Alexei A. Aravin - Publications

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78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Venkei ZG, Gainetdinov I, Bagci A, Starostik MR, Choi CP, Fingerhut JM, Chen P, Balsara C, Whitfield TW, Bell GW, Feng S, Jacobsen SE, Aravin AA, Kim JK, Zamore PD, et al. A maternally programmed intergenerational mechanism enables male offspring to make piRNAs from Y-linked precursor RNAs in Drosophila. Nature Cell Biology. PMID 37723298 DOI: 10.1038/s41556-023-01227-4  0.304
2023 Ninova M, Holmes H, Lomenick B, Fejes Tóth K, Aravin AA. Pervasive SUMOylation of heterochromatin and piRNA pathway proteins. Cell Genomics. 3: 100329. PMID 37492097 DOI: 10.1016/j.xgen.2023.100329  0.349
2022 Lisitskaya L, Shin Y, Agapov A, Olina A, Kropocheva E, Ryazansky S, Aravin AA, Esyunina D, Murakami KS, Kulbachinskiy A. Author Correction: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nature Communications. 13: 4839. PMID 35978060 DOI: 10.1038/s41467-022-32616-2  0.317
2022 Lisitskaya L, Shin Y, Agapov A, Olina A, Kropocheva E, Ryazansky S, Aravin AA, Esyunina D, Murakami KS, Kulbachinskiy A. Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nature Communications. 13: 4624. PMID 35941106 DOI: 10.1038/s41467-022-32079-5  0.377
2021 Chen P, Kotov AA, Godneeva BK, Bazylev SS, Olenina LV, Aravin AA. piRNA-mediated gene regulation and adaptation to sex-specific transposon expression in male germline. Genes & Development. 35: 914-935. PMID 33985970 DOI: 10.1101/gad.345041.120  0.339
2021 Kropocheva E, Kuzmenko A, Aravin AA, Esyunina D, Kulbachinskiy A. A programmable pAgo nuclease with universal guide and target specificity from the mesophilic bacterium Kurthia massiliensis. Nucleic Acids Research. PMID 33744962 DOI: 10.1093/nar/gkab182  0.396
2020 Luo Y, Fefelova E, Ninova M, Chen YA, Aravin A. Repression of interrupted and intact rDNA by the SUMO pathway in . Elife. 9. PMID 33164748 DOI: 10.7554/eLife.52416  0.332
2020 Olina A, Kuzmenko A, Ninova M, Aravin AA, Kulbachinskiy A, Esyunina D. Genome-wide DNA sampling by Ago nuclease from the cyanobacterium . Rna Biology. 1-12. PMID 32013676 DOI: 10.1080/15476286.2020.1724716  0.3
2019 Ninova M, Godneeva B, Chen YA, Luo Y, Prakash SJ, Jankovics F, Erdélyi M, Aravin AA, Fejes Tóth K. The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation. Molecular Cell. PMID 31901448 DOI: 10.1016/j.molcel.2019.09.033  0.324
2019 Ninova M, Chen YA, Godneeva B, Rogers AK, Luo Y, Fejes Tóth K, Aravin AA. Su(var)2-10 and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin Silencing. Molecular Cell. PMID 31901446 DOI: 10.1016/j.molcel.2019.11.012  0.377
2019 Ninova M, Fejes Tóth K, Aravin AA. The control of gene expression and cell identity by H3K9 trimethylation. Development (Cambridge, England). 146. PMID 31540910 DOI: 10.1242/dev.181180  0.301
2019 Kotov AA, Adashev VE, Godneeva BK, Ninova M, Shatskikh AS, Bazylev SS, Aravin AA, Olenina LV. piRNA silencing contributes to interspecies hybrid sterility and reproductive isolation in Drosophila melanogaster. Nucleic Acids Research. PMID 30788506 DOI: 10.1093/nar/gkz130  0.345
2018 Ryazansky S, Kulbachinskiy A, Aravin AA. The Expanded Universe of Prokaryotic Argonaute Proteins. Mbio. 9. PMID 30563906 DOI: 10.1128/mBio.01935-18  0.334
2018 Lisitskaya L, Aravin AA, Kulbachinskiy A. DNA interference and beyond: structure and functions of prokaryotic Argonaute proteins. Nature Communications. 9: 5165. PMID 30514832 DOI: 10.1038/s41467-018-07449-7  0.39
