| Year |
Citation |
Score |
| 2023 |
Lutgring JD, Kent AG, Bowers JR, Jasso-Selles DE, Albrecht V, Stevens VA, Pfeiffer A, Barnes R, Engelthaler DM, Johnson JK, Gargis AS, Rasheed JK, Limbago BM, Elkins CA, Karlsson M, et al. Comparison of carbapenem-susceptible and carbapenem-resistant at nine sites in the USA, 2013-2016: a resource for antimicrobial resistance investigators. Microbial Genomics. 9. PMID 37987646 DOI: 10.1099/mgen.0.001119 |
0.345 |
|
| 2023 |
Li X, Muñoz JF, Gade L, Argimon S, Bougnoux ME, Bowers JR, Chow NA, Cuesta I, Farrer RA, Maufrais C, Monroy-Nieto J, Pradhan D, Uehling J, Vu D, Yeats CA, ... ... Engelthaler DM, et al. Comparing genomic variant identification protocols for . Microbial Genomics. 9. PMID 37043380 DOI: 10.1099/mgen.0.000979 |
0.301 |
|
| 2023 |
Highlander SK, Wood JM, Gillece JD, Folkerts M, Fofanov V, Furstenau T, Singh NK, Guan L, Seuylemezian A, Benardini JN, Engelthaler DM, Venkateswaran K, Keim PS. Multi-faceted metagenomic analysis of spacecraft associated surfaces reveal planetary protection relevant microbial composition. Plos One. 18: e0282428. PMID 36947490 DOI: 10.1371/journal.pone.0282428 |
0.438 |
|
| 2022 |
Monroy-Nieto J, Bowers JR, Montfort P, Adame G, Taverna CG, Yaglom H, Sykes JE, Brady S, Mochon AB, Meyer W, Komatsu K, Engelthaler DM. Phylogenomic Placement of American Southwest-Associated Clinical and Veterinary Isolates Expands Evidence for Distinct VGVI. Microorganisms. 10. PMID 36014098 DOI: 10.3390/microorganisms10081681 |
0.342 |
|
| 2022 |
Naicker SD, Firacative C, van Schalkwyk E, Maphanga TG, Monroy-Nieto J, Bowers JR, Engelthaler DM, Meyer W, Govender NP. Molecular type distribution and fluconazole susceptibility of clinical Cryptococcus gattii isolates from South African laboratory-based surveillance, 2005-2013. Plos Neglected Tropical Diseases. 16: e0010448. PMID 35767529 DOI: 10.1371/journal.pntd.0010448 |
0.311 |
|
| 2021 |
Ridenour CL, Cocking J, Poidmore S, Erickson D, Brock B, Valentine M, Roe CC, Young SJ, Henke JA, Hung KY, Wittie J, Stefanakos E, Sumner C, Ruedas M, Raman V, ... ... Engelthaler DM, et al. St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event. Frontiers in Genetics. 12: 667895. PMID 34168675 DOI: 10.3389/fgene.2021.667895 |
0.604 |
|
| 2021 |
Naicker SD, Magobo RE, Maphanga TG, Firacative C, van Schalkwyk E, Monroy-Nieto J, Bowers J, Engelthaler DM, Shuping L, Meyer W, Govender NP. Genotype, Antifungal Susceptibility, and Virulence of Clinical South African Strains from National Surveillance, 2005-2009. Journal of Fungi (Basel, Switzerland). 7. PMID 33925754 DOI: 10.3390/jof7050338 |
0.31 |
|
| 2020 |
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity. F1000research. 9: 657. PMID 33500774 DOI: 10.12688/F1000Research.24751.1 |
0.517 |
|
| 2020 |
Roe C, Williamson CHD, Vazquez AJ, Kyger K, Valentine M, Bowers JR, Phillips PD, Harrison V, Driebe E, Engelthaler DM, Sahl JW. Bacterial Genome Wide Association Studies (bGWAS) and Transcriptomics Identifies Cryptic Antimicrobial Resistance Mechanisms in . Frontiers in Public Health. 8: 451. PMID 33014966 DOI: 10.3389/Fpubh.2020.00451 |
0.449 |
|
| 2020 |
Ladner JT, Larsen BB, Bowers JR, Hepp CM, Bolyen E, Folkerts M, Sheridan K, Pfeiffer A, Yaglom H, Lemmer D, Sahl JW, Kaelin EA, Maqsood R, Bokulich NA, Quirk G, ... ... Engelthaler DM, et al. An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona. Mbio. 11. PMID 32887735 DOI: 10.1128/Mbio.02107-20 |
0.565 |
|
| 2020 |
Roe C, Stegger M, Lilje B, Johannesen TB, Ng KL, Sieber RN, Driebe E, Engelthaler DM, Andersen PS. Genomic analyses of clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia. Microbial Genomics. PMID 32667872 DOI: 10.1099/mgen.0.000403 |
