Theresa Gaasterland - Publications

Affiliations: 
Rockefeller University, New York, NY, United States 
Area:
Genetics, Biostatistics Biology

108 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Bailey JN, Loomis SJ, Kang JH, Allingham RR, Gharahkhani P, Khor CC, Burdon KP, Aschard H, Chasman DI, Igo RP, Hysi PG, Glastonbury CA, Ashley-Koch A, Brilliant M, Brown AA, ... ... Gaasterland T, et al. Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma. Nature Genetics. PMID 26752265 DOI: 10.1038/ng.3482  0.48
2015 Kumar N, Richter J, Cutts J, Bush KT, Trujillo C, Nigam SK, Gaasterland T, Brafman D, Willert K. Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells. Elife. 4. PMID 26554899 DOI: 10.7554/eLife.08413  0.48
2014 Moya N, Cutts J, Gaasterland T, Willert K, Brafman DA. Endogenous WNT signaling regulates hPSC-derived neural progenitor cell heterogeneity and specifies their regional identity. Stem Cell Reports. 3: 1015-28. PMID 25458891 DOI: 10.1016/j.stemcr.2014.10.004  0.48
2014 Liu Y, Garrett ME, Yaspan BL, Bailey JC, Loomis SJ, Brilliant M, Budenz DL, Christen WG, Fingert JH, Gaasterland D, Gaasterland T, Kang JH, Lee RK, Lichter P, Moroi SE, et al. DNA copy number variants of known glaucoma genes in relation to primary open-angle glaucoma. Investigative Ophthalmology & Visual Science. 55: 8251-8. PMID 25414181 DOI: 10.1167/iovs.14-15712  0.48
2014 Dubinsky AN, Dastidar SG, Hsu CL, Zahra R, Djakovic SN, Duarte S, Esau CC, Spencer B, Ashe TD, Fischer KM, MacKenna DA, Sopher BL, Masliah E, Gaasterland T, Chau BN, et al. Let-7 coordinately suppresses components of the amino acid sensing pathway to repress mTORC1 and induce autophagy. Cell Metabolism. 20: 626-38. PMID 25295787 DOI: 10.1016/j.cmet.2014.09.001  0.48
2014 Springelkamp H, Höhn R, Mishra A, Hysi PG, Khor CC, Loomis SJ, Bailey JN, Gibson J, Thorleifsson G, Janssen SF, Luo X, Ramdas WD, Vithana E, Nongpiur ME, Montgomery GW, et al. Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. Nature Communications. 5: 4883. PMID 25241763 DOI: 10.1038/ncomms5883  0.48
2014 Bailey JN, Yaspan BL, Pasquale LR, Hauser MA, Kang JH, Loomis SJ, Brilliant M, Budenz DL, Christen WG, Fingert J, Gaasterland D, Gaasterland T, Kraft P, Lee RK, Lichter PR, et al. Hypothesis-independent pathway analysis implicates GABA and acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma. Human Genetics. 133: 1319-30. PMID 25037249 DOI: 10.1007/s00439-014-1468-7  0.48
2014 Carnes MU, Liu YP, Allingham RR, Whigham BT, Havens S, Garrett ME, Qiao C, Katsanis N, Wiggs JL, Pasquale LR, Ashley-Koch A, Oh EC, Hauser MA. Discovery and functional annotation of SIX6 variants in primary open-angle glaucoma. Plos Genetics. 10: e1004372. PMID 24875647 DOI: 10.1371/journal.pgen.1004372  0.48
2014 Kang JH, Loomis SJ, Yaspan BL, Bailey JC, Weinreb RN, Lee RK, Lichter PR, Budenz DL, Liu Y, Realini T, Gaasterland D, Gaasterland T, Friedman DS, McCarty CA, Moroi SE, et al. Vascular tone pathway polymorphisms in relation to primary open-angle glaucoma. Eye (London, England). 28: 662-71. PMID 24603425 DOI: 10.1038/eye.2014.42  0.48
2014 Loomis SJ, Kang JH, Weinreb RN, Yaspan BL, Cooke Bailey JN, Gaasterland D, Gaasterland T, Lee RK, Lichter PR, Budenz DL, Liu Y, Realini T, Friedman DS, McCarty CA, Moroi SE, et al. Association of CAV1/CAV2 genomic variants with primary open-angle glaucoma overall and by gender and pattern of visual field loss. Ophthalmology. 121: 508-16. PMID 24572674 DOI: 10.1016/j.ophtha.2013.09.012  0.48
