Rebecca W. Doerge - Publications

Purdue University, West Lafayette, IN, United States 
Statistics, Biostatistics Biology

101 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Yao H, Srivastava S, Swyers N, Han F, Doerge RW, Birchler JA. Inbreeding Depression in Genotypically Matched Diploid and Tetraploid Maize. Frontiers in Genetics. 11: 564928. PMID 33329701 DOI: 10.3389/fgene.2020.564928  1
2020 Chen X, Doerge RW. Comments on Dr. Aniket Biswas' Letter to the Editor. Biometrical Journal. Biometrische Zeitschrift. PMID 32776371 DOI: 10.1002/Bimj.202000224  1
2020 Chen X, Doerge RW, Sarkar SK. A weighted FDR procedure under discrete and heterogeneous null distributions. Biometrical Journal. Biometrische Zeitschrift. PMID 32367597 DOI: 10.1002/Bimj.201900216  1
2018 Chen X, Doerge RW, Heyse JF. Multiple testing with discrete data: Proportion of true null hypotheses and two adaptive FDR procedures. Biometrical Journal. Biometrische Zeitschrift. PMID 29748972 DOI: 10.1002/Bimj.201700157  1
2018 Oh J, Zheng F, Doerge RW, Chun H. Kernel partial correlation: a novel approach to capturing conditional independence in graphical models for noisy data Journal of Applied Statistics. 45: 2677-2696. DOI: 10.1080/02664763.2018.1437123  0.52
2017 Cheng R, Doerge RW, Borevitz J. Novel Resampling Improves Statistical Power for Multiple-Trait QTL Mapping. G3 (Bethesda, Md.). PMID 28064191 DOI: 10.1534/G3.116.037531  0.72
2016 Solhaug E, Ihinger J, Jost M, Gamboa V, Marchant B, Bradford D, Doerge RW, Tyagi A, Replogle A, Madlung A. Environmental regulation of heterosis in the allopolyploid Arabidopsis suecica. Plant Physiology. PMID 26896394 DOI: 10.1104/Pp.16.00052  1
2014 Pardo I, Lillemoe HA, Blosser RJ, Choi M, Sauder CA, Doxey DK, Mathieson T, Hancock BA, Baptiste D, Atale R, Hickenbotham M, Zhu J, Glasscock J, Storniolo AM, Zheng F, ... Doerge RW, et al. Next-generation transcriptome sequencing of the premenopausal breast epithelium using specimens from a normal human breast tissue bank. Breast Cancer Research : Bcr. 16: R26. PMID 24636070 DOI: 10.1186/Bcr3627  1
2014 Baumann DD, Doerge RW. MAGI: Methylation analysis using genome information. Epigenetics. 9: 698-703. PMID 24589664 DOI: 10.4161/Epi.28322  1
2014 Lin F, Zhao M, Baumann DD, Ping J, Sun L, Liu Y, Zhang B, Tang Z, Hughes E, Doerge RW, Hughes TJ, Ma J. Molecular response to the pathogen Phytophthora sojae among ten soybean near isogenic lines revealed by comparative transcriptomics. Bmc Genomics. 15: 18. PMID 24410936 DOI: 10.1186/1471-2164-15-18  1
2014 Baumann DD, Doerge RW. Robust adjustment of sequence tag abundance. Bioinformatics (Oxford, England). 30: 601-5. PMID 24108185 DOI: 10.1093/Bioinformatics/Btt575  1
2013 Sardesai N, Lee LY, Chen H, Yi H, Olbricht GR, Stirnberg A, Jeffries J, Xiong K, Doerge RW, Gelvin SB. Cytokinins secreted by Agrobacterium promote transformation by repressing a plant myb transcription factor. Science Signaling. 6: ra100. PMID 24255177 DOI: 10.1126/Scisignal.2004518  1
2013 Cheng R, Borevitz J, Doerge RW. Selecting informative traits for multivariate quantitative trait locus mapping helps to gain optimal power. Genetics. 195: 683-91. PMID 23979571 DOI: 10.1534/Genetics.113.155937  1
2013 Billingsley CN, Allen JR, Baumann DD, Deitz SL, Blazek JD, Newbauer A, Darrah A, Long BC, Young B, Clement M, Doerge RW, Roper RJ. Non-trisomic homeobox gene expression during craniofacial development in the Ts65Dn mouse model of Down syndrome. American Journal of Medical Genetics. Part A. 161: 1866-74. PMID 23843306 DOI: 10.1002/Ajmg.A.36006  1