2018 Liu Y, Esyunina D, Olovnikov I, Teplova M, Kulbachinskiy A, Aravin AA, Patel DJ. Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA. Cell Reports. 24: 453-462. PMID 29996105 DOI: 10.1016/J.Celrep.2018.06.021  0.357
2018 Olina AV, Kulbachinskiy AV, Aravin AA, Esyunina DM. Argonaute Proteins and Mechanisms of RNA Interference in Eukaryotes and Prokaryotes. Biochemistry. Biokhimiia. 83: 483-497. PMID 29738683 DOI: 10.1134/S0006297918050024  0.467
2017 Huang X, Fejes Tóth K, Aravin AA. piRNA Biogenesis in Drosophila melanogaster. Trends in Genetics : Tig. PMID 28964526 DOI: 10.1016/j.tig.2017.09.002  0.433
2016 Chen YA, Stuwe E, Luo Y, Ninova M, Le Thomas A, Rozhavskaya E, Li S, Vempati S, Laver JD, Patel DJ, Smibert CA, Lipshitz HD, Fejes Toth K, Aravin AA. Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors. Molecular Cell. PMID 27292797 DOI: 10.1016/J.Molcel.2016.05.010  0.426
2016 Hur JK, Luo Y, Moon S, Ninova M, Marinov GK, Chung YD, Aravin AA. Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila. Genes & Development. 30: 840-55. PMID 27036967 DOI: 10.1101/gad.276030.115  0.412
2015 Manakov SA, Pezic D, Marinov GK, Pastor WA, Sachidanandam R, Aravin AA. MIWI2 and MILI Have Differential Effects on piRNA Biogenesis and DNA Methylation. Cell Reports. 12: 1234-43. PMID 26279574 DOI: 10.1016/J.Celrep.2015.07.036  0.3
2015 Chen YA, Aravin AA. Non-Coding RNAs in Transcriptional Regulation: The review for Current Molecular Biology Reports. Current Molecular Biology Reports. 1: 10-18. PMID 26120554 DOI: 10.1007/s40610-015-0002-6  0.475
2015 Marinov GK, Wang J, Handler D, Wold BJ, Weng Z, Hannon GJ, Aravin AA, Zamore PD, Brennecke J, Toth KF. Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified. Developmental Cell. 32: 765-71. PMID 25805138 DOI: 10.1016/J.Devcel.2015.01.013  0.616
2014 Le Thomas A, Marinov GK, Aravin AA. A transgenerational process defines piRNA biogenesis in Drosophila virilis. Cell Reports. 8: 1617-23. PMID 25199836 DOI: 10.1016/j.celrep.2014.08.013  0.338
2014 Le Thomas A, Stuwe E, Li S, Du J, Marinov G, Rozhkov N, Chen YC, Luo Y, Sachidanandam R, Toth KF, Patel D, Aravin AA. Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing. Genes & Development. 28: 1667-80. PMID 25085419 DOI: 10.1101/Gad.245514.114  0.358
2014 Molaro A, Falciatori I, Hodges E, Aravin AA, Marran K, Rafii S, McCombie WR, Smith AD, Hannon GJ. Two waves of de novo methylation during mouse germ cell development. Genes & Development. 28: 1544-9. PMID 25030694 DOI: 10.1101/Gad.244350.114  0.566
2014 Pezic D, Manakov SA, Sachidanandam R, Aravin AA. piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells. Genes & Development. 28: 1410-28. PMID 24939875 DOI: 10.1101/gad.240895.114  0.338
2014 Hur JK, Olovnikov I, Aravin AA. Prokaryotic Argonautes defend genomes against invasive DNA. Trends in Biochemical Sciences. 39: 257-9. PMID 24836995 DOI: 10.1016/j.tibs.2014.04.006  0.478
2014 Stuwe E, Tóth KF, Aravin AA. Small but sturdy: small RNAs in cellular memory and epigenetics. Genes & Development. 28: 423-31. PMID 24589774 DOI: 10.1101/gad.236414.113  0.343
2014 Le Thomas A, Tóth KF, Aravin AA. To be or not to be a piRNA: genomic origin and processing of piRNAs. Genome Biology. 15: 204. PMID 24467990 DOI: 10.1186/gb4154  0.342
2014 Olovnikov I, Le Thomas A, Aravin AA. A framework for piRNA cluster manipulation. Methods in Molecular Biology (Clifton, N.J.). 1093: 47-58. PMID 24178556 DOI: 10.1007/978-1-62703-694-8_5  0.339