2014 Fernandez A, Huggins IJ, Perna L, Brafman D, Lu D, Yao S, Gaasterland T, Carson DA, Willert K. The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 1409-14. PMID 24474766 DOI: 10.1073/pnas.1323697111  0.48
2014 Allison KA, Kaikkonen MU, Gaasterland T, Glass CK. Vespucci: a system for building annotated databases of nascent transcripts. Nucleic Acids Research. 42: 2433-47. PMID 24304890 DOI: 10.1093/nar/gkt1237  0.48
2013 Brafman DA, Moya N, Allen-Soltero S, Fellner T, Robinson M, McMillen ZL, Gaasterland T, Willert K. Analysis of SOX2-expressing cell populations derived from human pluripotent stem cells. Stem Cell Reports. 1: 464-78. PMID 24286033 DOI: 10.1016/j.stemcr.2013.09.005  0.48
2013 Bauer M, Bénard J, Gaasterland T, Willert K, Cappellen D. WNT5A encodes two isoforms with distinct functions in cancers. Plos One. 8: e80526. PMID 24260410 DOI: 10.1371/journal.pone.0080526  0.48
2013 Pasquale LR, Loomis SJ, Weinreb RN, Kang JH, Yaspan BL, Bailey JC, Gaasterland D, Gaasterland T, Lee RK, Scott WK, Lichter PR, Budenz DL, Liu Y, Realini T, Friedman DS, et al. Estrogen pathway polymorphisms in relation to primary open angle glaucoma: an analysis accounting for gender from the United States. Molecular Vision. 19: 1471-81. PMID 23869166  0.48
2013 Pasquale LR, Loomis SJ, Kang JH, Yaspan BL, Abdrabou W, Budenz DL, Chen TC, Delbono E, Friedman DS, Gaasterland D, Gaasterland T, Grosskreutz CL, Lee RK, Lichter PR, Liu Y, et al. CDKN2B-AS1 genotype-glaucoma feature correlations in primary open-angle glaucoma patients from the United States. American Journal of Ophthalmology. 155: 342-353.e5. PMID 23111177 DOI: 10.1016/j.ajo.2012.07.023  0.48
2013 Wiggs JL, Hauser MA, Abdrabou W, Allingham RR, Budenz DL, Delbono E, Friedman DS, Kang JH, Gaasterland D, Gaasterland T, Lee RK, Lichter PR, Loomis S, Liu Y, McCarty C, et al. The NEIGHBOR consortium primary open-angle glaucoma genome-wide association study: rationale, study design, and clinical variables. Journal of Glaucoma. 22: 517-25. PMID 22828004 DOI: 10.1097/IJG.0b013e31824d4fd8  0.48
2012 Cukras C, Gaasterland T, Lee P, Gudiseva HV, Chavali VR, Pullakhandam R, Maranhao B, Edsall L, Soares S, Reddy GB, Sieving PA, Ayyagari R. Exome analysis identified a novel mutation in the RBP4 gene in a consanguineous pedigree with retinal dystrophy and developmental abnormalities. Plos One. 7: e50205. PMID 23189188 DOI: 10.1371/journal.pone.0050205  0.48
2012 Duncan JL, Roorda A, Navani M, Vishweswaraiah S, Syed R, Soudry S, Ratnam K, Gudiseva HV, Lee P, Gaasterland T, Ayyagari R. Identification of a novel mutation in the CDHR1 gene in a family with recessive retinal degeneration. Archives of Ophthalmology (Chicago, Ill. : 1960). 130: 1301-8. PMID 23044944 DOI: 10.1001/archophthalmol.2012.1906  0.48
2012 Lee PL, Gaasterland T, Barton JC. Mild iron overload in an African American man with SLC40A1 D270V. Acta Haematologica. 128: 28-32. PMID 22584997 DOI: 10.1159/000337034  0.48
2012 Wiggs JL, Yaspan BL, Hauser MA, Kang JH, Allingham RR, Olson LM, Abdrabou W, Fan BJ, Wang DY, Brodeur W, Budenz DL, Caprioli J, Crenshaw A, Crooks K, Delbono E, ... ... Gaasterland T, et al. Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma. Plos Genetics. 8: e1002654. PMID 22570617 DOI: 10.1371/journal.pgen.1002654  0.48
