Tatiana Tatarinova, Ph.D. - Publications

2006 University of Southern California, Los Angeles, CA, United States 

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Yamada WM, Neely MN, Bartroff J, Bayard DS, Burke JV, Guilder MV, Jelliffe RW, Kryshchenko A, Leary R, Tatarinova T, Schumitzky A. An Algorithm for Nonparametric Estimation of a Multivariate Mixing Distribution with Applications to Population Pharmacokinetics. Pharmaceutics. 13. PMID 33396749 DOI: 10.3390/pharmaceutics13010042  0.56
2017 Triska P, Chekanov N, Stepanov V, Khusnutdinova EK, Kumar GPA, Akhmetova V, Babalyan K, Boulygina E, Kharkov V, Gubina M, Khidiyatova I, Khitrinskaya I, Khrameeva EE, Khusainova R, Konovalova N, ... ... Tatarinova TV, et al. Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe. Bmc Genetics. 18: 110. PMID 29297395 DOI: 10.1186/S12863-017-0578-3  0.4
2017 Triska M, Solovyev V, Baranova A, Kel A, Tatarinova TV. Nucleotide patterns aiding in prediction of eukaryotic promoters. Plos One. 12: e0187243. PMID 29141011 DOI: 10.1371/Journal.Pone.0187243  0.4
2017 Chan KL, Tatarinova TV, Rosli R, Amiruddin N, Azizi N, Halim MAA, Sanusi NSNM, Jayanthi N, Ponomarenko P, Triska M, Solovyev V, Firdaus-Raih M, Sambanthamurthi R, Murphy D, Low EL. Evidence-based gene models for structural and functional annotations of the oil palm genome. Biology Direct. 12: 21. PMID 28886750 DOI: 10.1186/s13062-017-0191-4  0.4
2017 Triska M, Ivliev A, Nikolsky Y, Tatarinova TV. Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer. Methods in Molecular Biology (Clifton, N.J.). 1613: 291-310. PMID 28849565 DOI: 10.1007/978-1-4939-7027-8_11  0.4
2016 Flegontov P, Changmai P, Zidkova A, Logacheva MD, Altınışık NE, Flegontova O, Gelfand MS, Gerasimov ES, Khrameeva EE, Konovalova OP, Neretina T, Nikolsky YV, Starostin G, Stepanova VV, Travinsky IV, ... ... Tatarinova TV, et al. Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry. Scientific Reports. 6: 20768. PMID 26865217 DOI: 10.1038/srep20768  0.56
2016 Tatarinova TV, Lysnyansky I, Nikolsky YV, Bolshoy A. The mysterious orphans of Mycoplasmataceae. Biology Direct. 11: 2. PMID 26747447 DOI: 10.1186/s13062-015-0104-3  0.56
2015 Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A. Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors. Biomed Research International. 2015: 786861. PMID 26114113 DOI: 10.1155/2015/786861  0.56
2015 Kozlov K, Chebotarev D, Hassan M, Triska M, Triska P, Flegontov P, Tatarinova TV. Differential Evolution approach to detect recent admixture. Bmc Genomics. 16: S9. PMID 26111206 DOI: 10.1186/1471-2164-16-S8-S9  0.56
2015 ArunKumar G, Tatarinova TV, Duty J, Rollo D, Syama A, Arun VS, Kavitha VJ, Triska P, Greenspan B, Wells RS, Pitchappan R. Genome-wide signatures of male-mediated migration shaping the Indian gene pool. Journal of Human Genetics. PMID 25994871 DOI: 10.1038/Jhg.2015.51  0.56
2015 Elhaik E, Tatarinova TV, Klyosov AA, Graur D. Reply to Mendez et al: the 'extremely ancient' chromosome that still isn't. European Journal of Human Genetics : Ejhg. 23: 567-8. PMID 25315661 DOI: 10.1038/Ejhg.2014.227  0.56
