, a remote dynamic packing motif. The Journal of Biological Chemistry. 289: 4367-76. PMID 24394410 DOI: 10.1074/jbc.M113.538660  1
2014 Weiss DR, Koehl P. Morphing methods to visualize coarse-grained protein dynamics Methods in Molecular Biology. 1084: 271-282. PMID 24061927 DOI: 10.1007/978-1-62703-658-0-15  1
2014 Koehl P, Poitevin F, Orland H, Delarue M. Modified Poisson-Boltzmann equations for characterizing biomolecular solvation Journal of Theoretical and Computational Chemistry. 13. DOI: 10.1142/S021963361440001X  1
2013 Li J, Mach P, Koehl P. Measuring the shapes of macromolecules - and why it matters. Computational and Structural Biotechnology Journal. 8: e201309001. PMID 24688748 DOI: 10.5936/csbj.201309001  1
2013 Tsui A, Fenton D, Vuong P, Hass J, Koehl P, Amenta N, Coeurjolly D, DeCarli C, Carmichael O. Globally optimal cortical surface matching with exact landmark correspondence. Information Processing in Medical Imaging : Proceedings of the ... Conference. 23: 487-98. PMID 24683993 DOI: 10.1007/978-3-642-38868-2_41  1
2013 Kabasakal BV, Gae DD, Li J, Lagarias JC, Koehl P, Fisher AJ. His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics Archives of Biochemistry and Biophysics. 537: 233-242. PMID 23911721 DOI: 10.1016/j.abb.2013.07.021  1
2013 Mach P, Koehl P. Capturing protein sequence-structure specificity using computational sequence design. Proteins. 81: 1556-70. PMID 23609941 DOI: 10.1002/prot.24307  1
2013 Smaoui MR, Poitevin F, Delarue M, Koehl P, Orland H, Waldispühl J. Computational assembly of polymorphic amyloid fibrils reveals stable aggregates. Biophysical Journal. 104: 683-93. PMID 23442919 DOI: 10.1016/j.bpj.2012.12.037  1
2013 Fushing H, Wang H, Vanderwaal K, McCowan B, Koehl P. Multi-scale clustering by building a robust and self correcting ultrametric topology on data points. Plos One. 8: e56259. PMID 23424653 DOI: 10.1371/journal.pone.0056259  1
2013 Sauguet L, Poitevin F, Murail S, Van Renterghem C, Moraga-Cid G, Malherbe L, Thompson AW, Koehl P, Corringer PJ, Baaden M, Delarue M. Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels. The Embo Journal. 32: 728-41. PMID 23403925 DOI: 10.1038/emboj.2013.17  1
2013 Røgen P, Koehl P. Extracting knowledge from protein structure geometry. Proteins. 81: 841-51. PMID 23280479 DOI: 10.1002/prot.24242  1
2013 Mach P, Koehl P. An analytical method for computing atomic contact areas in biomolecules. Journal of Computational Chemistry. 34: 105-20. PMID 22965816 DOI: 10.1002/jcc.23111  1
2012 Koehl P. Fast recursive computation of 3D geometric moments from surface meshes. Ieee Transactions On Pattern Analysis and Machine Intelligence. 34: 2158-63. PMID 22997126 DOI: 10.1109/TPAMI.2012.23  1
2012 Gu S, Koehl P, Hass J, Amenta N. Surface-histogram: a new shape descriptor for protein-protein docking. Proteins. 80: 221-38. PMID 22072544 DOI: 10.1002/prot.23192  1
2011 Miao L, Qin H, Koehl P, Song J. Selective and specific ion binding on proteins at physiologically-relevant concentrations. Febs Letters. 585: 3126-32. PMID 21907714 DOI: 10.1016/j.febslet.2011.08.048  1
2011 Hu C, Koehl P, Max N. PackHelix: a tool for helix-sheet packing during protein structure prediction. Proteins. 79: 2828-43. PMID 21905109 DOI: 10.1002/prot.23108  1
2011 Koehl P, Orland H, Delarue M. Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling. The Journal of Chemical Physics. 135: 055104. PMID 21823735 DOI: 10.1063/1.3621831  1
2011 Mach P, Koehl P. Geometric measures of large biomolecules: surface, volume, and pockets. Journal of Computational Chemistry. 32: 3023-38. PMID 21823134 DOI: 10.1002/jcc.21884  1