2012 Kandarian B, Sethi J, Wu A, Baker M, Yazdani N, Kym E, Sanchez A, Edsall L, Gaasterland T, Macagno E. The medicinal leech genome encodes 21 innexin genes: Different combinations are expressed by identified central neurons Development Genes and Evolution. 222: 29-44. PMID 22358128 DOI: 10.1007/s00427-011-0387-z  0.48
2012 Taneri B, Asilmaz E, Gaasterland T. Biomedical impact of splicing mutations revealed through exome sequencing Molecular Medicine. 18: 314-319. PMID 22160217 DOI: 10.2119/molmed.2011.00126  0.48
2012 Van Nieuwerburgh F, Thompson RC, Ledesma J, Deforce D, Gaasterland T, Ordoukhanian P, Head SR. Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination. Nucleic Acids Research. 40: e24. PMID 22127871 DOI: 10.1093/nar/gkr1000  0.48
2011 Norden-Krichmar TM, Allen AE, Gaasterland T, Hildebrand M. Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana. Plos One. 6: e22870. PMID 21857960 DOI: 10.1371/journal.pone.0022870  0.48
2011 Meriaux C, Arafah K, Tasiemski A, Wisztorski M, Bruand J, Boidin-Wichlacz C, Desmons A, Debois D, Laprévote O, Brunelle A, Gaasterland T, Macagno E, Fournier I, Salzet M. Multiple changes in peptide and lipid expression associated with regeneration in the nervous system of the medicinal leech. Plos One. 6: e18359. PMID 21526169 DOI: 10.1371/journal.pone.0018359  0.48
2011 Bruand J, Sistla S, Mériaux C, Dorrestein PC, Gaasterland T, Ghassemian M, Wisztorski M, Fournier I, Salzet M, Macagno E, Bafna V. Automated querying and identification of novel peptides using MALDI mass spectrometric imaging. Journal of Proteome Research. 10: 1915-28. PMID 21332220 DOI: 10.1021/pr101159e  0.48
2011 Taneri B, Snyder B, Novoradovsky A, Gaasterland T. Alternative splicing in the fly and the worm: Splicing databases for drosophila melanogaster and caenorhabditis elegans Proceedings - International Workshop On Database and Expert Systems Applications, Dexa. 435-439. DOI: 10.1109/DEXA.2011.10  0.48
2010 Macagno ER, Gaasterland T, Edsall L, Bafna V, Soares MB, Scheetz T, Casavant T, Da Silva C, Wincker P, Tasiemski A, Salzet M. Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. Bmc Genomics. 11: 407. PMID 20579359 DOI: 10.1186/1471-2164-11-407  0.48
2010 Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R. The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1 Environmental Microbiology. 12: 2738-2754. PMID 20482743 DOI: 10.1111/j.1462-2920.2010.02242.x  0.48
2009 Taneri B, Novoradovsky A, Gaasterland T. Identification of shadow exons: Mining for alternative exons in human, mouse and rat comparative databases Proceedings - International Workshop On Database and Expert Systems Applications, Dexa. 208-212. DOI: 10.1109/DEXA.2009.43  0.48
2008 Podell S, Gaasterland T, Allen EE. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. Bmc Bioinformatics. 9: 419. PMID 18840280 DOI: 10.1186/1471-2105-9-419  0.48
2008 Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM. Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1. Applied and Environmental Microbiology. 74: 2646-58. PMID 18344346 DOI: 10.1128/AEM.01656-07  0.48
2008 Robidart JC, Bench SR, Feldman RA, Novoradovsky A, Podell SB, Gaasterland T, Allen EE, Felbeck H. Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics. Environmental Microbiology. 10: 727-37. PMID 18237306 DOI: 10.1111/j.1462-2920.2007.01496.x  0.48
2008 Gordon P, Gaasterland T, Sensen CW. Genomic Data Representation through Images-Magpie as an Example Biotechnology: Second, Completely Revised Edition. 5: 379-397. DOI: 10.1002/9783527620876.ch17  0.48