2013 Olovnikov I, Chan K, Sachidanandam R, Newman DK, Aravin AA. Bacterial argonaute samples the transcriptome to identify foreign DNA. Molecular Cell. 51: 594-605. PMID 24034694 DOI: 10.1016/J.Molcel.2013.08.014  0.461
2013 Le Thomas A, Rogers AK, Webster A, Marinov GK, Liao SE, Perkins EM, Hur JK, Aravin AA, Tóth KF. Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state. Genes & Development. 27: 390-9. PMID 23392610 DOI: 10.1101/gad.209841.112  0.405
2012 Olenkina OM, Egorova KS, Aravin AA, Naumova NM, Gvozdev VA, Olenina LV. Mapping of cis-regulatory sites in the promoter of testis-specific stellate genes of Drosophila melanogaster. Biochemistry. Biokhimii͡A. 77: 1285-93. PMID 23240566 DOI: 10.1134/S0006297912110077  0.593
2012 Malone C, Brennecke J, Czech B, Aravin A, Hannon GJ. Preparation of small RNA libraries for high-throughput sequencing Cold Spring Harbor Protocols. 7: 1067-1077. PMID 23028068 DOI: 10.1101/Pdb.Prot071431  0.555
2012 Olovnikov I, Aravin AA, Fejes Toth K. Small RNA in the nucleus: the RNA-chromatin ping-pong. Current Opinion in Genetics & Development. 22: 164-71. PMID 22349141 DOI: 10.1016/J.Gde.2012.01.002  0.519
2012 Muerdter F, Olovnikov I, Molaro A, Rozhkov NV, Czech B, Gordon A, Hannon GJ, Aravin AA. Production of artificial piRNAs in flies and mice. Rna (New York, N.Y.). 18: 42-52. PMID 22096018 DOI: 10.1261/Rna.029769.111  0.631
2012 Aravin AA. Abstract IA9: Small RNA pathways in germline Cancer Research. 72: IA9-IA9. DOI: 10.1158/1538-7445.NONRNA12-IA9  0.382
2011 Siomi MC, Sato K, Pezic D, Aravin AA. PIWI-interacting small RNAs: the vanguard of genome defence. Nature Reviews. Molecular Cell Biology. 12: 246-58. PMID 21427766 DOI: 10.1038/Nrm3089  0.533
2011 Aravin AA, Chan DC. piRNAs meet mitochondria. Developmental Cell. 20: 287-8. PMID 21397839 DOI: 10.1016/j.devcel.2011.03.003  0.303
2010 Rozhkov NV, Aravin AA, Zelentsova ES, Schostak NG, Sachidanandam R, McCombie WR, Hannon GJ, Evgen'ev MB. Small RNA-based silencing strategies for transposons in the process of invading Drosophila species. Rna (New York, N.Y.). 16: 1634-45. PMID 20581131 DOI: 10.1261/Rna.2217810  0.691
2010 Rozhkov NV, Aravin AA, Sachidanandam R, Hannon GJ, Sokolova ON, Zelentsova ES, Shostak NG, Evgen'ev MB. The RNA interference system differently responds to the same mobile element in distant Drosophila species. Doklady. Biochemistry and Biophysics. 431: 79-81. PMID 20514868 DOI: 10.1134/S1607672910020079  0.537
2009 Aravin AA, van der Heijden GW, Castañeda J, Vagin VV, Hannon GJ, Bortvin A. Cytoplasmic compartmentalization of the fetal piRNA pathway in mice. Plos Genetics. 5: e1000764. PMID 20011505 DOI: 10.1371/Journal.Pgen.1000764  0.532
2009 Vagin VV, Hannon GJ, Aravin AA. Arginine methylation as a molecular signature of the Piwi small RNA pathway. Cell Cycle (Georgetown, Tex.). 8: 4003-4. PMID 19949292 DOI: 10.4161/Cc.8.24.10146  0.601
2009 Vagin VV, Wohlschlegel J, Qu J, Jonsson Z, Huang X, Chuma S, Girard A, Sachidanandam R, Hannon GJ, Aravin AA. Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members. Genes & Development. 23: 1749-62. PMID 19584108 DOI: 10.1101/Gad.1814809  0.571
2008 Aravin AA, Hannon GJ. Small RNA silencing pathways in germ and stem cells. Cold Spring Harbor Symposia On Quantitative Biology. 73: 283-90. PMID 19270082 DOI: 10.1101/Sqb.2008.73.058  0.662
2008 Brennecke J, Malone CD, Aravin AA, Sachidanandam R, Stark A, Hannon GJ. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science (New York, N.Y.). 322: 1387-92. PMID 19039138 DOI: 10.1126/Science.1165171  0.604