2014 Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, et al. Geographic population structure analysis of worldwide human populations infers their biogeographical origins. Nature Communications. 5: 3513. PMID 24781250 DOI: 10.1038/Ncomms4513  0.56
2014 Elhaik E, Tatarinova TV, Klyosov AA, Graur D. The 'extremely ancient' chromosome that isn't: a forensic bioinformatic investigation of Albert Perry's X-degenerate portion of the Y chromosome. European Journal of Human Genetics : Ejhg. 22: 1111-6. PMID 24448544 DOI: 10.1038/Ejhg.2013.303  0.56
2014 Elhaik E, Pellegrini M, Tatarinova TV. Gene expression and nucleotide composition are associated with genic methylation level in Oryza sativa. Bmc Bioinformatics. 15: 23. PMID 24447369 DOI: 10.1186/1471-2105-15-23  0.56
2013 Tatarinova T, Kryshchenko A, Triska M, Hassan M, Murphy D, Neely M, Schumitzky A. NPEST: a nonparametric method and a database for transcription start site prediction. Quantitative Biology. 1: 261-271. PMID 25197613 DOI: 10.1007/s40484-013-0022-2  0.56
2013 Tatarinova T, Elhaik E, Pellegrini M. Cross-species analysis of genic GC3 content and DNA methylation patterns. Genome Biology and Evolution. 5: 1443-56. PMID 23833164 DOI: 10.1093/Gbe/Evt103  0.56
2013 Triska M, Grocutt D, Southern J, Murphy DJ, Tatarinova T. cisExpress: motif detection in DNA sequences. Bioinformatics (Oxford, England). 29: 2203-5. PMID 23793750 DOI: 10.1093/bioinformatics/btt366  0.56
2013 Sonkin D, Hassan M, Murphy DJ, Tatarinova TV. Tumor suppressors status in cancer cell line Encyclopedia. Molecular Oncology. 7: 791-8. PMID 23639312 DOI: 10.1016/j.molonc.2013.04.001  0.56
2013 Tatarinova T, Neely M, Bartroff J, van Guilder M, Yamada W, Bayard D, Jelliffe R, Leary R, Chubatiuk A, Schumitzky A. Two general methods for population pharmacokinetic modeling: non-parametric adaptive grid and non-parametric Bayesian. Journal of Pharmacokinetics and Pharmacodynamics. 40: 189-99. PMID 23404393 DOI: 10.1007/S10928-013-9302-8  0.56
2013 Ahmad T, Sablok G, Tatarinova TV, Xu Q, Deng XX, Guo WW. Evaluation of codon biology in citrus and Poncirus trifoliata based on genomic features and frame corrected expressed sequence tags. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 20: 135-50. PMID 23315666 DOI: 10.1093/dnares/dss039  0.56
2013 Rahman F, Hassan M, Murphy D, Bolshoy A, Tatarinova T. Assessment of the database of clusters of orthologous genes (COGs) F1000research. 4. DOI: 10.7490/F1000Research.1093919.1  0.4
2013 Tatarinova TV, Sablok G. Preface Dna Methylation: Principles, Mechanisms and Challenges 0.56
2013 Tatarinova TV, Sablok G. DNA methylation: Principles, mechanisms and challenges Dna Methylation: Principles, Mechanisms and Challenges. 1-184.  0.56
2012 Bolshoy A, Tatarinova T. Methods of combinatorial optimization to reveal factors affecting gene length. Bioinformatics and Biology Insights. 6: 317-27. PMID 23300345 DOI: 10.4137/Bbi.S10525  0.56
2012 de Vere N, Rich TC, Ford CR, Trinder SA, Long C, Moore CW, Satterthwaite D, Davies H, Allainguillaume J, Ronca S, Tatarinova T, Garbett H, Walker K, Wilkinson MJ. DNA barcoding the native flowering plants and conifers of Wales. Plos One. 7: e37945. PMID 22701588 DOI: 10.1371/Journal.Pone.0037945  0.56
