Daniel B. Forger, Ph.D. - Publications

2003 New York University, New York, NY, United States 
Mathematics, Molecular Biology

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Shlizerman E, Phillips-Portillo J, Forger DB, Reppert SM. Neural Integration Underlying a Time-Compensated Sun Compass in the Migratory Monarch Butterfly. Cell Reports. PMID 27149852 DOI: 10.1016/j.celrep.2016.03.057  1
2016 Stinchcombe AR, Forger DB. An efficient method for simulation of noisy coupled multi-dimensional oscillators Journal of Computational Physics. 321: 932-946. DOI: 10.1016/j.jcp.2016.05.025  1
2015 Zhou M, Kim JK, Eng GW, Forger DB, Virshup DM. A Period2 Phosphoswitch Regulates and Temperature Compensates Circadian Period. Molecular Cell. 60: 77-88. PMID 26431025 DOI: 10.1016/j.molcel.2015.08.022  1
2015 Walch OJ, Zhang LS, Reifler AN, Dolikian ME, Forger DB, Wong KY. Characterizing and modeling the intrinsic light response of rat ganglion-cell photoreceptors. Journal of Neurophysiology. jn.00544.2015. PMID 26400257 DOI: 10.1152/jn.00544.2015  1
2015 Hannay KM, Booth V, Forger DB. Collective phase response curves for heterogeneous coupled oscillators. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 022923. PMID 26382491 DOI: 10.1103/PhysRevE.92.022923  1
2015 DeWoskin D, Myung J, Belle MD, Piggins HD, Takumi T, Forger DB. Distinct roles for GABA across multiple timescales in mammalian circadian timekeeping. Proceedings of the National Academy of Sciences of the United States of America. 112: E3911-9. PMID 26130805 DOI: 10.1073/pnas.1420753112  1
2015 Myung J, Hong S, DeWoskin D, De Schutter E, Forger DB, Takumi T. GABA-mediated repulsive coupling between circadian clock neurons in the SCN encodes seasonal time. Proceedings of the National Academy of Sciences of the United States of America. PMID 26130804 DOI: 10.1073/pnas.1421200112  1
2015 Boďová K, Paydarfar D, Forger DB. Characterizing spiking in noisy type II neurons. Journal of Theoretical Biology. 365: 40-54. PMID 25311908 DOI: 10.1016/j.jtbi.2014.09.041  1
2014 DeWoskin D, Geng W, Stinchcombe AR, Forger DB. It is not the parts, but how they interact that determines the behaviour of circadian rhythms across scales and organisms. Interface Focus. 4: 20130076. PMID 24904739 DOI: 10.1098/rsfs.2013.0076  1
2014 Goriki A, Hatanaka F, Myung J, Kim JK, Yoritaka T, Tanoue S, Abe T, Kiyonari H, Fujimoto K, Kato Y, Todo T, Matsubara A, Forger D, Takumi T. A novel protein, CHRONO, functions as a core component of the mammalian circadian clock. Plos Biology. 12: e1001839. PMID 24736997 DOI: 10.1371/journal.pbio.1001839  1
2014 Serkh K, Forger DB. Optimal schedules of light exposure for rapidly correcting circadian misalignment. Plos Computational Biology. 10: e1003523. PMID 24722195 DOI: 10.1371/journal.pcbi.1003523  1
2013 Diekman CO, Belle MD, Irwin RP, Allen CN, Piggins HD, Forger DB. Causes and consequences of hyperexcitation in central clock neurons. Plos Computational Biology. 9: e1003196. PMID 23990770 DOI: 10.1371/journal.pcbi.1003196  1
2013 Kim JK, Forger DB, Marconi M, Wood D, Doran A, Wager T, Chang C, Walton KM. Modeling and validating chronic pharmacological manipulation of circadian rhythms. Cpt: Pharmacometrics & Systems Pharmacology. 2: e57. PMID 23863866 DOI: 10.1038/psp.2013.34  1
2013 Fotiadis P, Forger DB. Modeling the effects of the circadian clock on cardiac electrophysiology. Journal of Biological Rhythms. 28: 69-78. PMID 23382593 DOI: 10.1177/0748730412469499  1