2013 Roulin A, Auer PL, Libault M, Schlueter J, Farmer A, May G, Stacey G, Doerge RW, Jackson SA. The fate of duplicated genes in a polyploid plant genome. The Plant Journal : For Cell and Molecular Biology. 73: 143-53. PMID 22974547 DOI: 10.1111/Tpj.12026  1
2013 Srivastava S, Doerge RW. Purdue Statistics: A journey through time Strength in Numbers: the Rising of Academic Statistics Departments in the U. S.. 229-242. DOI: 10.1007/978-1-4614-3649-2_17  1
2012 An L, Doerge RW. Dynamic clustering of gene expression. Isrn Bioinformatics. 2012: 537217. PMID 25969750 DOI: 10.5402/2012/537217  0.76
2012 Auer PL, Srivastava S, Doerge RW. Differential expression--the next generation and beyond. Briefings in Functional Genomics. 11: 57-62. PMID 22210853 DOI: 10.1093/Bfgp/Elr041  1
2012 Olbricht GR, Craig BA, Doerge RW. Incorporating genomic annotation into a Hidden Markov model for DNA methylation tiling array data Statistical Applications in Genetics and Molecular Biology. 11. DOI: 10.1515/1544-6115.1775  1
2012 Rau A, Jaffrézic F, Foulley JL, Doerge RW. Reverse engineering gene regulatory networks using approximate Bayesian computation Statistics and Computing. 22: 1257-1271. DOI: 10.1007/S11222-011-9309-1  1
2011 Auer PL, Doerge RW. A two-stage poisson model for testing RNA-Seq data Statistical Applications in Genetics and Molecular Biology. 10. DOI: 10.2202/1544-6115.1627  1
2010 Yu L, Doerge R. A semi-nonparametric mixture model for selecting functionally consistent proteins. Bmc Bioinformatics. 11: 486. PMID 20920204 DOI: 10.1186/1471-2105-11-486  1
2010 Long AA, Mahapatra CT, Woodruff EA, Rohrbough J, Leung HT, Shino S, An L, Doerge RW, Metzstein MM, Pak WL, Broadie K. The nonsense-mediated decay pathway maintains synapse architecture and synaptic vesicle cycle efficacy. Journal of Cell Science. 123: 3303-15. PMID 20826458 DOI: 10.1242/Jcs.069468  1
2010 Auer PL, Doerge RW. Statistical design and analysis of RNA sequencing data. Genetics. 185: 405-16. PMID 20439781 DOI: 10.1534/Genetics.110.114983  0.4
2010 Pignatta D, Dilkes BP, Yoo SY, Henry IM, Madlung A, Doerge RW, Jeffrey Chen Z, Comai L. Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. The New Phytologist. 186: 194-206. PMID 20409178 DOI: 10.1111/J.1469-8137.2010.03198.X  1
2010 Rau A, Jaffrézic F, Foulley JL, Doerge RW. An empirical Bayesian method for estimating biological networks from temporal microarray data. Statistical Applications in Genetics and Molecular Biology. 9: Article 9. PMID 20196759 DOI: 10.2202/1544-6115.1513  1
2010 Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. Gene expression analysis at the intersection of ploidy and hybridity in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 341-53. PMID 19657617 DOI: 10.1007/S00122-009-1113-3  1
2010 Auer PL, Doerge RW. Statistical design and analysis of RNA sequencing data Genetics. 185: 405-416. DOI: 10.1534/genetics.110.114983  1
2009 Gaeta RT, Yoo SY, Pires JC, Doerge RW, Chen ZJ, Osborn TC. Analysis of gene expression in resynthesized Brassica napus Allopolyploids using arabidopsis 70mer oligo microarrays. Plos One. 4: e4760. PMID 19274085 DOI: 10.1371/Journal.Pone.0004760  1
2009 Yoo SY, Doerge RW. Integrating epigenomic results Epigenomics. 37-53. DOI: 10.1007/978-1-4020-9187-2_3  1
