Kenny Ye - Publications

Stony Brook University, Stony Brook, NY, United States 

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Wang T, Xue X, Xie X, Ye K, Zhu X, Elston RC. Adjustment for covariates using summary statistics of genome-wide association studies. Genetic Epidemiology. PMID 30238496 DOI: 10.1002/gepi.22148  0.32
2017 Loudig O, Wang T, Ye K, Lin J, Wang Y, Ramnauth A, Liu C, Stark A, Chitale D, Greenlee R, Multerer D, Honda S, Daida Y, Spencer Feigelson H, Glass A, et al. Evaluation and Adaptation of a Laboratory-Based cDNA Library Preparation Protocol for Retrospective Sequencing of Archived MicroRNAs from up to 35-Year-Old Clinical FFPE Specimens. International Journal of Molecular Sciences. 18. PMID 28335433 DOI: 10.3390/ijms18030627  0.32
2014 Iossifov I, O'Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D, Stessman HA, Witherspoon KT, Vives L, Patterson KE, Smith JD, Paeper B, Nickerson DA, Dea J, Dong S, ... ... Ye K, et al. The contribution of de novo coding mutations to autism spectrum disorder. Nature. 515: 216-21. PMID 25363768 DOI: 10.1038/nature13908  0.44
2013 Cheng G, Tang CS, Wong EH, Cheng WW, So MT, Miao X, Zhang R, Cui L, Liu X, Ngan ES, Lui VC, Chung PH, Chan IH, Liu J, Zhong W, ... ... Ye K, et al. Common genetic variants regulating ADD3 gene expression alter biliary atresia risk. Journal of Hepatology. 59: 1285-91. PMID 23872602 DOI: 10.1016/j.jhep.2013.07.021  0.44
2012 Iossifov I, Ronemus M, Levy D, Wang Z, Hakker I, Rosenbaum J, Yamrom B, Lee YH, Narzisi G, Leotta A, Kendall J, Grabowska E, Ma B, Marks S, Rodgers L, ... ... Ye K, et al. De novo gene disruptions in children on the autistic spectrum. Neuron. 74: 285-99. PMID 22542183 DOI: 10.1016/j.neuron.2012.04.009  0.44
2012 Huffman DM, Deelen J, Ye K, Bergman A, Slagboom EP, Barzilai N, Atzmon G. Distinguishing between longevity and buffered-deleterious genotypes for exceptional human longevity: the case of the MTP gene. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 67: 1153-60. PMID 22496539 DOI: 10.1093/gerona/gls103  0.44
2012 Lee YH, Ronemus M, Kendall J, Lakshmi B, Leotta A, Levy D, Esposito D, Grubor V, Ye K, Wigler M, Yamrom B. Reducing system noise in copy number data using principal components of self-self hybridizations. Proceedings of the National Academy of Sciences of the United States of America. 109: E103-10. PMID 22207624 DOI: 10.1073/pnas.1106233109  0.44
2011 Pradhan K, Yoon SC, Wang T, Ye K. Identification of genes and variants associated with quantitative traits using Bayesian factor screening. Bmc Proceedings. 5: S4. PMID 22373183 DOI: 10.1186/1753-6561-5-S9-S4  0.32
2011 Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE. Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples. Frontiers in Genetics. 2: 51. PMID 22303347 DOI: 10.3389/fgene.2011.00051  0.32
2011 Ye KQ, Engelman CD. Detecting multiple causal rare variants in exome sequence data. Genetic Epidemiology. 35: S18-21. PMID 22128053 DOI: 10.1002/gepi.20644  0.44
2011 Levy D, Ronemus M, Yamrom B, Lee YH, Leotta A, Kendall J, Marks S, Lakshmi B, Pai D, Ye K, Buja A, Krieger A, Yoon S, Troge J, Rodgers L, et al. Rare de novo and transmitted copy-number variation in autistic spectrum disorders. Neuron. 70: 886-97. PMID 21658582 DOI: 10.1016/j.neuron.2011.05.015  0.44
2010 Murphy MW, Sarver AL, Rice D, Hatzi K, Ye K, Melnick A, Heckert LL, Zarkower D, Bardwell VJ. Genome-wide analysis of DNA binding and transcriptional regulation by the mammalian Doublesex homolog DMRT1 in the juvenile testis. Proceedings of the National Academy of Sciences of the United States of America. 107: 13360-5. PMID 20616082 DOI: 10.1073/pnas.1006243107  0.44
2010 Wang T, Lin CY, Rohan TE, Ye K. Resequencing of pooled DNA for detecting disease associations with rare variants. Genetic Epidemiology. 34: 492-501. PMID 20578089 DOI: 10.1002/gepi.20502  0.32
2009 Yoon S, Xuan Z, Makarov V, Ye K, Sebat J. Sensitive and accurate detection of copy number variants using read depth of coverage. Genome Research. 19: 1586-92. PMID 19657104 DOI: 10.1101/gr.092981.109  0.44