2008 Aravin AA, Sachidanandam R, Bourc'his D, Schaefer C, Pezic D, Toth KF, Bestor T, Hannon GJ. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice. Molecular Cell. 31: 785-99. PMID 18922463 DOI: 10.1016/J.Molcel.2008.09.003  0.523
2008 Aravin AA, Bourc'his D. Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes & Development. 22: 970-5. PMID 18413711 DOI: 10.1101/Gad.1669408  0.454
2008 Tam OH, Aravin AA, Stein P, Girard A, Murchison EP, Cheloufi S, Hodges E, Anger M, Sachidanandam R, Schultz RM, Hannon GJ. Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature. 453: 534-8. PMID 18404147 DOI: 10.1038/Nature06904  0.677
2008 Olson AJ, Brennecke J, Aravin AA, Hannon GJ, Sachidanandam R. Analysis of large-scale sequencing of small RNAs. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 126-36. PMID 18229681  0.549
2007 Aravin AA, Hannon GJ, Brennecke J. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science (New York, N.Y.). 318: 761-4. PMID 17975059 DOI: 10.1126/Science.1146484  0.661
2007 Klenov MS, Lavrov SA, Stolyarenko AD, Ryazansky SS, Aravin AA, Tuschl T, Gvozdev VA. Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Research. 35: 5430-8. PMID 17702759 DOI: 10.1093/Nar/Gkm576  0.651
2007 Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell. 129: 1401-14. PMID 17604727 DOI: 10.1016/J.Cell.2007.04.040  0.388
2007 Aravin AA, Sachidanandam R, Girard A, Fejes-Toth K, Hannon GJ. Developmentally regulated piRNA clusters implicate MILI in transposon control. Science (New York, N.Y.). 316: 744-7. PMID 17446352 DOI: 10.1126/Science.1142612  0.618
2007 Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell. 128: 1089-103. PMID 17346786 DOI: 10.1016/J.Cell.2007.01.043  0.647
2006 Aravin A, Gaidatzis D, Pfeffer S, Lagos-Quintana M, Landgraf P, Iovino N, Morris P, Brownstein MJ, Kuramochi-Miyagawa S, Nakano T, Chien M, Russo JJ, Ju J, Sheridan R, Sander C, et al. A novel class of small RNAs bind to MILI protein in mouse testes. Nature. 442: 203-7. PMID 16751777 DOI: 10.1038/Nature04916  0.551
2005 Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M. Identification of clustered microRNAs using an ab initio prediction method. Bmc Bioinformatics. 6: 267. PMID 16274478 DOI: 10.1186/1471-2105-6-267  0.305
2005 Aravin A, Tuschl T. Identification and characterization of small RNAs involved in RNA silencing Febs Letters. 579: 5830-5840. PMID 16153643 DOI: 10.1016/J.Febslet.2005.08.009  0.542
2004 John B, Enright AJ, Aravin A, Tuschl T, Sander C, Marks DS. Human MicroRNA targets. Plos Biology. 2: e363. PMID 15502875 DOI: 10.1371/Journal.Pbio.0020363  0.341
2004 Aravin AA, Klenov MS, Vagin VV, Bantignies F, Cavalli G, Gvozdev VA. Dissection of a natural RNA silencing process in the Drosophila melanogaster germ line. Molecular and Cellular Biology. 24: 6742-50. PMID 15254241 DOI: 10.1128/Mcb.24.15.6742-6750.2004  0.67
2003 Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T. The small RNA profile during Drosophila melanogaster development. Developmental Cell. 5: 337-50. PMID 12919683 DOI: 10.1016/S1534-5807(03)00228-4  0.463
2003 Kogan GL, Tulin AV, Aravin AA, Abramov YA, Kalmykova AI, Maisonhaute C, Gvozdev VA. The GATE retrotransposon in Drosophila melanogaster: mobility in heterochromatin and aspects of its expression in germline tissues. Molecular Genetics and Genomics : Mgg. 269: 234-42. PMID 12756535 DOI: 10.1007/S00438-003-0827-1  0.641
2003 Gvozdev VA, Aravin AA, Abramov YA, Klenov MS, Kogan GL, Lavrov SA, Naumova NM, Olenkina OM, Tulin AV, Vagin VV. Stellate repeats: targets of silencing and modules causing cis-inactivation and trans-activation. Genetica. 117: 239-45. PMID 12723703 DOI: 10.1023/A:1022952315467  0.681
