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Srinivas Chakravarthy, Ph.D. - Publications

Affiliations: 
Illinois Institute of Technology, Chicago, IL, United States 
 2004 Colorado State University, Fort Collins, CO 
Area:
Biochemistry, Molecular Biology
Website:
https://science.iit.edu/people/faculty/srinivas-chakravarthy
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Manne K, Chattopadhyay D, Agarwal V, Blom AM, Khare B, Chakravarthy S, Chang C, Ton-That H, Narayana SVL. Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin. Acta Crystallographica. Section D, Structural Biology. 76: 759-770. PMID 32744258 DOI: 10.1107/S2059798320008116  0.335
2020 Monsen RC, DeLeeuw L, Dean WL, Gray RD, Sabo TM, Chakravarthy S, Chaires JB, Trent JO. The hTERT core promoter forms three parallel G-quadruplexes. Nucleic Acids Research. PMID 32083666 DOI: 10.1093/Nar/Gkaa107  0.371
2019 Das S, Malaby AW, Nawrotek A, Zhang W, Zeghouf M, Maslen S, Skehel M, Chakravarthy S, Irving TC, Bilsel O, Cherfils J, Lambright DG. Structural Organization and Dynamics of Homodimeric Cytohesin Family Arf GTPase Exchange Factors in Solution and on Membranes. Structure (London, England : 1993). PMID 31601460 DOI: 10.1016/J.Str.2019.09.007  0.3
2019 Fang X, Osipiuk J, Chakravarthy S, Yuan M, Menzer WM, Nissen D, Liang P, Raba DA, Tuz K, Howard AJ, Joachimiak A, Minh DDL, Juarez O. Conserved residue His-257 of flavin transferase ApbE plays a critical role in substrate binding and catalysis. The Journal of Biological Chemistry. PMID 31350338 DOI: 10.1074/Jbc.Ra119.008261  0.312
2019 Halloran KT, Wang Y, Arora K, Chakravarthy S, Irving TC, Bilsel O, Brooks CL, Matthews CR. Frustration and folding of a TIM barrel protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 31346089 DOI: 10.1073/Pnas.1900880116  0.321
2018 Garland-Kuntz EE, Vago FS, Sieng M, Van Camp M, Chakravarthy S, Blaine A, Corpstein C, Jiang W, Lyon AM. Direct observation of conformational dynamics of the PH domain in phospholipases Cε and β may contribute to subfamily-specific roles in regulation. The Journal of Biological Chemistry. PMID 30242131 DOI: 10.1074/Jbc.Ra118.003656  0.347
2018 Korasick DA, White TA, Chakravarthy S, Tanner JJ. NAD Promotes Assembly of the Active Tetramer of Aldehyde Dehydrogenase 7A1. Febs Letters. PMID 30184263 DOI: 10.1002/1873-3468.13238  0.338
2018 Huang W, Peng Y, Kiselar J, Zhao X, Albaqami A, Mendez D, Chen Y, Chakravarthy S, Gupta S, Ralston C, Kao HY, Chance MR, Yang S. Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains. Nature Communications. 9: 3520. PMID 30166540 DOI: 10.1038/S41467-018-06034-2  0.356
2018 Korasick DA, Campbell AC, Christgen SL, Chakravarthy S, White TA, Becker DF, Tanner JJ. Redox Modulation of Oligomeric State in Proline Utilization A. Biophysical Journal. 114: 2833-2843. PMID 29925020 DOI: 10.1016/J.Bpj.2018.04.046  0.319
2018 Sharma N, Chakravarthy S, Longley MJ, Copeland WC, Prakash A. The C-terminal tail of the NEIL1 DNA glycosylase interacts with the human mitochondrial single-stranded DNA binding protein. Dna Repair. 65: 11-19. PMID 29522991 DOI: 10.1016/J.Dnarep.2018.02.012  0.371