2012 Pérez-Quintero AL, Sablok G, Tatarinova TV, Conesa A, Kuo J, López C. Mining of miRNAs and potential targets from gene oriented clusters of transcripts sequences of the anti-malarial plant, Artemisia annua. Biotechnology Letters. 34: 737-45. PMID 22160362 DOI: 10.1007/s10529-011-0808-0  0.56
2011 Jelliffe R, Neely M, Schumitzky A, Bayard D, Van Guilder M, Botnen A, Bustad A, Laing D, Yamada W, Bartroff J, Tatarinova T. Nonparametric population modeling and Bayesian analysis. Pharmacological Research. 64: 426. PMID 21699981 DOI: 10.1016/J.Phrs.2011.04.008  0.56
2011 Sablok G, Pérez-Quintero AL, Hassan M, Tatarinova TV, López C. Artificial microRNAs (amiRNAs) engineering - On how microRNA-based silencing methods have affected current plant silencing research. Biochemical and Biophysical Research Communications. 406: 315-9. PMID 21329663 DOI: 10.1016/j.bbrc.2011.02.045  0.56
2011 Sablok G, Nayak KC, Vazquez F, Tatarinova TV. Synonymous codon usage, GC(3), and evolutionary patterns across plastomes of three pooid model species: emerging grass genome models for monocots. Molecular Biotechnology. 49: 116-28. PMID 21308422 DOI: 10.1007/s12033-011-9383-9  0.56
2010 Tatarinova TV, Alexandrov NN, Bouck JB, Feldmann KA. GC3 biology in corn, rice, sorghum and other grasses. Bmc Genomics. 11: 308. PMID 20470436 DOI: 10.1186/1471-2164-11-308  0.56
2009 Troukhan M, Tatarinova T, Bouck J, Flavell RB, Alexandrov NN. Genome-wide discovery of cis-elements in promoter sequences using gene expression. Omics : a Journal of Integrative Biology. 13: 139-51. PMID 19231992 DOI: 10.1089/Omi.2008.0034  0.56
2009 Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, Zhang H, Swaller TJ, Lu YP, Bouck J, Flavell RB, Feldmann KA. Insights into corn genes derived from large-scale cDNA sequencing. Plant Molecular Biology. 69: 179-94. PMID 18937034 DOI: 10.1007/S11103-008-9415-4  0.56
2008 Tatarinova T, Bouck J, Schumitzky A. Kullback-Leibler Markov chain Monte Carlo--a new algorithm for finite mixture analysis and its application to gene expression data. Journal of Bioinformatics and Computational Biology. 6: 727-46. PMID 18763739 DOI: 10.1142/S0219720008003710  0.56
2006 Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Molecular Biology. 60: 69-85. PMID 16463100 DOI: 10.1007/S11103-005-2564-9  0.56
2005 Schneeberger RG, Zhang K, Tatarinova T, Troukhan M, Kwok SF, Drais J, Klinger K, Orejudos F, Macy K, Bhakta A, Burns J, Subramanian G, Donson J, Flavell R, Feldmann KA. Agrobacterium T-DNA integration in Arabidopsis is correlated with DNA sequence compositions that occur frequently in gene promoter regions. Functional & Integrative Genomics. 5: 240-53. PMID 15744539 DOI: 10.1007/S10142-005-0138-1  0.56
2003 Tatarinova T, Brover V, Troukhan M, Alexandrov N. Skew in CG content near the transcription start site in Arabidopsis thaliana. Bioinformatics (Oxford, England). 19: i313-4. PMID 12855475  0.56
1994 Tatarinova TV, Rashba EI, Efros AL. Continuum excitons in the fractional-quantum-Hall-effect regime: Steps in the filling-factor dependence of the energy Physical Review B. 50: 17349-17356. DOI: 10.1103/PhysRevB.50.17349  0.56
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