2008 Jiang H, Doerge RW. Estimating the proportion of true null hypotheses for multiple comparisons. Cancer Informatics. 6: 25-32. PMID 19259400 DOI: 10.4137/Cin.S0  1
2008 Tanurdzic M, Vaughn MW, Jiang H, Lee TJ, Slotkin RK, Sosinski B, Thompson WF, Doerge RW, Martienssen RA. Epigenomic consequences of immortalized plant cell suspension culture. Plos Biology. 6: 2880-95. PMID 19071958 DOI: 10.1371/Journal.Pbio.0060302  1
2008 Doerge RW. Proper experimental design and sound statistical inference win every time: A commentary on 'Statistical design and the analysis of gene expression microarray data' by M. Kathleen Kerr and Gary A. Churchill Genetics Research. 89: 505-507. PMID 18976540 DOI: 10.1017/S0016672308009725  1
2008 Jones PA, Archer TK, Baylin SB, Beck S, Berger S, Bernstein BE, Carpten JD, Clark SJ, Costello JF, Doerge RW, Esteller M, Feinberg AP, Gingeras TR, Greally JM, Henikoff S, et al. Moving AHEAD with an international human epigenome project Nature. 454: 711-715. PMID 18685699 DOI: 10.1038/454711A  1
2008 Leung HT, Tseng-Crank J, Kim E, Mahapatra C, Shino S, Zhou Y, An L, Doerge RW, Pak WL. DAG lipase activity is necessary for TRP channel regulation in Drosophila photoreceptors. Neuron. 58: 884-96. PMID 18579079 DOI: 10.1016/J.Neuron.2008.05.001  1
2008 Long AA, Kim E, Leung HT, Woodruff E, An L, Doerge RW, Pak WL, Broadie K. Presynaptic calcium channel localization and calcium-dependent synaptic vesicle exocytosis regulated by the Fuseless protein. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 3668-82. PMID 18385325 DOI: 10.1523/Jneurosci.5553-07.2008  1
2008 Bogdan M, Frommlet F, Biecek P, Cheng R, Ghosh JK, Doerge RW. Extending the modified bayesian information criterion (mBIC) to dense markers and multiple interval mapping. Biometrics. 64: 1162-9. PMID 18266892 DOI: 10.1111/J.1541-0420.2008.00989.X  1
2008 Churchill GA, Doerge RW. Naive application of permutation testing leads to inflated type I error rates Genetics. 178: 609-610. PMID 18202402 DOI: 10.1534/Genetics.107.074609  1
2007 Ordway JM, Budiman MA, Korshunova Y, Maloney RK, Bedell JA, Citek RW, Bacher B, Peterson S, Rohlfing T, Hall J, Brown R, Lakey N, Doerge RW, Martienssen RA, Leon J, et al. Identification of novel high-frequency DNA methylation changes in breast cancer. Plos One. 2: e1314. PMID 18091988 DOI: 10.1371/Journal.Pone.0001314  1
2007 Zhao J, Wang J, An L, Doerge RW, Chen ZJ, Grau CR, Meng J, Osborn TC. Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. Planta. 227: 13-24. PMID 17665211 DOI: 10.1007/S00425-007-0586-Z  1
2007 van Leeuwen H, Kliebenstein DJ, West MA, Kim K, van Poecke R, Katagiri F, Michelmore RW, Doerge RW, St Clair DA. Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid. The Plant Cell. 19: 2099-110. PMID 17630278 DOI: 10.1105/Tpc.107.050641  1
2007 Vaughn MW, Tanurdzić M, Lippman Z, Jiang H, Carrasquillo R, Rabinowicz PD, Dedhia N, McCombie WR, Agier N, Bulski A, Colot V, Doerge RW, Martienssen RA. Epigenetic natural variation in Arabidopsis thaliana. Plos Biology. 5: e174. PMID 17579518 DOI: 10.1371/Journal.Pbio.0050174  1
2007 West MA, Kim K, Kliebenstein DJ, van Leeuwen H, Michelmore RW, Doerge RW, St Clair DA. Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics. 175: 1441-50. PMID 17179097 DOI: 10.1534/Genetics.106.064972  1
2007 Doerge RW. Statistical advances in functional genomics Genomics-Assisted Crop Improvement. 1: 315-332. DOI: 10.1007/978-1-4020-6295-7_14  1