2018 Holcomb J, Doughan M, Spellmon N, Lewis B, Perry E, Zhang Y, Nico L, Wan J, Chakravarthy S, Shang W, Miao Q, Stemmler T, Yang Z. SAXS analysis of a soluble cytosolic NgBR construct including extracellular and transmembrane domains. Plos One. 13: e0191371. PMID 29346419 DOI: 10.1371/Journal.Pone.0191371  0.316
2018 Malaby AW, Das S, Chakravarthy S, Irving TC, Bilsel O, Lambright DG. Structural Dynamics Control Allosteric Activation of Cytohesin Family Arf GTPase Exchange Factors. Structure (London, England : 1993). 26: 106-117.e6. PMID 29276036 DOI: 10.1016/J.Str.2017.11.019  0.316
2018 Bowerman S, Chakravarthy S, Wereszczynski J. Solution Ensemble of the macroH2A Nucleosome with Linker Sequence Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.1415  0.3
2017 Fang X, Liang P, Raba DA, Rosas-Lemus M, Chakravarthy S, Tuz K, Juárez O. Kinetic characterization of Vibrio cholerae ApbE: Substrate specificity and regulatory mechanisms. Plos One. 12: e0186805. PMID 29065131 DOI: 10.1371/Journal.Pone.0186805  0.314
2017 Schnicker NJ, Razzaghi M, Guha Thakurta S, Chakravarthy S, Dey M. Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu. Biochemistry. PMID 28981257 DOI: 10.1021/Acs.Biochem.7B00601  0.354
2017 Qiu Y, Levendosky RF, Chakravarthy S, Patel A, Bowman GD, Myong S. The Chd1 Chromatin Remodeler Shifts Nucleosomal DNA Bidirectionally as a Monomer. Molecular Cell. PMID 28943314 DOI: 10.1016/J.Molcel.2017.08.018  0.582
2017 Li Y, Zhao Y, Su M, Glover K, Chakravarthy S, Colbert CL, Levine B, Sinha SC. Structural insights into the interaction of the conserved mammalian proteins GAPR-1 and Beclin 1, a key autophagy protein. Acta Crystallographica. Section D, Structural Biology. 73: 775-792. PMID 28876241 DOI: 10.1107/S0108767318096678  0.351
2017 Glover K, Li Y, Mukhopadhyay S, Leuthner Z, Chakravarthy S, Colbert CL, Sinha SC. Structural transitions in conserved, ordered Beclin 1 domains essential to regulating autophagy. The Journal of Biological Chemistry. PMID 28798234 DOI: 10.1074/Jbc.M117.804195  0.35
2017 Chassé MH, Muthurajan UM, Clark NJ, Kramer MA, Chakravarthy S, Irving T, Luger K. Biochemical and Biophysical Methods for Analysis of Poly(ADP-Ribose) Polymerase 1 and Its Interactions with Chromatin. Methods in Molecular Biology (Clifton, N.J.). 1608: 231-253. PMID 28695514 DOI: 10.1007/978-1-4939-6993-7_16  0.636
2017 O'Neil PK, Richardson LGL, Paila YD, Piszczek G, Chakravarthy S, Noinaj N, Schnell D. The POTRA domains of Toc75 exhibit chaperone-like function to facilitate import into chloroplasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 28559331 DOI: 10.1073/Pnas.1621179114  0.307
2017 Su M, Li Y, Wyborny S, Neau D, Chakravarthy S, Levine B, Colbert CL, Sinha SC. BECN2 interacts with ATG14 through a metastable coiled-coil to mediate autophagy. Protein Science : a Publication of the Protein Society. PMID 28218432 DOI: 10.1002/Pro.3140  0.305
2017 Wang L, Chakravarthy S, Verdine GL. Structural Basis for the Lesion-scanning Mechanism of the Bacterial MutY DNA Glycosylase. The Journal of Biological Chemistry. PMID 28130451 DOI: 10.1074/Jbc.M116.757039  0.369