2012 Kim JK, Forger DB. A mechanism for robust circadian timekeeping via stoichiometric balance. Molecular Systems Biology. 8: 630. PMID 23212247 DOI: 10.1038/msb.2012.62  1
2012 Clay JR, Forger DB, Paydarfar D. Ionic mechanism underlying optimal stimuli for neuronal excitation: role of Na+ channel inactivation. Plos One. 7: e45983. PMID 23049913 DOI: 10.1371/journal.pone.0045983  1
2012 Kim JK, Forger DB. On the existence and uniqueness of biological clock models matching experimental data Siam Journal On Applied Mathematics. 72: 1842-1855. DOI: 10.1137/120867809  1
2011 Fleshner M, Booth V, Forger DB, Diniz Behn CG. Circadian regulation of sleep-wake behaviour in nocturnal rats requires multiple signals from suprachiasmatic nucleus. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 369: 3855-83. PMID 21893532 DOI: 10.1098/rsta.2011.0085  1
2011 Forger DB, Paydarfar D, Clay JR. Optimal stimulus shapes for neuronal excitation. Plos Computational Biology. 7: e1002089. PMID 21760759 DOI: 10.1371/journal.pcbi.1002089  1
2011 Forger DB. Signal processing in cellular clocks. Proceedings of the National Academy of Sciences of the United States of America. 108: 4281-5. PMID 21368179 DOI: 10.1073/pnas.1004720108  1
2010 Ko CH, Yamada YR, Welsh DK, Buhr ED, Liu AC, Zhang EE, Ralph MR, Kay SA, Forger DB, Takahashi JS. Emergence of noise-induced oscillations in the central circadian pacemaker. Plos Biology. 8: e1000513. PMID 20967239 DOI: 10.1371/journal.pbio.1000513  1
2010 Yamada YR, Forger DB. Multiscale complexity in the mammalian circadian clock Current Opinion in Genetics and Development. 20: 626-633. PMID 20934868 DOI: 10.1016/j.gde.2010.09.006  1
2009 Belle MD, Diekman CO, Forger DB, Piggins HD. Daily electrical silencing in the mammalian circadian clock. Science (New York, N.Y.). 326: 281-4. PMID 19815775 DOI: 10.1126/science.1169657  1
2009 Diekman CO, Forger DB. Clustering predicted by an electrophysiological model of the suprachiasmatic nucleus. Journal of Biological Rhythms. 24: 322-33. PMID 19625734 DOI: 10.1177/0748730409337601  1
2009 Dean DA, Forger DB, Klerman EB. Taking the lag out of jet lag through model-based schedule design. Plos Computational Biology. 5: e1000418. PMID 19543382 DOI: 10.1371/journal.pcbi.1000418  1
2009 Virshup DM, Forger DB. Keeping the beat in the rising heat. Cell. 137: 602-4. PMID 19450508 DOI: 10.1016/j.cell.2009.04.051  1
2009 Ninfa AJ, Atkinson MR, Forger D, Atkins S, Arps D, Selinsky S, Court D, Perry N, Mayo AE. A synthetic biology approach to understanding biological oscillations: Developing a genetic oscillator for Escherichia coli Bacterial Circadian Programs. 301-329. DOI: 10.1007/978-3-540-88431-6_17  1
2008 Clay JR, Paydarfar D, Forger DB. A simple modification of the Hodgkin and Huxley equations explains type 3 excitability in squid giant axons. Journal of the Royal Society, Interface / the Royal Society. 5: 1421-8. PMID 18544505 DOI: 10.1098/rsif.2008.0166  1
2008 Conrad E, Mayo AE, Ninfa AJ, Forger DB. Rate constants rather than biochemical mechanism determine behaviour of genetic clocks. Journal of the Royal Society, Interface / the Royal Society. 5: S9-15. PMID 18426770 DOI: 10.1098/rsif.2008.0046.focus  1
2007 Virshup DM, Eide EJ, Forger DB, Gallego M, Harnish EV. Reversible protein phosphorylation regulates circadian rhythms. Cold Spring Harbor Symposia On Quantitative Biology. 72: 413-20. PMID 18419299 DOI: 10.1101/sqb.2007.72.048  1
2007 Sim CK, Forger DB. Modeling the electrophysiology of suprachiasmatic nucleus neurons. Journal of Biological Rhythms. 22: 445-53. PMID 17876065 DOI: 10.1177/0748730407306041  1