0.34 |
|
| 2020 |
Bowers JR, Monroy-Nieto J, Gade L, Travis J, Refojo N, Abrantes R, Santander J, French C, Dignani MC, Hevia AI, Roe CC, Lemmer D, Lockhart SR, Chiller T, Litvintseva AP, ... ... Engelthaler DM, et al. Rhizopus microsporus Infections Associated with Surgical Procedures, Argentina, 2006-2014. Emerging Infectious Diseases. 26: 937-944. PMID 32310081 DOI: 10.3201/Eid2605.191045 |
0.422 |
|
| 2020 |
Hiippala K, Kainulainen V, Suutarinen M, Heini T, Bowers JR, Jasso-Selles D, Lemmer D, Valentine M, Barnes R, Engelthaler DM, Satokari R. Isolation of Anti-Inflammatory and Epithelium Reinforcing and Spp. from A Healthy Fecal Donor. Nutrients. 12. PMID 32230951 DOI: 10.3390/Nu12040935 |
0.315 |
|
| 2020 |
Ezewudo M, Borens A, Chiner-Oms Á, Miotto P, Chindelevitch L, Starks AM, Hanna D, Liwski R, Zignol M, Gilpin C, Niemann S, Kohl TA, Warren RM, Crook D, Gagneux S, ... ... Engelthaler DM, et al. Author Correction: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase. Scientific Reports. 10: 3531. PMID 32081980 DOI: 10.1038/S41598-020-58955-Y |
0.369 |
|
| 2020 |
Bolyen E, Dillon MR, Bokulich NA, Ladner JT, Larsen BB, Hepp CM, Lemmer D, Sahl JW, Sanchez A, Holdgraf C, Sewell C, Choudhury AG, Stachurski J, McKay M, Engelthaler DM, et al. Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity F1000research. 9: 657. DOI: 10.12688/f1000research.24751.1 |
0.454 |
|
| 2019 |
Engelthaler DM, Streicher EM, Kelley EJ, Allender CJ, Wiggins K, Jimenez D, Lemmer D, Vittinghoff E, Theron G, Sirgel FA, Warren RM, Metcalfe JZ. Minority Genotypic Populations as an Indicator of Subsequent Phenotypic Resistance. American Journal of Respiratory Cell and Molecular Biology. 61: 789-791. PMID 31774334 DOI: 10.1165/Rcmb.2019-0178Le |
0.322 |
|
| 2019 |
Engelthaler DM, Casadevall A. On the Emergence of Cryptococcus gattii in the Pacific Northwest: Ballast Tanks, Tsunamis, and Black Swans. Mbio. 10. PMID 31575770 DOI: 10.1128/Mbio.02193-19 |
0.303 |
|
| 2019 |
Singh A, Masih A, Monroy-Nieto J, Kumar Singh P, Bowers J, Travis J, Khurana A, Engelthaler DM, Meis JF, Chowdhary A. A unique multidrug-resistant clonal Trichophyton population distinct from Trichophytonmentagrophytes / Trichophytoninterdigitale complex causing an ongoing alarming dermatophytosis outbreak in India: genomic insights and resistance profile. Fungal Genetics and Biology : Fg & B. 103266. PMID 31491507 DOI: 10.1016/J.Fgb.2019.103266 |
0.446 |
|
| 2019 |
Wang Q, Modongo C, Allender C, Engelthaler DM, Warren RM, Zetola NM, Shin SS. Utility of targeted, amplicon-based deep sequencing to detect resistance to first-line tuberculosis drugs in Botswana. Antimicrobial Agents and Chemotherapy. PMID 31405858 DOI: 10.1128/Aac.00982-19 |
0.342 |
|
| 2019 |
Schmertmann LJ, Danesi P, Monroy-Nieto J, Bowers J, Engelthaler DM, Malik R, Meyer W, Krockenberger MB. Jet-Setting Koalas Spread Cryptococcus gattii VGII in Australia. Msphere. 4. PMID 31167945 DOI: 10.1128/mSphere.00216-19 |
0.316 |
|
| 2019 |
de Vos M, Ley SD, Wiggins KB, Derendinger B, Dippenaar A, Grobbelaar M, Reuter A, Dolby T, Burns S, Schito M, Engelthaler DM, Metcalfe J, Theron G, van Rie A, Posey J, et al. Bedaquiline Microheteroresistance after Cessation of Tuberculosis Treatment. The New England Journal of Medicine. 380: 2178-2180. PMID 31141643 DOI: 10.1056/Nejmc1815121 |
0.315 |
|
| 2019 |
Colman RE, Mace A, Seifert M, Hetzel J, Mshaiel H, Suresh A, Lemmer D, Engelthaler DM, Catanzaro DG, Young AG, Denkinger CM, Rodwell TC. Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation. Plos Medicine. 16: e1002794. PMID 31039166 DOI: 10.1371/Journal.Pmed.1002794 |
0.375 |
|
| 2019 |