2011 Shi X, Koehl P. Adaptive Skin Meshes Coarsening for Biomolecular Simulation. Computer Aided Geometric Design. 28: 307-320. PMID 21779137 DOI: 10.1016/j.cagd.2011.04.001  1
2011 Poitevin F, Orland H, Doniach S, Koehl P, Delarue M. AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models. Nucleic Acids Research. 39: W184-9. PMID 21665925 DOI: 10.1093/nar/gkr430  1
2011 di Luccio E, Koehl P. A quality metric for homology modeling: the H-factor. Bmc Bioinformatics. 12: 48. PMID 21291572 DOI: 10.1186/1471-2105-12-48  1
2010 Francis-Lyon P, Gu S, Hass J, Amenta N, Koehl P. Sampling the conformation of protein surface residues for flexible protein docking. Bmc Bioinformatics. 11: 575. PMID 21092317 DOI: 10.1186/1471-2105-11-575  1
2010 Hu C, Koehl P. Helix-sheet packing in proteins. Proteins. 78: 1736-47. PMID 20186972 DOI: 10.1002/prot.22688  1
2010 Koehl P, Delarue M. AQUASOL: An efficient solver for the dipolar Poisson-Boltzmann-Langevin equation. The Journal of Chemical Physics. 132: 064101. PMID 20151727 DOI: 10.1063/1.3298862  1
2009 Koehl P, Orland H, Delarue M. Computing ion solvation free energies using the dipolar Poisson model. The Journal of Physical Chemistry. B. 113: 5694-7. PMID 19385689 DOI: 10.1021/jp9010907  1
2009 Koehl P, Orland H, Delarue M. Beyond the Poisson-Boltzmann model: modeling biomolecule-water and water-water interactions. Physical Review Letters. 102: 087801. PMID 19257790 DOI: 10.1103/PhysRevLett.102.087801  1
2009 Laowanapiban P, Kapustina M, Vonrhein C, Delarue M, Koehl P, Carter CW. Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations. Proceedings of the National Academy of Sciences of the United States of America. 106: 1790-5. PMID 19174517 DOI: 10.1073/pnas.0812752106  1
2009 Le Q, Pollastri G, Koehl P. Structural alphabets for protein structure classification: a comparison study. Journal of Molecular Biology. 387: 431-50. PMID 19135454 DOI: 10.1016/j.jmb.2008.12.044  1
2009 Shi X, Koehl P. Adaptive surface meshes coarsening with guaranteed quality and topology Proceedings of Computer Graphics International Conference, Cgi. 53-61. DOI: 10.1145/1629739.1629746  1
2009 Koehl P, Orland H, Delarue M. Solvation of ion pairs: The poisson-langevin model 2009 International Conference On Signal Processing Systems, Icsps 2009. 917-923. DOI: 10.1109/ICSPS.2009.128  1
2009 Azuara C, Orland H, Bon M, Koehl P, Delarue M. Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics (Biophysical Journal 95, (5587-5605)) Biophysical Journal. 96: 2043. DOI: 10.1016/j.bpj.2009.02.001  1
2008 Azuara C, Orland H, Bon M, Koehl P, Delarue M. Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics. Biophysical Journal. 95: 5587-605. PMID 18820239 DOI: 10.1529/biophysj.108.131649  1
2008 Shi X, Koehl P. The geometry behind numerical solvers of the Poisson-Boltzmann equation Communications in Computational Physics. 3: 1032-1050.  1
2007 Chalmel F, Léveillard T, Jaillard C, Lardenois A, Berdugo N, Morel E, Koehl P, Lambrou G, Holmgren A, Sahel JA, Poch O. Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential. Bmc Molecular Biology. 8: 74. PMID 17764561 DOI: 10.1186/1471-2199-8-74  1
2007 Franklin J, Koehl P, Doniach S, Delarue M. MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape. Nucleic Acids Research. 35: W477-82. PMID 17545201 DOI: 10.1093/nar/gkm342  1
2007 Gu S, Poch O, Hamann B, Koehl P. A geometric representation of protein sequences Proceedings - 2007 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2007. 135-142. DOI: 10.1109/BIBM.2007.22  1
2006 Lindahl E, Azuara C, Koehl P, Delarue M. NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. Nucleic Acids Research. 34: W52-6. PMID 16845062 DOI: 10.1093/nar/gkl082  1