2008 Gopal S, Gaasterland T. Automated Genome Annotation and Comparative Genomics Biotechnology: Second, Completely Revised Edition. 5: 361-378. DOI: 10.1002/9783527620876.ch16  0.48
2007 Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T. Computational prediction and experimental validation of Ciona intestinalis microRNA genes. Bmc Genomics. 8: 445. PMID 18047675 DOI: 10.1186/1471-2164-8-445  0.48
2007 Chang EJ, Begum R, Chait BT, Gaasterland T. XPrediction of cyclin-dependent kinase phosphorylation substrates Plos One. 2. PMID 17668044 DOI: 10.1371/journal.pone.0000656  0.48
2007 Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proceedings of the National Academy of Sciences of the United States of America. 104: 7705-10. PMID 17460045 DOI: 10.1073/pnas.0611046104  0.48
2007 Li X, Wang XJ, Tannenhauser J, Podell S, Mukherjee P, Hertel M, Biane J, Masuda S, Nottebohm F, Gaasterland T. Genomic resources for songbird research and their use in characterizing gene expression during brain development. Proceedings of the National Academy of Sciences of the United States of America. 104: 6834-9. PMID 17426146 DOI: 10.1073/pnas.0701619104  0.48
2007 Zhang H, Hou Y, Miranda L, Campbell DA, Sturm NR, Gaasterland T, Lin S. Spliced leader RNA trans-splicing in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 104: 4618-23. PMID 17360573 DOI: 10.1073/pnas.0700258104  0.48
2007 Podell S, Gaasterland T. DarkHorse: A method for genome-wide prediction of horizontal gene transfer Genome Biology. 8. PMID 17274820 DOI: 10.1186/gb-2007-8-2-r16  0.48
2007 Sobral RG, Jones AE, Des Etages SG, Dougherty TJ, Peitzsch RM, Gaasterland T, Ludovice AM, De Lencastre H, Tomasz A. Extensive and genome-wide changes in the transcription profile of Staphylococcus aureus induced by modulating the transcription of the cell wall synthesis gene murF Journal of Bacteriology. 189: 2376-2391. PMID 17194794 DOI: 10.1128/JB.01439-06  0.48
2007 Dorr BJ, Gaasterland T. Exploiting aspectual features and connecting words for summarization-inspired temporal-relation extraction Information Processing and Management. 43: 1681-1704. DOI: 10.1016/j.ipm.2007.01.008  0.48
2006 Ule J, Stefani G, Mele A, Ruggiu M, Wang X, Taneri B, Gaasterland T, Blencowe BJ, Darnell RB. An RNA map predicting Nova-dependent splicing regulation. Nature. 444: 580-6. PMID 17065982 DOI: 10.1038/nature05304  0.48
2006 Cui C, Griffiths A, Li G, Silva LM, Kramer MF, Gaasterland T, Wang XJ, Coen DM. Prediction and identification of herpes simplex virus 1-encoded microRNAs. Journal of Virology. 80: 5499-508. PMID 16699030 DOI: 10.1128/JVI.00200-06  0.48
2006 Landry DM, Gaasterland T, Palenik BP. Molecular characterization of a phosphate-regulated cell-surface protein from the coccolithophorid, Emiliania huxleyi (Prymnesiophyceae) Journal of Phycology. 42: 814-821. DOI: 10.1111/j.1529-8817.2006.00247.x  0.48
2005 Gopal S, Awadalla S, Gaasterland T, Cross GA. A computational investigation of kinetoplastid trans-splicing. Genome Biology. 6: R95. PMID 16277750 DOI: 10.1186/gb-2005-6-11-r95  0.48
2005 Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, et al. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. Journal of Structural and Functional Genomics. 6: 225-32. PMID 16211523 DOI: 10.1007/s10969-005-6827-0  0.48