Birdsell DN, Yaglom H, Rodriguez E, Engelthaler DM, Maurer M, Gaither M, Vinocur J, Weiss J, Terriquez J, Komatsu K, Ormsby ME, Gebhardt M, Solomon C, Nienstadt L, Williamson CHD, et al. Phylogenetic Analysis of Francisella tularensis Group A.II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015-2017. Emerging Infectious Diseases. 25: 944-946. PMID 31002053 DOI: 10.3201/Eid2505.180363 |
0.484 |
|
| 2019 |
Oltean HN, Etienne KA, Roe CC, Gade L, McCotter OZ, Engelthaler DM, Litvintseva AP. Utility of Whole-Genome Sequencing to Ascertain Locally Acquired Cases of Coccidioidomycosis, Washington, USA. Emerging Infectious Diseases. 25: 501-506. PMID 30789132 DOI: 10.3201/Eid2503.181155 |
0.419 |
|
| 2019 |
Barker BM, Rajan S, Teixeira MM, Sewnarine M, Roe C, Engelthaler DM, Galgiani JN. Coccidioidal Meningitis in New York traced to Texas by Fungal Genomic Analysis. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 30715178 DOI: 10.1093/Cid/Ciz052 |
0.386 |
|
| 2019 |
McCotter OZ, Benedict K, Engelthaler DM, Komatsu K, Lucas KD, Mohle-Boetani JC, Oltean H, Vugia D, Chiller TM, Sondermeyer Cooksey GL, Nguyen A, Roe CC, Wheeler C, Sunenshine R. Update on the Epidemiology of coccidioidomycosis in the United States. Medical Mycology. 57: S30-S40. PMID 30690599 DOI: 10.1093/Mmy/Myy095 |
0.302 |
|
| 2019 |
Bowers JR, Valentine M, Harrison V, Fofanov VY, Gillece J, Delisle J, Patton B, Schupp J, Sheridan K, Lemmer D, Ostdiek S, Bains HK, Heim J, Sylvester T, Prasai S, ... ... Engelthaler DM, et al. Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role. Mbio. 10. PMID 30670612 DOI: 10.1128/Mbio.02262-18 |
0.502 |
|
| 2019 |
Zhang S, Li S, Gu W, den Bakker H, Boxrud D, Taylor A, Roe C, Driebe E, Engelthaler DM, Allard M, Brown E, McDermott P, Zhao S, Bruce BB, Trees E, et al. Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States. Emerging Infectious Diseases. 25: 82-91. PMID 30561314 DOI: 10.3201/Eid2501.180835 |
0.42 |
|
| 2018 |
Hepp CM, Cocking JH, Valentine M, Young SJ, Damian D, Samuels-Crow KE, Sheridan K, Fofanov VY, Furstenau TN, Busch JD, Erickson DE, Lancione RC, Smith K, Will J, Townsend J, ... ... Engelthaler DM, et al. Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest. Plos One. 13: e0205801. PMID 30475820 DOI: 10.1371/Journal.Pone.0205801 |
0.522 |
|
| 2018 |
Ezewudo M, Borens A, Chiner-Oms Á, Miotto P, Chindelevitch L, Starks AM, Hanna D, Liwski R, Zignol M, Gilpin C, Niemann S, Kohl TA, Warren RM, Crook D, Gagneux S, ... ... Engelthaler DM, et al. Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase. Scientific Reports. 8: 15382. PMID 30337678 DOI: 10.1038/S41598-018-33731-1 |
0.419 |
|
| 2018 |
Lockhart SR, Roe CC, Engelthaler DM. Timing the Origin of Cryptococcus gattii sensu stricto, Southeastern United States. Emerging Infectious Diseases. 24: 2095-2097. PMID 30334716 DOI: 10.3201/Eid2411.180975 |
0.351 |
|
| 2018 |
Garner E, Chen C, Xia K, Bowers J, Engelthaler D, McLain J, Edwards MA, Pruden A. Metagenomic characterization of antibiotic resistance genes in full-scale reclaimed water distribution systems and corresponding potable systems. Environmental Science & Technology. PMID 29741366 DOI: 10.1021/Acs.Est.7B05419 |
0.304 |
|
| 2018 |
Bowers JR, Driebe EM, Albrecht V, McDougal LK, Granade M, Roe CC, Lemmer D, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis. Msphere. 3. PMID 29720527 DOI: 10.1128/mSphere.00464-17 |
0.511 |
|
| 2018 |
Vu K, Thompson GR, Roe CC, Sykes JE, Dreibe EM, Lockhart SR, Meyer W, Engelthaler DM, Gelli A. Flucytosine resistance in Cryptococcus gattii is indirectly mediated by the FCY2-FCY1-FUR1 pathway. Medical Mycology. PMID 29554336 DOI: 10.1093/Mmy/Myx135 |
0.429 |
|
| 2018 |