2006 Azuara C, Lindahl E, Koehl P, Orland H, Delarue M. PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics. Nucleic Acids Research. 34: W38-42. PMID 16845031 DOI: 10.1093/nar/gkl072  1
2006 McHale L, Tan X, Koehl P, Michelmore RW. Plant NBS-LRR proteins: adaptable guards. Genome Biology. 7: 212. PMID 16677430 DOI: 10.1186/gb-2006-7-4-212  1
2006 Koehl P. Electrostatics calculations: latest methodological advances. Current Opinion in Structural Biology. 16: 142-51. PMID 16540310 DOI: 10.1016/j.sbi.2006.03.001  1
2006 Zomorodian A, Guibas L, Koehl P. Geometric filtering of pairwise atomic interactions applied to the design of efficient statistical potentials Computer Aided Geometric Design. 23: 531-544. DOI: 10.1016/j.cagd.2006.03.002  1
2006 Koehl P. Protein structure classification Reviews in Computational Chemistry. 22: 1-55.  1
2005 Koehl P. Relaxed specificity in aromatic prenyltransferases. Nature Chemical Biology. 1: 71-2. PMID 16408001 DOI: 10.1038/nchembio0705-71  1
2005 Thompson JD, Koehl P, Ripp R, Poch O. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark. Proteins. 61: 127-36. PMID 16044462 DOI: 10.1002/prot.20527  1
2005 Thompson JD, Holbrook SR, Katoh K, Koehl P, Moras D, Westhof E, Poch O. MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. Nucleic Acids Research. 33: 4164-71. PMID 16043635 DOI: 10.1093/nar/gki735  1
2005 Kolodny R, Koehl P, Levitt M. Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. Journal of Molecular Biology. 346: 1173-88. PMID 15701525 DOI: 10.1016/j.jmb.2004.12.032  1
2005 Kolodny R, Guibas L, Levitt M, Koehl P. Inverse kinematics in biology: The protein loop closure problem International Journal of Robotics Research. 24: 151-163. DOI: 10.1177/0278364905050352  1
2004 Birck C, Damian L, Marty-Detraves C, Lougarre A, Schulze-Briese C, Koehl P, Fournier D, Paquereau L, Samama JP. A new lectin family with structure similarity to actinoporins revealed by the crystal structure of Xerocomus chrysenteron lectin XCL. Journal of Molecular Biology. 344: 1409-20. PMID 15561152 DOI: 10.1016/j.jmb.2004.10.007  1
2004 Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. The ASTRAL Compendium in 2004. Nucleic Acids Research. 32: D189-92. PMID 14681391 DOI: 10.1093/nar/gkh034  1
2004 Bryant R, Edelsbrunner H, Koehl P, Levitt M. The area derivative of a space-filling diagram Discrete and Computational Geometry. 32: 293-308. DOI: 10.1007/s00454-004-1099-1  1
2003 Edelsbrunner H, Koehl P. The weighted-volume derivative of a space-filling diagram. Proceedings of the National Academy of Sciences of the United States of America. 100: 2203-8. PMID 12601153 DOI: 10.1073/pnas.0537830100  1
2002 Kolodny R, Koehl P, Guibas L, Levitt M. Small libraries of protein fragments model native protein structures accurately. Journal of Molecular Biology. 323: 297-307. PMID 12381322 DOI: 10.1016/S0022-2836(02)00942-7  1
2002 Koehl P, Levitt M. Sequence variations within protein families are linearly related to structural variations. Journal of Molecular Biology. 323: 551-62. PMID 12381308 DOI: 10.1016/S0022-2836(02)00971-3  1
2002 Koehl P, Levitt M. Protein topology and stability define the space of allowed sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 1280-5. PMID 11805293 DOI: 10.1073/pnas.032405199  1
2002 Koehl P, Levitt M. Improved recognition of native-like protein structures using a family of designed sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 691-6. PMID 11782533 DOI: 10.1073/pnas.022408799  1
2002 Chandonia JM, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE. ASTRAL compendium enhancements. Nucleic Acids Research. 30: 260-3. PMID 11752310  1