2017 Arleth L, Jensen GV, Huda P, Skou S, Shang W, Chakravarthy S. Combined SAXS and microfludics for time-resolved structural studies of biomolecules Acta Crystallographica Section A. 73. DOI: 10.1107/S2053273317089641  0.306
2017 Kathuria SV, Bilsel O, Chakravarthy S, Matthews CR. Microfluidic Turbulent Mixers, Time Resolved SAXS and Folding Intermediates of CheY Biophysical Journal. 112: 61a. DOI: 10.1016/J.Bpj.2016.11.367  0.31
2016 Dobosz-Bartoszek M, Pinkerton MH, Otwinowski Z, Chakravarthy S, Söll D, Copeland PR, Simonović M. Crystal structures of the human elongation factor eEFSec suggest a non-canonical mechanism for selenocysteine incorporation. Nature Communications. 7: 12941. PMID 27708257 DOI: 10.1038/Ncomms12941  0.35
2016 Mei Y, Su M, Sanishvili R, Chakravarthy S, Colbert CL, Sinha SC. Identification of BECN1 and ATG14 coiled-coil interface residues important for starvation-induced autophagy. Biochemistry. PMID 27383850 DOI: 10.1021/Acs.Biochem.6B00246  0.355
2016 Muthurajan U, Mattiroli F, Bergeron S, Zhou K, Gu Y, Chakravarthy S, Dyer P, Irving T, Luger K. In Vitro Chromatin Assembly: Strategies and Quality Control. Methods in Enzymology. 573: 3-41. PMID 27372747 DOI: 10.1016/bs.mie.2016.01.002  0.761
2016 Mei Y, Ramanathan A, Glover K, Stanley C, Sanishvili R, Chakravarthy S, Yang Z, Colbert CL, Sinha S. Conformational Flexibility Enables Function of a BECN1 Region Essential for Starvation-Mediated Autophagy. Biochemistry. PMID 26937551 DOI: 10.1021/Acs.Biochem.5B01264  0.346
2015 Jensen JL, Balbo A, Neau DB, Chakravarthy S, Zhao H, Sinha SC, Colbert CL. Mechanistic implications of the unique structural features and dimerization of the cytoplasmic domain of the Pseudomonas sigma regulator, PupR. Biochemistry. PMID 26313375 DOI: 10.1021/Acs.Biochem.5B00826  0.354
2015 Hu T, Yeh JE, Pinello L, Jacob J, Chakravarthy S, Yuan GC, Chopra R, Frank DA. Impact of the N-terminal domain of STAT3 in STAT3-dependent transcriptional activity. Molecular and Cellular Biology. PMID 26169829 DOI: 10.1128/Mcb.00060-15  0.355
2015 Klosowiak J, Focia P, Chakravarthy S, Freymann D, Rice S. Structures of Human Miro1 Reveal Conformational Changes Biophysical Journal. 108: 155a. DOI: 10.1016/J.Bpj.2014.11.853  0.314
2015 Levendosky R, Horvath K, Chakravarthy S, Hobson M, Bowman G. Using FRET to Monitor Nucleosome Movement by the Chd1 Chromatin Remodeler Biophysical Journal. 108. DOI: 10.1016/J.Bpj.2014.11.2958  0.443
2015 Heinrich F, Nanda H, Chakravarthy S, Harishchandra RK, Gericke A, Ross AH, Lösche M. Dimerization of the PTEN Tumor Suppressor and its Structural Characterization by SAXS Biophysical Journal. 108: 40a. DOI: 10.1016/J.Bpj.2014.11.248  0.329
2014 Nobrega RP, Arora K, Kathuria SV, Graceffa R, Barrea RA, Guo L, Chakravarthy S, Bilsel O, Irving TC, Brooks CL, Matthews CR. Modulation of frustration in folding by sequence permutation. Proceedings of the National Academy of Sciences of the United States of America. 111: 10562-7. PMID 25002512 DOI: 10.1073/Pnas.1324230111  0.306