2002 Aravin AA, Vagin VV, Naumova NM, Rozovski? IaM, Klenov MS, Gvozdev VA. [The phenomenon of RNA interference and development of organism]. Ontogenez. 33: 349-60. PMID 12391916  0.671
2002 Aravin AA, Klenov MS, Vagin VV, Rozovski? IaM, Gvozdev VA. [Role of double-stranded RNA in eukaryotic gene silencing]. Molekuliarnaia Biologiia. 36: 240-51. PMID 11969085 DOI: 10.1023/A:1015357603566  0.67
2002 Aravin AA, Vagin VV, Naumova NM, Rozovskii YM, Klenov MS, Gvozdev VA. Russian Journal of Developmental Biology. 33: 284-294. DOI: 10.1023/A:1020440907106  0.477
2002 Aravin AA, Klenov MS, Vagin VV, Rozovskii YM, Gvozdev VA. Role of double-stranded RNA in eukaryotic gene silencing Molecular Biology. 36: 180-188. DOI: 10.1023/A:1015357603566  0.653
2001 Aravin AA, Vagin VV, Rozovski? IaM, Gvozdev VA. [Inhibition of gene expression by administration of homologous double-stranded RNA in Drosophila melanogaster cell culture]. Genetika. 37: 779-83. PMID 11517764  0.657
2001 Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Current Biology : Cb. 11: 1017-27. PMID 11470406 DOI: 10.1016/S0960-9822(01)00299-8  0.688
2001 Aravin AA, Vagin VV, Rozovsky YM, Gvozdev VA. Inhibition of Gene Expression by Homologous Double-Stranded RNA in a Drosophila melanogaster Cell Culture Russian Journal of Genetics. 37: 639-642. DOI: 10.1023/A:1016621207467  0.636
2000 Gvozdev VA, Kogan GL, Tulin AA, Aravin AA, Naumova NM, Shevelyov YY. Paralogous stellate and Su(Ste) repeats: evolution and ability to silence a reporter gene. Genetica. 109: 131-40. PMID 11293788 DOI: 10.1023/A:1026596419250  0.595
2000 Aravin AA, Naumova NM, Tulin AV, Klenov MS, Gvozdev VA. [The study of interaction between paralogous tandem repeats stellate and suppressor of stellate in the genome of Drosophila melanogaster]. Genetika. 36: 581-4. PMID 10822825  0.584
2000 Kogan GL, Epstein VN, Aravin AA, Gvozdev VA. Molecular evolution of two paralogous tandemly repeated heterochromatic gene clusters linked to the X and Y chromosomes of Drosophila melanogaster. Molecular Biology and Evolution. 17: 697-702. PMID 10779530 DOI: 10.1093/Oxfordjournals.Molbev.A026348  0.581
2000 Aravin AA, Naumova NM, Tulin AV, Klenov MS, Gvozdev VA. Studies of the interactions between the Stellate and Suppressor of Stellate paralogous tandem repeats in the genome of Drosophila melanogaster Russian Journal of Genetics. 36: 471-473.  0.533
1999 Gvozdev VA, Alatortsev VE, Aravin AA, Kalmykova AI, Kogan GL, Lavrov SA, Naumova NM, Nurminski? DI, Rasheva VI, Tolchkov EV. [Heterochromatin: molecular evolution and effects of gene location in Drosophila melanogaster]. Molekuliarnaia Biologiia. 33: 14-25. PMID 10330657  0.549
1999 Gvozdev VA, Alatortsev VE, Aravin AA, Kalmykova AI, Kogan GL, Lavrov SA, Naumova NM, Nurminskii DI, Rasheva VI, Tolchkov EV, Tulin AV, Shevelev YY. Heterochromatin: Molecular evolution and position effect variegation in Drosophila melanogaster Molecular Biology. 33: 9-19.  0.49
1998 Aravin AA, Yurchenko VYu, Merzlyak EM, Kolesnikov AA. The mitochondrial ND8 gene from Crithidia oncopelti is not pan-edited. Febs Letters. 431: 457-60. PMID 9714563 DOI: 10.1016/S0014-5793(98)00813-8  0.376
1998 Tulin AV, Naumova NM, Aravin AA, Gvozdev VA. Repeated, protein-encoding heterochromatic genes cause inactivation of a juxtaposed euchromatic gene. Febs Letters. 425: 513-6. PMID 9563524 DOI: 10.1016/S0014-5793(98)00286-5  0.578
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