Nebojsa Jojic, Ph.D. - Publications

Affiliations: 
2002 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Computer Science, Electronics and Electrical Engineering

91 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Aguilera-Sandoval CR, Yang OO, Jojic N, Lovato P, Chen DY, Boechat MI, Cooper P, Zuo J, Ramirez C, Belzer M, Church JA, Krogstad P. Supranormal thymic output up to two decades after HIV-1 infection. Aids (London, England). PMID 26730570 DOI: 10.1097/QAD.0000000000001010  0.92
2015 Matthews PC, Carlson JM, Beloukas A, Malik A, Jooste P, Ogwu A, Shapiro R, Riddell L, Chen F, Luzzi G, Jesuthasan G, Jeffery K, Jojic N, Ndung'u T, Carrington M, et al. HLA-A is a Predictor of Hepatitis B e-Antigen Status in HIV-positive African Adults. The Journal of Infectious Diseases. PMID 26655301 DOI: 10.1093/infdis/jiv592  0.92
2015 Perina A, Jojic N. Capturing Spatial Interdependence in Image Features: The Counting Grid, an Epitomic Representation for Bags of Features. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 2374-87. PMID 26539844 DOI: 10.1109/TPAMI.2015.2424864  0.92
2015 Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, et al. RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease. Science (New York, N.Y.). 347: 1254806. PMID 25525159 DOI: 10.1126/science.1254806  0.92
2014 Perina A, Peruzzo D, Maria Kesa, Jojic N, Murino V, Bellani M, Brambilla P, Castellani U. Mapping brains on grids of features for schizophrenia analysis. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 805-12. PMID 25485454 DOI: 10.1007/978-3-319-10470-6_100  0.92
2014 Dinga JN, Kimbung Mbandi S, Cho-Ngwa F, Fon NP, Moliki J, Efeti RM, Nyasa BR, Anong DN, Jojic N, Heckerman D, Wang R, Titanji VP. Differential T-cell responses of semi-immune and susceptible malaria subjects to in silico predicted and synthetic peptides of Plasmodium falciparum. Acta Tropica. 135: 104-21. PMID 24681218 DOI: 10.1016/j.actatropica.2014.03.007  0.92
2014 Perina A, Lovato P, Jojic N. Bags of words models of epitope sets: HIV viral load regression with counting grids. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 288-99. PMID 24297555  0.92
2013 Hertz T, Oshansky CM, Roddam PL, DeVincenzo JP, Caniza MA, Jojic N, Mallal S, Phillips E, James I, Halloran ME, Thomas PG, Corey L. HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection. Proceedings of the National Academy of Sciences of the United States of America. 110: 13492-7. PMID 23878211 DOI: 10.1073/pnas.1221555110  0.92
2013 Perina A, Jojic N. Capturing layers in image collections with componential models: From the layered epitome to the componential counting grid Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 500-507. DOI: 10.1109/CVPR.2013.71  0.92
2013 Wauthier FL, Jordan MI, Jojic N. Efficient ranking from pairwise comparisons 30th International Conference On Machine Learning, Icml 2013. 1146-1154.  0.92
2013 Wauthier FL, Jojic N, Jordan MI. A comparative framework for Preconditioned Lasso algorithms Advances in Neural Information Processing Systems 0.92
2013 Perina A, Jojic N, Bicego M, Turski A. Documents as multiple overlapping windows into a grid of counts Advances in Neural Information Processing Systems 0.92
2012 Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ. Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data. Bmc Bioinformatics. 13: S11. PMID 22537040 DOI: 10.1186/1471-2105-13-S6-S11  0.92
2012 Perina A, Cristani M, Castellani U, Murino V, Jojic N. Free Energy Score Spaces: Using Generative Information in Discriminative Classifiers. Ieee Transactions On Pattern Analysis and Machine Intelligence. 34: 1249-62. PMID 22156097 DOI: 10.1109/TPAMI.2011.241  0.92
2012 Wauthier FL, Jojic N, Jordan MI. Active spectral clustering via iterative uncertainty reduction Proceedings of the Acm Sigkdd International Conference On Knowledge Discovery and Data Mining. 1339-1347. DOI: 10.1145/2339530.2339737  0.92