2009 Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, Zhang MQ, Ye K, Bhattacharjee A, Brizuela L, McCombie WR, Wigler M, Hannon GJ, Hicks JB. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Genome Research. 19: 1593-605. PMID 19581485 DOI: 10.1101/gr.095190.109  0.44
2009 Ci W, Polo JM, Cerchietti L, Shaknovich R, Wang L, Yang SN, Ye K, Farinha P, Horsman DE, Gascoyne RD, Elemento O, Melnick A. The BCL6 transcriptional program features repression of multiple oncogenes in primary B cells and is deregulated in DLBCL. Blood. 113: 5536-48. PMID 19307668 DOI: 10.1182/blood-2008-12-193037  0.44
2009 Wang T, Ho G, Ye K, Strickler H, Elston RC. A partial least-square approach for modeling gene-gene and gene-environment interactions when multiple markers are genotyped. Genetic Epidemiology. 33: 6-15. PMID 18615621 DOI: 10.1002/gepi.20351  0.32
2009 Jones BA, Li W, Nachtsheim CJ, Ye KQ. Model-robust supersaturated and partially supersaturated designs Journal of Statistical Planning and Inference. 139: 45-53. DOI: 10.1016/j.jspi.2008.05.015  0.44
2008 Kim W, Gordon D, Sebat J, Ye KQ, Finch SJ. Computing power and sample size for case-control association studies with copy number polymorphism: application of mixture-based likelihood ratio test. Plos One. 3: e3475. PMID 18941524 DOI: 10.1371/journal.pone.0003475  0.44
2008 Sohal D, Yeatts A, Ye K, Pellagatti A, Zhou L, Pahanish P, Mo Y, Bhagat T, Mariadason J, Boultwood J, Melnick A, Greally J, Verma A. Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration. Plos One. 3: e2965. PMID 18698424 DOI: 10.1371/journal.pone.0002965  0.44
2008 Figueroa ME, Reimers M, Thompson RF, Ye K, Li Y, Selzer RR, Fridriksson J, Paietta E, Wiernik P, Green RD, Greally JM, Melnick A. An integrative genomic and epigenomic approach for the study of transcriptional regulation. Plos One. 3: e1882. PMID 18365023 DOI: 10.1371/journal.pone.0001882  0.44
2007 Zhao X, Leotta A, Kustanovich V, Lajonchere C, Geschwind DH, Law K, Law P, Qiu S, Lord C, Sebat J, Ye K, Wigler M. A unified genetic theory for sporadic and inherited autism. Proceedings of the National Academy of Sciences of the United States of America. 104: 12831-6. PMID 17652511 DOI: 10.1073/pnas.0705803104  0.44
2007 Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J, Leotta A, Pai D, Zhang R, Lee YH, Hicks J, ... ... Ye K, et al. Strong association of de novo copy number mutations with autism. Science (New York, N.Y.). 316: 445-9. PMID 17363630 DOI: 10.1126/science.1138659  0.44
2007 Pedrosa E, Ye K, Nolan KA, Morrell L, Okun JM, Persky AD, Saito T, Lachman HM. Positive association of schizophrenia to JARID2 gene. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 144: 45-51. PMID 16967465 DOI: 10.1002/ajmg.b.30386  0.44
2007 Jones BA, Li W, Nachtsheim CJ, Ye KQ. Model discrimination-another perspective on model-robust designs Journal of Statistical Planning and Inference. 137: 1576-1583. DOI: 10.1016/j.jspi.2006.09.006  0.44
2006 Hicks J, Krasnitz A, Lakshmi B, Navin NE, Riggs M, Leibu E, Esposito D, Alexander J, Troge J, Grubor V, Yoon S, Wigler M, Ye K, Børresen-Dale AL, Naume B, et al. Novel patterns of genome rearrangement and their association with survival in breast cancer. Genome Research. 16: 1465-79. PMID 17142309 DOI: 10.1101/gr.5460106  0.44
2006 Khulan B, Thompson RF, Ye K, Fazzari MJ, Suzuki M, Stasiek E, Figueroa ME, Glass JL, Chen Q, Montagna C, Hatchwell E, Selzer RR, Richmond TA, Green RD, Melnick A, et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Research. 16: 1046-55. PMID 16809668 DOI: 10.1101/gr.5273806  0.44
2006 Lachman HM, Pedrosa E, Nolan KA, Glass M, Ye K, Saito T. Analysis of polymorphisms in AT-rich domains of neuregulin 1 gene in schizophrenia. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. 141: 102-9. PMID 16287046 DOI: 10.1002/ajmg.b.30242  0.44
2006 Linkletter C, Bingham D, Hengartner N, Higdon D, Ye KQ. Variable selection for Gaussian process models in computer experiments Technometrics. 48: 478-490. DOI: 10.1198/004017006000000228  0.44