2002 Agarwal PK, Guibas LJ, Edelsbrunner H, Erickson J, Isard M, Har-Peled S, Hershberger J, Jensen C, Kavraki L, Koehl P, Lin M, Manocha D, Metaxas D, Mirtich B, Mount D, et al. Algorithmic issues in modeling motion Acm Computing Surveys. 34: 550-572. DOI: 10.1145/592642.592647  1
2001 Wedekind JE, Trame CB, Dorywalska M, Koehl P, Raschke TM, McKee M, FitzGerald D, Collier RJ, McKay DB. Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity. Journal of Molecular Biology. 314: 823-37. PMID 11734000 DOI: 10.1006/jmbi.2001.5195  1
2001 Koehl P. Protein structure similarities Current Opinion in Structural Biology. 11: 348-353. PMID 11406386 DOI: 10.1016/S0959-440X(00)00214-1  1
2001 Rabier P, Kieffer B, Koehl P, Lefèvre JF. Fast measurement of heteronuclear relaxation: Frequency-domain analysis of NMR accordion spectroscopy Magnetic Resonance in Chemistry. 39: 447-456. DOI: 10.1002/mrc.870  1
2000 Samudrala R, Huang ES, Koehl P, Levitt M. Constructing side chains on near-native main chains for ab initio protein structure prediction. Protein Engineering. 13: 453-7. PMID 10906341  1
2000 Brenner SE, Koehl P, Levitt M. The ASTRAL compendium for protein structure and sequence analysis. Nucleic Acids Research. 28: 254-6. PMID 10592239  1
1999 Koehl P, Levitt M. De novo protein design. II. Plasticity in sequence space Journal of Molecular Biology. 293: 1183-1193. PMID 10547294 DOI: 10.1006/jmbi.1999.3212  1
1999 Koehl P, Levitt M. De novo protein design. I. In search of stability and specificity Journal of Molecular Biology. 293: 1161-1181. PMID 10547293 DOI: 10.1006/jmbi.1999.3211  1
1999 Koehl P, Levitt M. Structure-based conformational preferences of amino acids Proceedings of the National Academy of Sciences of the United States of America. 96: 12524-12529. PMID 10535955 DOI: 10.1073/pnas.96.22.12524  1
1999 Koehl P, Levitt M. Theory and simulation. Can theory challenge experiment? Current Opinion in Structural Biology. 9: 155-156. PMID 10465610 DOI: 10.1016/S0959-440X(99)80021-9  1
1999 Koehl P, Levitt M. A brighter future for protein structure prediction Nature Structural Biology. 6: 108-111. PMID 10048917 DOI: 10.1038/5794  1
1999 Koehl P. Linear prediction spectral analysis of NMR data Progress in Nuclear Magnetic Resonance Spectroscopy. 34: 257-299.  1
1998 Huang ES, Koehl P, Levitt M, Pappu RV, Ponder JW. Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods. Proteins. 33: 204-17. PMID 9779788 DOI: 10.1002/(SICI)1097-0134(19981101)33:2<204::AID-PROT5>3.0.CO;2-I  1
1998 Furuichi E, Koehl P. Influence of protein structure databases on the predictive power of statistical pair potentials Proteins: Structure, Function and Genetics. 31: 139-149. PMID 9593188 DOI: 10.1002/(SICI)1097-0134(19980501)31:2<139::AID-PROT4>3.0.CO;2-H  1
1998 Koehl P, Delarue M. Building protein lattice models using self-consistent mean field theory Journal of Chemical Physics. 108: 9540-9549.  1
1997 Koehl P, Delarue M. The native sequence determines sidechain packing in a protein, but does optimal sidechain packing determine the native sequence? Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 198-209. PMID 9390292  1
1997 Delarue M, Koehl P. The inverse protein folding problem: self consistent mean field optimisation of a structure specific mutation matrix Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 109-121. PMID 9390284  1
1996 Koehl P, Delarue M. Mean-field minimization methods for biological macromolecules Current Opinion in Structural Biology. 6: 222-226. PMID 8728655 DOI: 10.1016/S0959-440X(96)80078-9  1
1996 Sunada S, Go N, Koehl P. Calculation of nuclear magnetic resonance order parameters in proteins by normal mode analysis Journal of Chemical Physics. 104: 4768-4775.  1
1995 Delarue M, Koehl P. Atomic environment energies in proteins defined from statistics of accessible and contact surface areas Journal of Molecular Biology. 249: 675-690. PMID 7783220 DOI: 10.1006/jmbi.1995.0328  1