2012 Perina A, Jojic N, Cristani M, Murino V. Stel component analysis: Joint segmentation, modeling and recognition of objects classes International Journal of Computer Vision. 100: 241-260. DOI: 10.1007/s11263-012-0536-5  0.92
2012 Lovato P, Bicego M, Cristani M, Jojic N, Perina A. Feature selection using counting grids: Application to microarray data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7626: 629-637. DOI: 10.1007/978-3-642-34166-3_69  0.92
2012 Perina A, Jojic N. Spring lattice counting grids: Scene recognition using deformable positional constraints Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7577: 837-851. DOI: 10.1007/978-3-642-33783-3_60  0.92
2011 Wauthier FL, Jordan MI, Jojic N. Nonparametric combinatorial sequence models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1649-60. PMID 22047543 DOI: 10.1089/cmb.2011.0175  0.92
2011 Zhang GL, Ansari HR, Bradley P, Cawley GC, Hertz T, Hu X, Jojic N, Kim Y, Kohlbacher O, Lund O, Lundegaard C, Magaret CA, Nielsen M, Papadopoulos H, Raghava GP, et al. Machine learning competition in immunology - Prediction of HLA class I binding peptides. Journal of Immunological Methods. 374: 1-4. PMID 21986107 DOI: 10.1016/j.jim.2011.09.010  0.92
2011 Rolland M, Frahm N, Nickle DC, Jojic N, Deng W, Allen TM, Brander C, Heckerman DE, Mullins JI. Increased breadth and depth of cytotoxic T lymphocytes responses against HIV-1-B Nef by inclusion of epitope variant sequences. Plos One. 6: e17969. PMID 21464919 DOI: 10.1371/journal.pone.0017969  0.92
2011 Hertz T, Nolan D, James I, John M, Gaudieri S, Phillips E, Huang JC, Riadi G, Mallal S, Jojic N. Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins. Journal of Virology. 85: 1310-21. PMID 21084470 DOI: 10.1128/JVI.01966-10  0.92
2011 Huang JC, Jojic N. Modeling major histocompatibility complex binding by nonparametric averaging of multiple predictors and sequence encodings. Journal of Immunological Methods. 374: 35-42. PMID 20934429 DOI: 10.1016/j.jim.2010.10.001  0.92
2011 Perina A, Jojic N. Image analysis by counting on a grid Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1985-1992. DOI: 10.1109/CVPR.2011.5995742  0.92
2011 Huang JC, Jojic N. Variable selection through correlation sifting Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6577: 106-123. DOI: 10.1007/978-3-642-20036-6_12  0.92
2011 Jojic N, Perina A. Multidimensional counting grids: Inferring word order from disordered bags of words Proceedings of the 27th Conference On Uncertainty in Artificial Intelligence, Uai 2011. 547-556.  0.92
2010 Perina A, Jojic N, Castellani U, Cristani M, Murino V. Object recognition with hierarchical stel models Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6316: 15-28. DOI: 10.1007/978-3-642-15567-3_2  0.92
2010 Huang JC, Jojic N, Meek C. Exact inference and learning for cumulative distribution functions on loopy graphs Advances in Neural Information Processing Systems 23: 24th Annual Conference On Neural Information Processing Systems 2010, Nips 2010 0.92
2010 Huang JC, Jojic N. Maximum-likelihood learning of cumulative distribution functions on graphs Journal of Machine Learning Research. 9: 342-349.  0.92
2010 Jojic N, Perina A, Murino V. Structural epitome: A way to summarize one's visual experience Advances in Neural Information Processing Systems 23: 24th Annual Conference On Neural Information Processing Systems 2010, Nips 2010 0.92
2009 Reyes-Gomez M, Jojic N. Speech separation by efficient combinatorial decoding of speech mixtures Proceedings - 2009 Ieee International Conference On Multimedia and Expo, Icme 2009. 498-505. DOI: 10.1109/ICME.2009.5202543  0.92
2009 Perina A, Cristani M, Castellani U, Murino V, Jojic N. A hybrid generative/discriminative classification framework based on free-energy terms Proceedings of the Ieee International Conference On Computer Vision. 2058-2065. DOI: 10.1109/ICCV.2009.5459453  0.92