2005 Duan T, Finch SJ, Ye KQ, Chase GA, Mendell NR. Using mixture models to characterize disease-related traits. Bmc Genetics. 6: S99. PMID 16451715 DOI: 10.1186/1471-2156-6-S1-S99  0.44
2005 Sung H, Finch SJ, Ye KQ, Mendell NR. A gene-model-free method for linkage analysis of a disease-related-trait based on analysis of proband/sibling pairs. Bmc Genetics. 6: S47. PMID 16451658 DOI: 10.1186/1471-2156-6-S1-S47  0.44
2005 Yoon S, Suh YJ, Mendell NR, Ye KQ. A Bayesian approach for applying Haseman-Elston methods. Bmc Genetics. 6: S39. PMID 16451649 DOI: 10.1186/1471-2156-6-S1-S39  0.44
2005 Judex S, Zhong N, Squire ME, Ye K, Donahue LR, Hadjiargyrou M, Rubin CT. Mechanical modulation of molecular signals which regulate anabolic and catabolic activity in bone tissue. Journal of Cellular Biochemistry. 94: 982-94. PMID 15597385 DOI: 10.1002/jcb.20363  0.44
2005 Glimm J, Grove JW, Kang Y, Lee T, Li X, Sharp DH, Yu Y, Ye K, Zhao M. Statistical riemann problems and a composition law for errors in numerical solutions of shock physics problems Siam Journal On Scientific Computing. 26: 666-697. DOI: 10.1137/S1064827503427534  0.44
2005 Dutta S, George E, Glimm J, Grove JW, Jin H, Lee T, Li X, Sharp DH, Ye K, Yu Y, Zhang Y, Zhao M. Shock wave interactions in spherical and perturbed spherical geometries Nonlinear Analysis, Theory, Methods and Applications. 63: 644-652. DOI: 10.1016/  0.44
2005 Gordon D, De La Vega FM, Finch SJ, Ye KQ. Power for complex trait genetic association Clinical Neuroscience Research. 5: 31-35. DOI: 10.1016/j.cnr.2005.07.004  0.44
2004 Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, MÃ¥nér S, Massa H, Walker M, Chi M, Navin N, Lucito R, Healy J, Hicks J, Ye K, et al. Large-scale copy number polymorphism in the human genome. Science (New York, N.Y.). 305: 525-8. PMID 15273396 DOI: 10.1126/science.1098918  0.44
2004 Cheng SW, Ye KQ. Geometric isomorphism and minimum aberration for factorial designs with quantitative factors Annals of Statistics. 32: 2168-2185. DOI: 10.1214/009053604000000599  0.44
2004 Ye KQ. A note on regular fractional factorial designs Statistica Sinica. 14: 1069-1074.  0.44
2003 Oh C, Ye KQ, He Q, Mendell NR. Locating disease genes using Bayesian variable selection with the Haseman-Elston method. Bmc Genetics. 4: S69. PMID 14975137 DOI: 10.1186/1471-2156-4-S1-S69  0.44
2003 Suh YJ, Ye KQ, Mendell NR. A method for evaluating the results of Bayesian model selection: application to linkage analyses of attributes determined by two or more genes. Human Heredity. 55: 147-52. PMID 12931054 DOI: 10.1159/000072320  0.44
2003 Judex S, Boyd S, Qin YX, Turner S, Ye K, Müller R, Rubin C. Adaptations of trabecular bone to low magnitude vibrations result in more uniform stress and strain under load. Annals of Biomedical Engineering. 31: 12-20. PMID 12572652 DOI: 10.1114/1.1535414  0.44
2003 Ye KQ. Indicator function and its application in two-level factorial designs Annals of Statistics. 31: 984-994. DOI: 10.1214/aos/1056562470  0.44
2003 Glimm J, Lee Y, Ye KQ, Sharp DH. Prediction using numerical simulations, a Bayesian framework for uncertainty quantification and its statistical challenge 4th International Symposium On Uncertainty Modeling and Analysis, Isuma 2003. 380-385. DOI: 10.1109/ISUMA.2003.1236189  0.44
2002 DeVolder B, Glimm J, Grove JW, Kang Y, Lee Y, Pao K, Sharp DH, Ye K. Uncertainty quantification for multiscale simulations Journal of Fluids Engineering, Transactions of the Asme. 124: 29-41. DOI: 10.1115/1.1445139  0.44
2001 Glimm J, Hou S, Kim H, Lee YH, Sharp DH, Ye K, Zou Q. Risk management for petroleum reservoir production: A simulation-based study of prediction Computational Geosciences. 5: 173-197. DOI: 10.1023/A:1013715604079  0.44
1998 Ye KQ. Orthogonal column latin hypercubes and their application in computer experiments Journal of the American Statistical Association. 93: 1430-1439.  0.44
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