2006 Jiang H, Doerge RW. A two-step multiple comparison procedure for a large number of tests and multiple treatments. Statistical Applications in Genetics and Molecular Biology. 5: Article28. PMID 17402912 DOI: 10.2202/1544-6115.1223  1
2006 Ordway JM, Bedell JA, Citek RW, Nunberg A, Garrido A, Kendall R, Stevens JR, Cao D, Doerge RW, Korshunova Y, Holemon H, McPherson JD, Lakey N, Leon J, Martienssen RA, et al. Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets. Carcinogenesis. 27: 2409-23. PMID 16952911 DOI: 10.1093/Carcin/Bgl161  1
2006 Kliebenstein DJ, West MA, van Leeuwen H, Loudet O, Doerge RW, St Clair DA. Identification of QTLs controlling gene expression networks defined a priori. Bmc Bioinformatics. 7: 308. PMID 16780591 DOI: 10.1186/1471-2105-7-308  1
2006 West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW. High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Research. 16: 787-95. PMID 16702412 DOI: 10.1101/Gr.5011206  1
2006 Teuscher C, Doerge RW, Fillmore PD, Blankenhorn EP. eae36, a locus on mouse chromosome 4, controls susceptibility to experimental allergic encephalomyelitis in older mice and mice immunized in the winter. Genetics. 172: 1147-53. PMID 16299394 DOI: 10.1534/Genetics.105.049049  1
2006 Kliebenstein DJ, West MA, van Leeuwen H, Kim K, Doerge RW, Michelmore RW, St Clair DA. Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics. 172: 1179-89. PMID 16204207 DOI: 10.1534/Genetics.105.049353  1
2006 Wang J, Tian L, Lee HS, Wei NE, Jiang H, Watson B, Madlung A, Osborn TC, Doerge RW, Comai L, Chen ZJ. Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics. 172: 507-17. PMID 16172500 DOI: 10.1534/Genetics.105.047894  1
2005 Stevens JR, Doerge RW. Meta-analysis combines affymetrix microarray results across laboratories. Comparative and Functional Genomics. 6: 116-22. PMID 18629222 DOI: 10.1002/Cfg.460  1
2005 Bogdan M, Doerge RW. Biased estimators of quantitative trait locus heritability and location in interval mapping. Heredity. 95: 476-84. PMID 16189542 DOI: 10.1038/Sj.Hdy.6800747  1
2005 Munneke B, Schlauch KA, Simonsen KL, Beavis WD, Doerge RW. Adding confidence to gene expression clustering. Genetics. 170: 2003-11. PMID 15944369 DOI: 10.1534/Genetics.104.031500  1
2005 Martienssen RA, Doerge RW, Colot V. Epigenomic mapping in Arabidopsis using tiling microarrays Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 13: 299-308. PMID 15868423 DOI: 10.1007/S10577-005-1507-2  1
2005 Wang J, Lee JJ, Tian L, Lee HS, Chen M, Rao S, Wei EN, Doerge RW, Comai L, Chen ZJ. Methods for genome-wide analysis of gene expression changes in polyploids. Methods in Enzymology. 395: 570-96. PMID 15865985 DOI: 10.1016/S0076-6879(05)95030-1  1
2005 Coffman CJ, Doerge RW, Simonsen KL, Nichols KM, Duarte CK, Wolfinger RD, McIntyre LM. Model selection in binary trait locus mapping. Genetics. 170: 1281-97. PMID 15834149 DOI: 10.1534/Genetics.104.033910  1
2005 Stevens JR, Doerge RW. Combining Affymetrix microarray results. Bmc Bioinformatics. 6: 57. PMID 15774008 DOI: 10.1186/1471-2105-6-57  1
2005 Cao D, Craig BA, Doerge RW. A model selection-based interval-mapping method for autopolyploids. Genetics. 169: 2371-82. PMID 15687274 DOI: 10.1534/Genetics.104.035410  1
2005 Bradley KC, Boulware MB, Jiang H, Doerge RW, Meisel RL, Mermelstein PG. Changes in gene expression within the nucleus accumbens and striatum following sexual experience. Genes, Brain, and Behavior. 4: 31-44. PMID 15660666 DOI: 10.1111/J.1601-183X.2004.00093.X  1