2009 Jojic N, Perina A, Cristani M, Murino V, Frey B. Stel component analysis: Modeling spatial correlations in image class structure 2009 Ieee Computer Society Conference On Computer Vision and Pattern Recognition Workshops, Cvpr Workshops 2009. 2044-2051. DOI: 10.1109/CVPRW.2009.5206581  0.92
2009 Perina A, Cristani M, Castellani U, Murino V, Jojic N. Free energy score-space Advances in Neural Information Processing Systems 22 - Proceedings of the 2009 Conference. 1428-1436.  0.92
2008 Yerly D, Heckerman D, Allen T, Suscovich TJ, Jojic N, Kadie C, Pichler WJ, Cerny A, Brander C. Design, expression, and processing of epitomized hepatitis C virus-encoded CTL epitopes. Journal of Immunology (Baltimore, Md. : 1950). 181: 6361-70. PMID 18941227  0.92
2008 Zaitlen N, Reyes-Gomez M, Heckerman D, Jojic N. Shift-invariant adaptive double threading: learning MHC II-peptide binding. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 927-42. PMID 18771399 DOI: 10.1089/cmb.2007.0183  0.92
2008 Nickle DC, Jojic N, Heckerman D, Jojic V, Kirovski D, Rolland M, Kosakovsky Pond S, Mullins JI. Comparison of immunogen designs that optimize peptide coverage: reply to Fischer et al. Plos Computational Biology. 4: e25. PMID 18463692 DOI: 10.1371/journal.pcbi.0040025  0.92
2008 Jojic V, Hertz T, Jojic N. Population sequencing using short reads: HIV as a case study. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 114-25. PMID 18229680  0.92
2008 Kannan A, Jojic N, Frey BJ. Fast transformation-invariant component analysis International Journal of Computer Vision. 77: 87-101. DOI: 10.1007/s11263-007-0094-4  0.92
2008 Cheung V, Frey BJ, Jojic N. Video epitomes International Journal of Computer Vision. 76: 141-152. DOI: 10.1007/s11263-006-0001-4  0.92
2008 Dueck D, Frey BJ, Jojic N, Jojic V, Giaever G, Emili A, Musso G, Hegele R. Constructing treatment portfolios using affinity propagation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 360-371. DOI: 10.1007/978-3-540-78839-3_31  0.92
2007 Frahm N, Yusim K, Suscovich TJ, Adams S, Sidney J, Hraber P, Hewitt HS, Linde CH, Kavanagh DG, Woodberry T, Henry LM, Faircloth K, Listgarten J, Kadie C, Jojic N, et al. Extensive HLA class I allele promiscuity among viral CTL epitopes. European Journal of Immunology. 37: 2419-33. PMID 17705138 DOI: 10.1002/eji.200737365  0.92
2007 Bockhorst J, Lu F, Janes JH, Keebler J, Gamain B, Awadalla P, Su Xz, Samudrala R, Jojic N, Smith JD. Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA Molecular and Biochemical Parasitology. 155: 103-112. PMID 17669514 DOI: 10.1016/j.molbiopara.2007.06.007  0.92
2007 Nickle DC, Rolland M, Jensen MA, Pond SL, Deng W, Seligman M, Heckerman D, Mullins JI, Jojic N. Coping with viral diversity in HIV vaccine design. Plos Computational Biology. 3: e75. PMID 17465674 DOI: 10.1371/journal.pcbi.0030075  0.92
2007 Gulwani S, Jojic N. Program verification as probabilistic inference Conference Record of the Annual Acm Symposium On Principles of Programming Languages. 277-289. DOI: 10.1145/1190216.1190258  0.92
2007 Cheung V, Jojic N, Samaras D. Capturing long-range correlations with patch models Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. DOI: 10.1109/CVPR.2007.383097  0.92
2007 Bockhorst J, Jojic N. Discovering patterns in biological sequences by optimal segmentation Proceedings of the 23rd Conference On Uncertainty in Artificial Intelligence, Uai 2007. 17-24.  0.92
2007 O'Rourke S, Zaitlen N, Jojic N, Eskin E. Reconstructing the phylogeny of mobile elements Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 196-210.  0.92
2007 Zaitlen N, Reyes-Gomez M, Heckerman D, Jojic N. Shift-invariant adaptive double threading: Learning MHC II - peptide binding Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4453: 181-195.  0.92