2013 Klosowiak JL, Focia PJ, Chakravarthy S, Landahl EC, Freymann DM, Rice SE. Structural coupling of the EF hand and C-terminal GTPase domains in the mitochondrial protein Miro. Embo Reports. 14: 968-74. PMID 24071720 DOI: 10.1038/Embor.2013.151  0.336
2013 Patel A, Chakravarthy S, Morrone S, Nodelman IM, McKnight JN, Bowman GD. Decoupling nucleosome recognition from DNA binding dramatically alters the properties of the Chd1 chromatin remodeler. Nucleic Acids Research. 41: 1637-48. PMID 23275572 DOI: 10.1093/Nar/Gks1440  0.568
2012 Chakravarthy S, Patel A, Bowman GD. The basic linker of macroH2A stabilizes DNA at the entry/exit site of the nucleosome. Nucleic Acids Research. 40: 8285-95. PMID 22753032 DOI: 10.1093/Nar/Gks645  0.535
2010 Chakravarthy S, Sternberg SH, Kellenberger CA, Doudna JA. Substrate-specific kinetics of Dicer-catalyzed RNA processing. Journal of Molecular Biology. 404: 392-402. PMID 20932845 DOI: 10.1016/J.Jmb.2010.09.030  0.67
2008 Clapier CR, Chakravarthy S, Petosa C, Fernández-Tornero C, Luger K, Müller CW. Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimer. Proteins. 71: 1-7. PMID 17957772 DOI: 10.1002/Prot.21720  0.729
2006 Chakravarthy S, Luger K. The histone variant macro-H2A preferentially forms "hybrid nucleosomes". The Journal of Biological Chemistry. 281: 25522-31. PMID 16803903 DOI: 10.1074/Jbc.M602258200  0.686
2005 Chakravarthy S, Gundimella SK, Caron C, Perche PY, Pehrson JR, Khochbin S, Luger K. Structural characterization of the histone variant macroH2A. Molecular and Cellular Biology. 25: 7616-24. PMID 16107708 DOI: 10.1128/Mcb.25.17.7616-7624.2005  0.681
2005 Chakravarthy S, Park YJ, Chodaparambil J, Edayathumangalam RS, Luger K. Structure and dynamic properties of nucleosome core particles. Febs Letters. 579: 895-8. PMID 15680970 DOI: 10.1016/J.Febslet.2004.11.030  0.735
2004 Chakravarthy S, Bao Y, Roberts VA, Tremethick D, Luger K. Structural characterization of histone H2A variants. Cold Spring Harbor Symposia On Quantitative Biology. 69: 227-34. PMID 16117653 DOI: 10.1101/Sqb.2004.69.227  0.776
2004 Black BE, Foltz DR, Chakravarthy S, Luger K, Woods VL, Cleveland DW. Structural determinants for generating centromeric chromatin. Nature. 430: 578-82. PMID 15282608 DOI: 10.1038/Nature02766  0.683
2004 Dyer PN, Edayathumangalam RS, White CL, Bao Y, Chakravarthy S, Muthurajan UM, Luger K. Reconstitution of nucleosome core particles from recombinant histones and DNA. Methods in Enzymology. 375: 23-44. PMID 14870657 DOI: 10.1016/S0076-6879(03)75002-2  0.75
2004 Chakravarthy S, Nusinow D, Plath K, Perche P, Khochbin S, Panning B, Luger K. MACRO-H2A: A STRUCTURALLY AND FUNCTIONALLY DIVERSE HISTONE VARIANT Cold Spring Harbor Symposia On Quantitative Biology. 69: 1-1. DOI: 10.1101/Sqb.2004.69.S46  0.678
2003 Muthurajan UM, Park YJ, Edayathumangalam RS, Suto RK, Chakravarthy S, Dyer PN, Luger K. Structure and dynamics of nucleosomal DNA. Biopolymers. 68: 547-56. PMID 12666179 DOI: 10.1002/Bip.10317  0.78
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