Bowers JR, Parise KL, Kelley EJ, Lemmer D, Schupp JM, Driebe EM, Engelthaler DM, Keim P, Barker BM. Direct detection of Coccidioides from Arizona soils using CocciENV, a highly sensitive and specific real-time PCR assay. Medical Mycology. PMID 29534236 DOI: 10.1093/Mmy/Myy007 |
0.477 |
|
| 2018 |
Chung VM, Borazanci EH, Jameson GS, Evans R, Downes M, Truitt ML, Patel H, Lowy AM, Roe D, Ansaldo K, Barrett MT, Korn RL, Caldwell L, Slethaug G, Hultsch R, ... ... Engelthaler D, et al. A SU2C catalyst randomized phase II trial of pembrolizumab with or without paricalcitol in patients with stage IV pancreatic cancer who have been placed in best possible response. Journal of Clinical Oncology. 36: TPS4154-TPS4154. DOI: 10.1200/Jco.2018.36.15_Suppl.Tps4154 |
0.538 |
|
| 2017 |
Miotto P, Tessema B, Tagliani E, Chindelevitch L, Starks AM, Emerson C, Hanna D, Kim PS, Liwski R, Zignol M, Gilpin C, Niemann S, Denkinger CM, Fleming J, Warren RM, ... ... Engelthaler DM, et al. A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis. The European Respiratory Journal. 50. PMID 29284687 DOI: 10.1183/13993003.01354-2017 |
0.343 |
|
| 2017 |
Metcalfe JZ, Streicher E, Theron G, Colman RE, Penaloza R, Allender C, Lemmer D, Warren RM, Engelthaler DM. Mycobacterium tuberculosis subculture results in loss of potentially clinically relevant heteroresistance. Antimicrobial Agents and Chemotherapy. PMID 28893776 DOI: 10.1128/Aac.00888-17 |
0.358 |
|
| 2017 |
Rhodes J, Desjardins CA, Sykes SM, Beale MA, Vanhove M, Sakthikumar S, Chen Y, Gujja S, Saif S, Chowdhary A, Lawson DJ, Ponzio V, Colombo AL, Meyer W, Engelthaler DM, et al. Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level. Genetics. PMID 28679543 DOI: 10.1534/Genetics.117.203836 |
0.433 |
|
| 2017 |
Metcalfe JZ, Streicher E, Theron G, Colman RE, Allender C, Lemmer D, Warren R, Engelthaler DM. Cryptic Micro-heteroresistance Explains M. tuberculosis Phenotypic Resistance. American Journal of Respiratory and Critical Care Medicine. PMID 28614668 DOI: 10.1164/Rccm.201703-0556Oc |
0.359 |
|
| 2017 |
Ferreira-Paim K, Andrade-Silva L, Fonseca FM, Ferreira TB, Mora DJ, Andrade-Silva J, Khan A, Dao A, Reis EC, Almeida MT, Maltos A, Junior VR, Trilles L, Rickerts V, Chindamporn A, ... ... Engelthaler DM, et al. MLST-Based Population Genetic Analysis in a Global Context Reveals Clonality amongst Cryptococcus neoformans var. grubii VNI Isolates from HIV Patients in Southeastern Brazil. Plos Neglected Tropical Diseases. 11: e0005223. PMID 28099434 DOI: 10.1371/Journal.Pntd.0005223 |
0.394 |
|
| 2016 |
Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CH, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, et al. NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. Microbial Genomics. 2: e000074. PMID 28348869 DOI: 10.1099/mgen.0.000074 |
0.487 |
|
| 2016 |
Roe CC, Horn KS, Driebe EM, Bowers J, Terriquez JA, Keim P, Engelthaler DM. Whole genome SNP typing to investigate methicillin-resistant Staphylococcus aureus carriage in a health-care provider as the source of multiple surgical site infections. Hereditas. 153: 11. PMID 28096773 DOI: 10.1186/S41065-016-0017-X |
0.579 |
|
| 2016 |
Dolinger DL, Colman RE, Engelthaler DM, Rodwell TC. Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future. International Journal of Mycobacteriology. 5: S27-S28. PMID 28043592 DOI: 10.1016/J.Ijmyco.2016.09.021 |
0.372 |
|
| 2016 |
Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler DM, Keim P. KlebSeq: A Diagnostic Tool for Surveillance, Detection, and Monitoring of Klebsiella pneumoniae. Journal of Clinical Microbiology. PMID 27510832 DOI: 10.1128/Jcm.00927-16 |
0.704 |
|
| 2016 |