2005 Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, Doerge RW, Martienssen R, Comai L. Genomic changes in synthetic Arabidopsis polyploids. The Plant Journal : For Cell and Molecular Biology. 41: 221-30. PMID 15634199 DOI: 10.1111/J.1365-313X.2004.02297.X  1
2005 Tian L, Fong MP, Wang JJ, Wei NE, Jiang H, Doerge RW, Chen ZJ. Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development. Genetics. 169: 337-45. PMID 15371352 DOI: 10.1534/Genetics.104.033142  1
2005 Tanurdžić M, Doerge R, Martienssen R. Microarrays: Design, analysis, and applications in functional genomics Archive of Oncology. 13: 124-125. DOI: 10.2298/A000503124T  0.32
2005 Kim K, West MAL, Michelmore RW, St. Clair DA, Doerge RW. Old methods for new ideas: Genetic dissection of the determinants of gene expression levels Genome Exploitation: Data Mining the Genome. 89-107. DOI: 10.1007/0-387-24187-6_7  1
2005 Leebens-Mack J, Soltis DE, Soltis PS. Plant reproductive genomics at the Plant and Animal Genome Conference: Conference Papers Comparative and Functional Genomics. 6: 159-169. DOI: 10.1002/Cfg.V6:3  0.32
2004 Jeffrey Chen Z, Wang J, Tian L, Lee HS, Wang JJ, Chen M, Lee JJ, Josefsson C, Madlung A, Watson B, Lippman Z, Vaughn M, Chris Pires J, Colot V, Doerge RW, et al. The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects. Biological Journal of the Linnean Society. Linnean Society of London. 82: 689-700. PMID 18079994 DOI: 10.1111/J.1095-8312.2004.00351.X  1
2004 Lee HS, Wang J, Tian L, Jiang H, Black MA, Madlung A, Watson B, Lukens L, Pires JC, Wang JJ, Comai L, Osborn TC, Doerge RW, Chen ZJ. Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species. Plant Biotechnology Journal. 2: 45-57. PMID 17166142 DOI: 10.1046/J.1467-7652.2003.00048.X  1
2004 Lippman Z, Gendrel AV, Black M, Vaughn MW, Dedhia N, McCombie WR, Lavine K, Mittal V, May B, Kasschau KD, Carrington JC, Doerge RW, Colot V, Martienssen R. Role of transposable elements in heterochromatin and epigenetic control. Nature. 430: 471-6. PMID 15269773 DOI: 10.1038/Nature02651  1
2004 Bogdan M, Ghosh JK, Doerge RW. Modifying the Schwarz Bayesian information criterion to locate multiple interacting quantitative trait loci. Genetics. 167: 989-99. PMID 15238547 DOI: 10.1534/Genetics.103.021683  1
2004 Cao D, Osborn TC, Doerge RW. Correct estimation of preferential chromosome pairing in autotetraploids. Genome Research. 14: 459-62. PMID 14962986 DOI: 10.1101/Gr.1596604  1
2003 Abiola O, Angel JM, Avner P, Bachmanov AA, Belknap JK, Bennett B, Blankenhorn EP, Blizard DA, Bolivar V, Brockmann GA, Buck KJ, Bureau JF, Casley WL, Chesler EJ, Cheverud JM, ... ... Doerge RW, et al. The nature and identification of quantitative trait loci: a community's view. Nature Reviews. Genetics. 4: 911-6. PMID 14634638 DOI: 10.1038/Nrg1206  1
2003 Veena, Jiang H, Doerge RW, Gelvin SB. Transfer of T-DNA and Vir proteins to plant cells by Agrobacterium tumefaciens induces expression of host genes involved in mediating transformation and suppresses host defense gene expression. The Plant Journal : For Cell and Molecular Biology. 35: 219-36. PMID 12848827 DOI: 10.1046/J.1365-313X.2003.01796.X  1
2003 Coffman CJ, Doerge RW, Wayne ML, McIntyre LM. Intersection tests for single marker QTL analysis can be more powerful than two marker QTL analysis. Bmc Genetics. 4: 10. PMID 12816551 DOI: 10.1186/1471-2156-4-10  1