2007 Virshup DM, Forger DB. After hours keeps clock researchers CRYing Overtime. Cell. 129: 857-9. PMID 17540165 DOI: 10.1016/j.cell.2007.05.015  1
2007 Forger D, Gonze D, Virshup D, Welsh DK. Beyond intuitive modeling: combining biophysical models with innovative experiments to move the circadian clock field forward. Journal of Biological Rhythms. 22: 200-10. PMID 17517910 DOI: 10.1177/0748730407301823  1
2006 Paydarfar D, Forger DB, Clay JR. Noisy inputs and the induction of on-off switching behavior in a neuronal pacemaker. Journal of Neurophysiology. 96: 3338-48. PMID 16956993 DOI: 10.1152/jn.00486.2006  1
2006 Gallego M, Eide EJ, Woolf MF, Virshup DM, Forger DB. An opposite role for tau in circadian rhythms revealed by mathematical modeling. Proceedings of the National Academy of Sciences of the United States of America. 103: 10618-23. PMID 16818876 DOI: 10.1073/pnas.0604511103  1
2005 Forger D, Drapeau M, Collins B, Blau J. A new model for circadian clock research? Molecular Systems Biology. 1: 2005.0014. PMID 16729049 DOI: 10.1038/msb4100019  1
2005 Indic P, Forger DB, St Hilaire MA, Dean DA, Brown EN, Kronauer RE, Klerman EB, Jewett ME. Comparison of amplitude recovery dynamics of two limit cycle oscillator models of the human circadian pacemaker. Chronobiology International. 22: 613-29. PMID 16147894 DOI: 10.1080/07420520500180371  1
2005 Forger DB, Peskin CS. Stochastic simulation of the mammalian circadian clock. Proceedings of the National Academy of Sciences of the United States of America. 102: 321-4. PMID 15626756 DOI: 10.1073/pnas.0408465102  1
2005 Paydarfar D, Forger DB, Clay JR. Starting and stopping a bistable pacemaker: Stochastic stimulation identifies critical perturbations Aip Conference Proceedings. 780: 571-574. DOI: 10.1063/1.2036817  1
2004 Forger DB, Peskin CS. Model based conjectures on mammalian clock controversies. Journal of Theoretical Biology. 230: 533-9. PMID 15363674 DOI: 10.1016/j.jtbi.2004.04.041  1
2004 Forger DB, Paydarfar D. Starting, stopping, and resetting biological oscillators: in search of optimum perturbations. Journal of Theoretical Biology. 230: 521-32. PMID 15363673 DOI: 10.1016/j.jtbi.2004.04.043  1
2003 Forger DB, Dean DA, Gurdziel K, Leloup JC, Lee C, Von Gall C, Etchegaray JP, Kronauer RE, Goldbeter A, Peskin CS, Jewett ME, Weaver DR. Development and validation of computational models for mammalian circadian oscillators. Omics : a Journal of Integrative Biology. 7: 387-400. PMID 14683611 DOI: 10.1089/153623103322637698  1
2003 Forger DB, Peskin CS. A detailed predictive model of the mammalian circadian clock. Proceedings of the National Academy of Sciences of the United States of America. 100: 14806-11. PMID 14657377 DOI: 10.1073/pnas.2036281100  1
2002 Forger DB, Kronauer RE. Reconciling mathematical models of biological clocks by averaging on approximate manifolds Siam Journal On Applied Mathematics. 62: 1281-1296. DOI: 10.1137/S0036139900373587  1
1999 Forger DB, Jewett ME, Kronauer RE. A simpler model of the human circadian pacemaker. Journal of Biological Rhythms. 14: 532-7. PMID 10643750  1
1999 Kronauer RE, Forger DB, Jewett ME. Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the phototopic range. Journal of Biological Rhythms. 14: 500-15. PMID 10643747  1
1999 Jewett ME, Forger DB, Kronauer RE. Revised limit cycle oscillator model of human circadian pacemaker. Journal of Biological Rhythms. 14: 493-9. PMID 10643746  1
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