2006 Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O. Learning MHC I--peptide binding. Bioinformatics (Oxford, England). 22: e227-35. PMID 16873476 DOI: 10.1093/bioinformatics/btl255  0.92
2006 Petrovic N, Ivanovic A, Jojic N, Basu S, Huang T. Recursive estimation of generative models of video Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: 77-86. DOI: 10.1109/CVPR.2006.248  0.92
2006 Jojic N, Winn J, Zitnick L. Escaping local minima through hierarchical model selection: Automatic object discovery, segmentation, and tracking in video Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: 117-124. DOI: 10.1109/CVPR.2006.113  0.92
2006 Reyes-Gomez MJ, Jojic N, Ellis DPW. Modelling sound dynamics using deformable spectrograms: Segmenting the spectrogram into smooth regions Conference Record - Asilomar Conference On Signals, Systems and Computers. 49-53. DOI: 10.1109/ACSSC.2006.356581  0.92
2006 Kannan A, Frey B, Jojic N. A generative model of dense optical flow in layers Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3667: 104-114. DOI: 10.1007/11676959_9  0.92
2005 Frey BJ, Jojic N. A comparison of algorithms for inference and learning in probabilistic graphical models. Ieee Transactions On Pattern Analysis and Machine Intelligence. 27: 1392-416. PMID 16173184 DOI: 10.1109/TPAMI.2005.169  0.92
2005 Zitnick CL, Jojic N, Kang SB. Consistent segmentation for optical flow estimation Proceedings of the Ieee International Conference On Computer Vision. 1308-1315. DOI: 10.1109/ICCV.2005.61  0.92
2005 Winn J, Jojic N. LOCUS: Learning Object Classes with Unsupervised Segmentation Proceedings of the Ieee International Conference On Computer Vision. 756-763. DOI: 10.1109/ICCV.2005.148  0.92
2005 Petrovic N, Jojic N, Huang TS. Adaptive video fast forward Multimedia Tools and Applications. 26: 327-344. DOI: 10.1007/s11042-005-0895-9  0.92
2005 Jojic N, Jojic V, Frey B, Meek C, Heckerman D. Using "epitomes" to model genetic diversity: Rational design of HIV vaccine cocktails Advances in Neural Information Processing Systems. 587-594.  0.92
2005 Kannan A, Jojic N, Frey BJ. Generative model for layers of appearance and deformation Aistats 2005 - Proceedings of the 10th International Workshop On Artificial Intelligence and Statistics. 166-173.  0.92
2005 Reyes-Gomez M, Jojic N, Ellis DPW. Deformable spectrograms Aistats 2005 - Proceedings of the 10th International Workshop On Artificial Intelligence and Statistics. 285-292.  0.92
2005 Narasimhan M, Jojic N, Bilmes J. Q-clustering Advances in Neural Information Processing Systems. 979-986.  0.92
2005 Pal C, Jojic N. Interactive montages of sprites for indexing and summarizing security video Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: 1192.  0.92
2004 Jojic V, Jojic N, Meek C, Geiger D, Siepel A, Haussler D, Heckerman D. Efficient approximations for learning phylogenetic HMM models from data. Bioinformatics (Oxford, England). 20: i161-8. PMID 15262795 DOI: 10.1093/bioinformatics/bth917  0.92
2004 Petrovic N, Jojic N, Huang TS. Hierarchical video clustering 2004 Ieee 6th Workshop On Multimedia Signal Processing. 423-426.  0.92
2004 Pal C, Szeliski R, Uyttendaele M, Jojic N. Probability models for high dynamic range imaging Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: II173-II180.  0.92
2004 Jojic N, Caspi Y. Capturing image structure with probabilistic index maps Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: I212-I219.  0.92
2004 Hershey J, Attias H, Jojic N, Kristjansson T. Audio-visual graphical models for speech processing Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 5: V-649-V-652.  0.92
2004 Reyes-Gomez MJ, Ellis DPW, Jojic N. Multiband audio modeling for single-channel acoustic source separation Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 5: V-641-V-644.  0.92
2003 Beal MJ, Jojic N, Attias H. A graphical model for audiovisual object tracking Ieee Transactions On Pattern Analysis and Machine Intelligence. 25: 828-836. DOI: 10.1109/TPAMI.2003.1206512  0.92