Firacative C, Roe CC, Malik R, Ferreira-Paim K, Escandón P, Sykes JE, Castañón-Olivares LR, Contreras-Peres C, Samayoa B, Sorrell TC, Castañeda E, Lockhart SR, Engelthaler DM, Meyer W. MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent Serotype Specific Sub-populations and Distant Ancestors. Plos Neglected Tropical Diseases. 10: e0004861. PMID 27494185 DOI: 10.1371/Journal.Pntd.0004861 |
0.451 |
|
| 2016 |
Colman RE, Anderson J, Lemmer D, Lehmkuhl E, Georghiou SB, Heaton H, Wiggins K, Gillece JD, Schupp JM, Catanzaro DG, Crudu V, Cohen T, Rodwell TC, Engelthaler DM. Rapid Drug Susceptibility Testing of Drug Resistant Mycobacterium tuberculosis Directly from Clinical Samples using Amplicon Sequencing: A Proof of Concept Study. Journal of Clinical Microbiology. PMID 27225403 DOI: 10.1128/Jcm.00535-16 |
0.365 |
|
| 2016 |
Lockhart SR, Roe CC, Engelthaler DM. Whole-Genome Analysis of Cryptococcus gattii, Southeastern United States. Emerging Infectious Diseases. 22: 1098-1101. PMID 27191335 DOI: 10.3201/Eid2206.151455 |
0.308 |
|
| 2016 |
Engelthaler DM, Roe CC, Hepp CM, Teixeira M, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, Thompson GR, Chiller T, Barker B, Keim P, et al. Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever. Mbio. 7. PMID 27118594 DOI: 10.1128/Mbio.00550-16 |
0.524 |
|
| 2016 |
Engelthaler DM, Valentine M, Bowers J, Pistole J, Driebe EM, Terriquez J, Nienstadt L, Carroll M, Schumacher M, Ormsby ME, Brady S, Livar E, Yazzie D, Waddell V, Peoples M, et al. Hypervirulent emm59 Clone in Invasive Group A Streptococcus Outbreak, Southwestern United States. Emerging Infectious Diseases. 22: 734-8. PMID 26982330 DOI: 10.3201/Eid2204.151582 |
0.538 |
|
| 2015 |
Roume H, Heintz-Buschart A, Muller EEL, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, Gillece JD, Hicks ND, Engelthaler DM, Sauter T, Keim PS, et al. Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. Npj Biofilms and Microbiomes. 1: 15007. PMID 28721231 DOI: 10.1038/npjbiofilms.2015.7 |
0.34 |
|
| 2015 |
Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA. Mapping the Evolution of Hypervirulent Klebsiella pneumoniae. Mbio. 6: e00630. PMID 26199326 DOI: 10.1128/Mbio.00630-15 |
0.587 |
|
| 2015 |
Bowers JR, Kitchel B, Driebe EM, MacCannell DR, Roe C, Lemmer D, de Man T, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic. Plos One. 10: e0133727. PMID 26196384 DOI: 10.1371/Journal.Pone.0133727 |
0.585 |
|
| 2015 |
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, ... Engelthaler DM, et al. Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus. Plos One. 10: e0130955. PMID 26161978 DOI: 10.1371/Journal.Pone.0130955 |
0.721 |
|
| 2015 |
Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing. Plos One. 10: e0126626. PMID 25970423 DOI: 10.1371/Journal.Pone.0126626 |
0.55 |
|
| 2015 |
Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI, Engelthaler DM. Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis. Journal of Clinical Microbiology. 53: 212-8. PMID 25378576 DOI: 10.1128/Jcm.02332-14 |
0.577 |
|
| 2015 |
Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, Ralston C, Roe C, Barker BM, Goldoft M, Keim P, Wohrle R, Thompson GR, Engelthaler DM, Brandt ME, et al. Valley fever: finding new places for an old disease: coccidioides immitis found in Washington State soil associated with recent human infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 60: e1-3. PMID 25165087 DOI: 10.1093/Cid/Ciu681 |
0.513 |
|
| 2015 |
Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. Detection of low-level mixed-population drug resistance in Mycobacterium tuberculosis using high fidelity amplicon sequencing Plos One. 10. DOI: 10.1371/journal.pone.0126626 |
0.432 |
|
| 2015 |
Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA. Mapping the evolution of hypervirulent Klebsiella pneumoniae Mbio. 6. DOI: 10.1128/mBio.00630-15 |
0.339 |
|
| 2015 |
Firacative C, Ferreira-Paim K, Trilles L, Engelthaler DM, Meyer W. Australia in the global picture of the molecular epidemiology of Cryptococcus gattii molecular type VGII Microbiology Australia. 36: 67. DOI: 10.1071/Ma15023 |
0.353 |
|
| 2014 |
Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing. Plos One. 9: e110915. PMID 25365329 DOI: 10.1371/Journal.Pone.0110915 |
0.56 |
|
| 2014 |
Wendt JM, Kaul D, Limbago BM, Ramesh M, Cohle S, Denison AM, Driebe EM, Rasheed JK, Zaki SR, Blau DM, Paddock CD, McDougal LK, Engelthaler DM, Keim PS, Roe CC, et al. Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 14: 2633-9. PMID 25250717 DOI: 10.1111/Ajt.12898 |
0.513 |
|
| 2014 |
Engelthaler DM, Hicks ND, Gillece JD, Roe CC, Schupp JM, Driebe EM, Gilgado F, Carriconde F, Trilles L, Firacative C, Ngamskulrungroj P, Castañeda E, Lazera Mdos S, Melhem MS, Pérez-Bercoff A, et al. Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. Mbio. 5: e01464-14. PMID 25028429 DOI: 10.1128/Mbio.01464-14 |
0.561 |
|
| 2014 |
Litvintseva AP, Hurst S, Gade L, Frace MA, Hilsabeck R, Schupp JM, Gillece JD, Roe C, Smith D, Keim P, Lockhart SR, Changayil S, Weil MR, MacCannell DR, Brandt ME, ... Engelthaler DM, et al. Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Journal of Clinical Microbiology. 52: 3216-22. PMID 24951807 DOI: 10.1128/Jcm.00936-14 |
0.584 |
|
| 2014 |
Kelley EJ, Driebe EM, Etienne K, Brandt ME, Schupp JM, Gillece JD, Trujillo JS, Lockhart SR, Deak E, Keim PS, Engelthaler DM. Real-time PCR assays for genotyping of Cryptococcus gattii in North America. Bmc Microbiology. 14: 125. PMID 24886039 DOI: 10.1186/1471-2180-14-125 |
0.556 |
|
| 2013 |
Stegger M, Driebe EM, Roe C, Lemmer D, Bowers JR, Engelthaler DM, Keim P, Andersen PS. Genome Sequence of Staphylococcus aureus Strain CA-347, a USA600 Methicillin-Resistant Isolate. Genome Announcements. 1. PMID 23887918 DOI: 10.1128/Genomea.00517-13 |
0.571 |
|
| 2013 |
Engelthaler DM, Kelley E, Driebe EM, Bowers J, Eberhard CF, Trujillo J, Decruyenaere F, Schupp JM, Mossong J, Keim P, Even J. Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries. Bmc Infectious Diseases. 13: 339. PMID 23879266 DOI: 10.1186/1471-2334-13-339 |
0.586 |
|
| 2013 |
Sarovich DS, Colman RE, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM. Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. Journal of Medical Microbiology. 62: 1295-300. PMID 23741021 DOI: 10.1099/Jmm.0.052381-0 |
0.525 |
|
| 2013 |
Sahl JW, Gillece JD, Schupp JM, Waddell VG, Driebe EM, Engelthaler DM, Keim P. Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter. Plos One. 8: e54287. PMID 23365658 DOI: 10.1371/Journal.Pone.0054287 |
0.563 |
|
| 2012 |
Neblett Fanfair R, Benedict K, Bos J, Bennett SD, Lo YC, Adebanjo T, Etienne K, Deak E, Derado G, Shieh WJ, Drew C, Zaki S, Sugerman D, Gade L, Thompson EH, ... ... Engelthaler DM, et al. Necrotizing cutaneous mucormycosis after a tornado in Joplin, Missouri, in 2011. The New England Journal of Medicine. 367: 2214-25. PMID 23215557 DOI: 10.1056/Nejmoa1204781 |
0.362 |
|
| 2012 |
Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, ... Engelthaler DM, et al. Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. Plos One. 7: e49989. PMID 23209631 DOI: 10.1371/Journal.Pone.0049989 |
0.601 |
|
| 2012 |
Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P. Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant. Journal of Bacteriology. 194: 6670-1. PMID 23144412 DOI: 10.1128/Jb.01765-12 |
0.505 |
|
| 2012 |
Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, et al. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology. 50: 2059-62. PMID 22442327 DOI: 10.1128/Jcm.06737-11 |
0.663 |
|
| 2012 |
Sarovich DS, Price EP, Von Schulze AT, Cook JM, Mayo M, Watson LM, Richardson L, Seymour ML, Tuanyok A, Engelthaler DM, Pearson T, Peacock SJ, Currie BJ, Keim P, Wagner DM. Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. Plos One. 7: e30789. PMID 22363490 DOI: 10.1371/Journal.Pone.0030789 |
0.701 |
|
| 2012 |
Bowers JR, Driebe EM, Nibecker JL, Wojack BR, Sarovich DS, Wong AH, Brzoska PM, Hubert N, Knadler A, Watson LM, Wagner DM, Furtado MR, Saubolle M, Engelthaler DM, Keim PS. Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona. Bmc Microbiology. 12: 12. PMID 22251616 DOI: 10.1186/1471-2180-12-12 |
0.536 |
|
| 2012 |
Richardson LJ, Kaestli M, Mayo M, Bowers JR, Tuanyok A, Schupp J, Engelthaler D, Wagner DM, Keim PS, Currie BJ. Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens. Journal of Microbiological Methods. 88: 179-81. PMID 22108495 DOI: 10.1016/J.Mimet.2011.10.023 |
0.441 |
|
| 2011 |
Hoopes JD, Driebe EM, Kelley E, Engelthaler DM, Keim PS, Perelson AS, Rong L, Went GT, Nguyen JT. Triple combination antiviral drug (TCAD) composed of amantadine, oseltamivir, and ribavirin impedes the selection of drug-resistant influenza A virus. Plos One. 6: e29778. PMID 22220216 DOI: 10.1371/Journal.Pone.0029778 |
0.491 |
|
| 2011 |
Liguori AP, Warrington SD, Ginther JL, Pearson T, Bowers J, Glass MB, Mayo M, Wuthiekanun V, Engelthaler D, Peacock SJ, Currie BJ, Wagner DM, Keim P, Tuanyok A. Diversity of 16S-23S rDNA internal transcribed spacer (ITS) reveals phylogenetic relationships in Burkholderia pseudomallei and its near-neighbors. Plos One. 6: e29323. PMID 22195045 DOI: 10.1371/Journal.Pone.0029323 |
0.683 |
|
| 2011 |
Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, DeBess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR. Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity. Plos One. 6: e28550. PMID 22163313 DOI: 10.1371/Journal.Pone.0028550 |
0.729 |
|
| 2011 |
Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". Mbio. 2: e00245-11. PMID 22045990 DOI: 10.1128/Mbio.00245-11 |
0.696 |
|
| 2011 |
Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, et al. Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. Plos Neglected Tropical Diseases. 5: e1347. PMID 22028940 DOI: 10.1371/Journal.Pntd.0001347 |
0.712 |
|
| 2011 |
Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. Mbio. 2: e00157-11. PMID 21862630 DOI: 10.1128/Mbio.00157-11 |
0.726 |
|
| 2011 |
James SH, Hartline CB, Harden EA, Driebe EM, Schupp JM, Engelthaler DM, Keim PS, Bowlin TL, Kern ER, Prichard MN. Cyclopropavir inhibits the normal function of the human cytomegalovirus UL97 kinase. Antimicrobial Agents and Chemotherapy. 55: 4682-91. PMID 21788463 DOI: 10.1016/J.Antiviral.2011.03.010 |
0.472 |
|
| 2011 |
Stewart T, Engelthaler DM, Blaney DD, Tuanyok A, Wangsness E, Smith TL, Pearson T, Komatsu KK, Keim P, Currie BJ, Levy C, Sunenshine R. Epidemiology and investigation of melioidosis, Southern Arizona. Emerging Infectious Diseases. 17: 1286-8. PMID 21762589 DOI: 10.3201/Eid1707.100661 |
0.648 |
|
| 2011 |
Waters AE, Contente-Cuomo T, Buchhagen J, Liu CM, Watson L, Pearce K, Foster JT, Bowers J, Driebe EM, Engelthaler DM, Keim PS, Price LB. Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 52: 1227-30. PMID 21498385 DOI: 10.1093/Cid/Cir181 |
0.654 |
|
| 2011 |
Engelthaler DM, Chiller T, Schupp JA, Colvin J, Beckstrom-Sternberg SM, Driebe EM, Moses T, Tembe W, Sinari S, Beckstrom-Sternberg JS, Christoforides A, Pearson JV, Carpten J, Keim P, Peterson A, et al. Next-generation sequencing of Coccidioides immitis isolated during cluster investigation. Emerging Infectious Diseases. 17: 227-32. PMID 21291593 DOI: 10.3201/Eid1702.100620 |