2003 Butterfield RJ, Roper RJ, Rhein DM, Melvold RW, Haynes L, Ma RZ, Doerge RW, Teuscher C. Sex-specific quantitative trait loci govern susceptibility to Theiler's murine encephalomyelitis virus-induced demyelination. Genetics. 163: 1041-6. PMID 12663542  1
2003 Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5  1
2003 Craig BA, Black MA, Doerge RW. Gene expression data: The technology and statistical analysis Journal of Agricultural, Biological, and Environmental Statistics. 8: 1-28. DOI: 10.1198/1085711031256  1
2002 Black MA, Doerge RW. Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments Bioinformatics. 18: 1609-1616. PMID 12490445 DOI: 10.1093/Bioinformatics/18.12.1609  1
2002 Roper RJ, Ma RZ, Biggins JE, Butterfield RJ, Michael SD, Tung KS, Doerge RW, Teuscher C. Interacting quantitative trait loci control loss of peripheral tolerance and susceptibility to autoimmune ovarian dysgenesis after day 3 thymectomy in mice. Journal of Immunology (Baltimore, Md. : 1950). 169: 1640-6. PMID 12133995 DOI: 10.4049/Jimmunol.169.3.1640  1
2002 Wilbur JD, Ghosh JK, Nakatsu CH, Brouder SM, Doerge RW. Variable selection in high-dimensional multivariate binary data with application to the analysis of microbial community DNA fingerprints. Biometrics. 58: 378-86. PMID 12071411 DOI: 10.1111/J.0006-341X.2002.00378.X  1
2002 Doerge RW. Mapping and analysis of quantitative trait loci in experimental populations. Nature Reviews. Genetics. 3: 43-52. PMID 11823790 DOI: 10.1038/Nrg703  1
2001 Roper RJ, Weis JJ, McCracken BA, Green CB, Ma Y, Weber KS, Fairbairn D, Butterfield RJ, Potter MR, Zachary JF, Doerge RW, Teuscher C. Genetic control of susceptibility to experimental Lyme arthritis is polygenic and exhibits consistent linkage to multiple loci on chromosome 5 in four independent mouse crosses. Genes and Immunity. 2: 388-97. PMID 11704805 DOI: 10.1038/sj.gene.6363801  1
2001 McIntyre LM, Coffman CJ, Doerge RW. Detection and localization of a single binary trait locus in experimental populations. Genetical Research. 78: 79-92. PMID 11556139 DOI: 10.1017/S0016672301005092  1
2000 Butterfield RJ, Blankenhorn EP, Roper RJ, Zachary JF, Doerge RW, Teuscher C. Identification of genetic loci controlling the characteristics and severity of brain and spinal cord lesions in experimental allergic encephalomyelitis American Journal of Pathology. 157: 637-645. PMID 10934166 DOI: 10.1016/S0002-9440(10)64574-9  1
2000 Doerge RW, Craig BA. Model selection for quantitative trait locus analysis in polyploids. Proceedings of the National Academy of Sciences of the United States of America. 97: 7951-6. PMID 10884425 DOI: 10.1073/Pnas.97.14.7951  1
2000 Nettleton D, Doerge RW. Accounting for variability in the use of permutation testing to detect quantitative trait loci Biometrics. 56: 52-58. PMID 10783776 DOI: 10.1111/J.0006-341X.2000.00052.X  1
2000 Blankenhorn EP, Butterfield RJ, Rigby R, Cort L, Giambrone D, McDermott P, McEntee K, Solowski N, Meeker ND, Zachary JF, Doerge RW, Teuscher C. Genetic analysis of the influence of pertussis toxin on experimental allergic encephalomyelitis susceptibility: An environmental agent can override genetic checkpoints Journal of Immunology. 164: 3420-3425. PMID 10706738 DOI: 10.4049/Jimmunol.164.6.3420  1