2003 Frey BJ, Jojic N. Transformation-invariant clustering using the EM algorithm Ieee Transactions On Pattern Analysis and Machine Intelligence. 25: 1-17. DOI: 10.1109/TPAMI.2003.1159942  0.92
2003 Jojic N, Petrovic N, Huang TS. Scene generative models for adaptive video fast forward Ieee International Conference On Image Processing. 2: 619-622.  0.92
2003 Jojic N, Frey BJ, Kannan A. Epitomic analysis of appearance and shape Proceedings of the Ieee International Conference On Computer Vision. 1: 34-41.  0.92
2003 Frey BJ, Jojic N, Kannan A. Learning appearance and transparency manifolds of occluded objects in layers Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: I/45-I/52.  0.92
2003 Kannan A, Jojic N, Frey B. Fast transformation-invariant factor analysis Advances in Neural Information Processing Systems 0.92
2002 Beal MJ, Jojic N, Attias H. A self-calibrating algorithm for speaker tracking based on audio-visual statistical models Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 2: II/1997-II/2000.  0.92
2002 Frey BJ, Jojic N. Fast, large-scale transformation-invariant clustering Advances in Neural Information Processing Systems 0.92
2002 Frey BJ, Kannan A, Jojic N. Product analysis: Learning to model observations as products of hidden variables Advances in Neural Information Processing Systems 0.92
2002 Beal MJ, Attias H, Jojic N. Audio-video sensor fusion with probabilistic graphical models Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2350: 736-750.  0.92
2002 Pal C, Frey BJ, Jojic N. Learning montages of transformed latent images as representations of objects that change in appearance Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2353: 715-731.  0.92
2001 Jojic N, Frey BJ. Learning flexible sprites in video layers Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: I199-I206.  0.92
2001 Jojic N, Simard P, Frey BJ, Heckerman D. Separating appearance from deformation Proceedings of the Ieee International Conference On Computer Vision. 2: 288-294.  0.92
2000 Frey BJ, Jojic N. Transformation-invariant filtering using expectation maximization Ieee 2000 Adaptive Systems For Signal Processing, Communications, and Control Symposium, as-Spcc 2000. 19-24. DOI: 10.1109/ASSPCC.2000.882440  0.92
2000 Jojic N, Brumitt B, Meyers B, Harris S, Huang T. Detection and estimation of pointing gestures in dense disparity maps Proceedings - 4th Ieee International Conference On Automatic Face and Gesture Recognition, Fg 2000. 468-475. DOI: 10.1109/AFGR.2000.840676  0.92
2000 Jojic N, Frey BJ. Topographic transformation as a discrete latent variable Advances in Neural Information Processing Systems. 477-483.  0.92
1999 Jojic N, Gu J, Shen HC, Huang TS. Computer modeling, analysis, and synthesis of dressed humans Ieee Transactions On Circuits and Systems For Video Technology. 9: 378-388. DOI: 10.1109/76.752103  0.92
1997 Jojic N, Gu J, Shen HC, Huang T. 3-D reconstruction of multipart self-occluding objects Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1352: 455-462.  0.92
1997 Jojic N, Huang TS. On analysis of cloth drape range data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1352: 463-470.  0.92
1996 Wang Z, Rao RK, Nandy D, Ben-Arie J, Jojic N. A generalized expansion matching based feature extractor Proceedings - International Conference On Pattern Recognition. 2: 29-33. DOI: 10.1109/ICPR.1996.546718  0.92
1996 Mehdi N, Yu X, Wu D, Jojic N, Baker B, Gosavi P, Seyd A, Bodak S, Umetani K, He B. Body surface Laplacian mapping from potential recordings in man Southern Biomedical Engineering Conference - Proceedings. 359-360.  0.92
1996 Nandy D, Ben-Arie J, Jojic N, Wang Z, Rao RK. On the use of the Karhunen-Loeve transform and expansion matching for generalized feature detection Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4: 2223-2226.  0.92
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