0.568 |
|
| 2011 |
Price LB, Liu CM, Frankel YM, Melendez JH, Aziz M, Buchhagen J, Contente-Cuomo T, Engelthaler DM, Keim PS, Ravel J, Lazarus GS, Zenilman JM. Macroscale spatial variation in chronic wound microbiota: a cross-sectional study. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. 19: 80-8. PMID 20946140 DOI: 10.1111/J.1524-475X.2010.00628.X |
0.606 |
|
| 2010 |
Bowers JR, Engelthaler DM, Ginther JL, Pearson T, Peacock SJ, Tuanyok A, Wagner DM, Currie BJ, Keim PS. BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. Plos One. 5: e15413. PMID 21103048 DOI: 10.1371/Journal.Pone.0015413 |
0.673 |
|
| 2010 |
Brown AN, McSharry JJ, Weng Q, Driebe EM, Engelthaler DM, Sheff K, Keim PS, Nguyen J, Drusano GL. In vitro system for modeling influenza A virus resistance under drug pressure. Antimicrobial Agents and Chemotherapy. 54: 3442-50. PMID 20498316 DOI: 10.1128/Aac.01385-09 |
0.485 |
|
| 2010 |
Wagner DM, Runberg J, Vogler AJ, Lee J, Driebe E, Price LB, Engelthaler DM, Fricke WF, Ravel J, Keim P. No resistance plasmid in Yersinia pestis, North America. Emerging Infectious Diseases. 16: 885-7. PMID 20409397 DOI: 10.3201/Eid1605.090892 |
0.745 |
|
| 2010 |
Sheff KW, York ER, Driebe EM, Barker BM, Rounsley SD, Waddell VG, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Keim PS, Engelthaler DM. Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii. Medical Mycology. 48: 466-9. PMID 20370360 DOI: 10.3109/13693780903218990 |
0.492 |
|
| 2010 |
Liu CM, Driebe EM, Schupp J, Kelley E, Nguyen JT, McSharry JJ, Weng Q, Engelthaler DM, Keim PS. Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis. Journal of Virological Methods. 163: 109-15. PMID 19761797 DOI: 10.1016/J.Jviromet.2009.09.007 |
0.642 |
|
| 2010 |
Sheff KW, Keim PS, Engelthaler DM. Reply to Dr Wiwanitkit Medical Mycology. 48: 680. DOI: 10.3109/13693780903500046 |
0.394 |
|
| 2010 |
Nguyen J, Hoopes J, Driebe E, Sheff K, Engelthaler D, Le M, Patick A. Triple Combination Antiviral Drug (TCAD) Regimen Composed of Amantadine, Ribavirin, and Oseltamivir Imposes a High Genetic Barrier to the Development of Resistance Against Influenza A Viruses In Vitro Antiviral Research. 86: A40. DOI: 10.1016/J.Antiviral.2010.02.393 |
0.305 |
|
| 2009 |
Price LB, Liu CM, Melendez JH, Frankel YM, Engelthaler D, Aziz M, Bowers J, Rattray R, Ravel J, Kingsley C, Keim PS, Lazarus GS, Zenilman JM. Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. Plos One. 4: e6462. PMID 19649281 DOI: 10.1371/Journal.Pone.0006462 |
0.62 |
|
| 2009 |
Nguyen JT, Hoopes JD, Smee DF, Prichard MN, Driebe EM, Engelthaler DM, Le MH, Keim PS, Spence RP, Went GT. Triple combination of oseltamivir, amantadine, and ribavirin displays synergistic activity against multiple influenza virus strains in vitro. Antimicrobial Agents and Chemotherapy. 53: 4115-26. PMID 19620324 DOI: 10.1128/Aac.00476-09 |
0.47 |
|
| 2009 |
Vogler AJ, Birdsell D, Price LB, Bowers JR, Beckstrom-Sternberg SM, Auerbach RK, Beckstrom-Sternberg JS, Johansson A, Clare A, Buchhagen JL, Petersen JM, Pearson T, Vaissaire J, Dempsey MP, Foxall P, ... Engelthaler DM, et al. Phylogeography of Francisella tularensis: global expansion of a highly fit clone. Journal of Bacteriology. 191: 2474-84. PMID 19251856 DOI: 10.1128/Jb.01786-08 |
0.776 |
|
| 2007 |
Sunenshine RH, Anderson S, Erhart L, Vossbrink A, Kelly PC, Engelthaler D, Komatsu K. Public health surveillance for coccidioidomycosis in Arizona Annals of the New York Academy of Sciences. 1111: 96-102. PMID 17513465 DOI: 10.1196/Annals.1406.045 |
0.305 |
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