2000 Bernardo R, Romero-Severson J, Ziegle J, Hauser J, Joe L, Hookstra G, Doerge RW. Parental contribution and coefficient of coancestry among maize inbreds: Pedigree, RFLP, and SSR data Theoretical and Applied Genetics. 100: 552-556. DOI: 10.1007/S001220050072  1
1999 Teuscher C, Butterfield RJ, Ma RZ, Zachary JF, Doerge RW, Blankenhorn EP. Sequence polymorphisms in the chemokines Scya1 (TCA-3), Scya2 (monocyte chemoattractant protein (MCP)-1), and Scya12 (MCP-5) are candidates for eae7, a locus controlling susceptibility to monophasic remitting/nonrelapsing experimental allergic encephalomyelitis Journal of Immunology. 163: 2262-2266. PMID 10438970  1
1999 Butterfield RJ, Blankenhorn EP, Roper RJ, Zachary JF, Doerge RW, Sudweeks J, Rose J, Teuscher C. Genetic analysis of disease subtypes and sexual dimorphisms in mouse experimental allergic encephalomyelitis (EAE): Relapsing/remitting and monophasic remitting/nonrelapsing EAE are immunogenetically distinct Journal of Immunology. 162: 3096-3102. PMID 10072563  1
1999 Roper RJ, Griffith JS, Lyttle CR, Doerge RW, McNabb AW, Broadbent RE, Teuscher C. Interacting quantitative trait loci control phenotypic variation in murine estradiol-regulated responses Endocrinology. 140: 556-561. PMID 9927277 DOI: 10.1210/Endo.140.2.6521  1
1999 Weis JJ, McCracken BA, Ma Y, Fairbairn D, Roper RJ, Morrison TB, Weis JH, Zachary JF, Doerge RW, Teuscher C. Identification of quantitative trait loci governing arthritis severity and humoral responses in the murine model of Lyme disease Journal of Immunology. 162: 948-956. PMID 9916719  1
1999 Fennimore SA, Nyquist WE, Shaner GE, Doerge RW, Foley ME. A genetic model and molecular markers for wild oat (Avena fatua L.) seed dormancy Theoretical and Applied Genetics. 99: 711-718. DOI: 10.1007/S001220051288  1
1998 Roper RJ, Doerge RW, Call SB, Tung KS, Hickey WF, Teuscher C. Autoimmune orchitis, epididymitis, and vasitis are immunogenetically distinct lesions. The American Journal of Pathology. 152: 1337-45. PMID 9588902  1
1997 Teuscher C, Rhein DM, Livingstone KD, Paynter RA, Doerge RW, Nicholson SM, Melvold RW. Evidence that Tmevd2 and eae3 may represent either a common locus or members of a gene complex controlling susceptibility to immunologically mediated demyelination in mice. Journal of Immunology (Baltimore, Md. : 1950). 159: 4930-4. PMID 9366418  1
1997 Doerge RW, Zeng ZB, Weir BS. Statistical Issues in the Search for Genes Affecting Quantitative Traits in Experimental Populations Statistical Science. 12: 195-219. DOI: 10.1214/Ss/1030037909  1
1996 Doerge RW, Churchill GA. Permutation tests for multiple loci affecting a quantitative character Genetics. 142: 285-294. PMID 8770605  1
1996 Doerge RW, Rebaï A. Significance thresholds for QTL interval mapping tests Heredity. 76: 459-464. DOI: 10.1038/Hdy.1996.68  1
1996 Mutschler MA, Doerge RW, Liu SC, Kuai JP, Liedl BE, Shapiro JA. QTL analysis of pest resistance in the wild tomato Lycopersicon pennellii: QTLs controlling acylsugar level and composition Theoretical and Applied Genetics. 92: 709-718. DOI: 10.1007/s001220050183  1
1995 McCough SR, Doerge RW. QTL mapping in rice Trends in Genetics. 11: 482-487. PMID 8533164 DOI: 10.1016/S0168-9525(00)89157-X  1
1995 Doerge RW. Testing for linkage: Phase known/unknown Journal of Heredity. 86: 61-62. PMID 7890929  1
1994 Churchill GA, Doerge RW. Empirical threshold values for quantitative trait mapping Genetics. 138: 963-971. PMID 7851788  1
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