1995 Koehl P, Delarue M. A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling Nature Structural Biology. 2: 163-170. PMID 7538429 DOI: 10.1038/nsb0295-163  1
1994 Koehl P, Delarue M. Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy Journal of Molecular Biology. 239: 249-275. PMID 8196057 DOI: 10.1006/jmbi.1994.1366  1
1994 Koehl P, Delarue M. Polar and nonpolar atomic environments in the protein core: Implications for folding and binding Proteins: Structure, Function and Genetics. 20: 264-278. PMID 7892175 DOI: 10.1002/prot.340200307  1
1994 Mer G, Kellenberger C, Koehl P, Stote R, Sorokine O, Van Dorsselaer A, Luu B, Hietter H, Lefèvre JF. Solution structure of PMP-D2, a 35-residue peptide isolated from the insect Locusta migratoria Biochemistry. 33: 15397-15407. PMID 7803403  1
1994 Koehl P, Ling C, Lefevre JF. Statistics and Limits of Linear-Prediction Quantification of Magnetic Resonance Spectral Parameters Journal of Magnetic Resonance, Series A. 109: 32-40. DOI: 10.1006/jmra.1994.1131  1
1993 Bersch B, Koehl P, Nakatani Y, Ourisson G, Milon A. 1H nuclear magnetic resonance determination of the membrane-bound conformation of senktide, a highly selective neurokinin B agonist. Journal of Biomolecular Nmr. 3: 443-61. PMID 7691290 DOI: 10.1007/BF00176010  1
1993 Kieffer B, Koehl P, Plaue S, Lefèvre JF. Structural and dynamic studies of two antigenic loops from haemagglutinin: A relaxation matrix approach Journal of Biomolecular Nmr. 3: 91-112. PMID 7680587 DOI: 10.1007/BF00242478  1
1993 Koehl P, Delarue M. Environment energy and protein stability Protein Engineering, Design and Selection. 6: 128. DOI: 10.1093/protein/6.Supplement.128-b  1
1992 Koehl P, Lefèvre JF, Jardetzky O. Computing the geometry of a molecule in dihedral angle space using n.m.r.-derived constraints. A new algorithm based on optimal filtering. Journal of Molecular Biology. 223: 299-315. PMID 1731075 DOI: 10.1016/0022-2836(92)90732-Y  1
1992 Kieffer B, Koehl P, Lefèvre JF. Modelling the dynamics of an antigenic peptide using NMR relaxation data Biochimie. 74: 815-824. PMID 1467341 DOI: 10.1016/0300-9084(92)90064-L  1
1990 Burnouf D, Koehl P, Fuchs RP. Position of a single acetylaminofluorene adduct within a mutational hot spot is critical for the related mutagenic event Basic Life Sciences. 52: 277-287. PMID 2183773  1
1990 Koehl P, Lefèvre JF. The reconstruction of the relaxation matrix from an incomplete set of nuclear overhauser effects Journal of Magnetic Resonance (1969). 86: 565-583. DOI: 10.1016/0022-2364(90)90034-7  1
1989 Koehl P, Burnouf D, Fuchs RPP. Construction of plasmids containing a unique acetylaminofluorene adduct located within a mutation hot spot. A new probe for frameshift mutagenesis Journal of Molecular Biology. 207: 355-364. PMID 2754729 DOI: 10.1016/0022-2836(89)90259-3  1
1989 Burnouf D, Koehl P, Fuchs RPP. Single adduct mutagenesis: Strong effect of the position of a single acetylaminofluorene adduct within a mutation hot spot Proceedings of the National Academy of Sciences of the United States of America. 86: 4147-4151. PMID 2657743  1
1989 Koehl P, Valladier P, Lefèvre JF, Fuchs RPP. Strong structural effect of the position of a single acetylaminofluorene adduct within a mutation hot spot Nucleic Acids Research. 17: 9531-9541. PMID 2602135 DOI: 10.1093/nar/17.23.9531  1
1986 Chatterjee A, Koehl P, Magee JL. Theoretical consideration of the chemical pathways for radiation-induced strand breaks Advances in Space Research. 6: 97-105. PMID 11537252 DOI: 10.1016/0273-1177(86)90282-6  1
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