2005 Wang XJ, Gaasterland T, Chua NH. Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biology. 6: R30. PMID 15833117 DOI: 10.1186/gb-2005-6-4-r30  0.48
2005 Taneri B, Novoradovsky A, Snyder B, Gaasterland T. Databases for comparative analysis of human-mouse orthologous alternative splicing Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3388: 123-131.  0.48
2005 Novoradovsky A, Zhang V, Ghosh M, Hogrefe H, Sorge JA, Gaasterland T. Computational principles of primer design for site directed mutagenesis 2005 Nsti Nanotechnology Conference and Trade Show - Nsti Nanotech 2005 Technical Proceedings. 532-535.  0.48
2004 Taneri B, Snyder B, Novoradovsky A, Gaasterland T. Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific Genome Biology. 5. PMID 15461794  0.48
2004 Wang XJ, Reyes JL, Chua NH, Gaasterland T. Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biology. 5: R65. PMID 15345049 DOI: 10.1186/gb-2004-5-9-r65  0.48
2003 Hoth S, Ikeda Y, Morgante M, Wang X, Zuo J, Hanafey MK, Gaasterland T, Tingey SV, Chua NH. Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana. Febs Letters. 554: 373-80. PMID 14623097 DOI: 10.1016/S0014-5793(03)01194-3  0.48
2003 Gopal S, Cross GA, Gaasterland T. An organism-specific method to rank predicted coding regions in Trypanosoma brucei. Nucleic Acids Research. 31: 5877-85. PMID 14530436 DOI: 10.1093/nar/gkg798  0.48
2003 Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T. The small RNA profile during Drosophila melanogaster development. Developmental Cell. 5: 337-50. PMID 12919683 DOI: 10.1016/S1534-5807(03)00228-4  0.48
2003 Kim U, Siegel R, Ren X, Gunther CS, Gaasterland T, Roeder RG. Identification of transcription coactivator OCA-B-dependent genes involved in antigen-dependent B cell differentiation by cDNA array analyses. Proceedings of the National Academy of Sciences of the United States of America. 100: 8868-73. PMID 12857960 DOI: 10.1073/pnas.1033108100  0.48
2003 Ravasi T, Huber T, Zavolan M, Forrest A, Gaasterland T, Grimmond S, Arakawa T, Carninci P, Kawai J, Hayashizaki Y. Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome Genome Research. 13: 1430-1442. PMID 12819142 DOI: 10.1101/gr.949803  0.48
2003 Zavolan M, Kondo S, Schönbach C, Adachi J, Hume DA, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Gaasterland T. Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome Genome Research. 13: 1290-1300. PMID 12819126 DOI: 10.1101/gr.1017303  0.48
2002 Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Gaasterland T, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/nature01266  0.48
2002 Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. The underlying principles of scientific publication. Bioinformatics (Oxford, England). 18: 1409. PMID 12424109  0.48
2002 Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. Standards for microarray data. Science (New York, N.Y.). 298: 539. PMID 12387284  0.48
2002 Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. A guide to microarray experiments - An open letter to the scientific journals [1] Lancet. 360: 1019. PMID 12383684  0.48
2002 Zavolan M, Van Nimwegen E, Gaasterland T. Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome Genome Research. 12: 1377-1385. PMID 12213775 DOI: 10.1101/gr.191702  0.48
2002 Gaasterland T, Orengo CA. Editorial overview: Genomic insights into evolution Current Opinion in Structural Biology. 12: 345-347. PMID 12127453 DOI: 10.1016/S0959-440X(02)00329-9  0.48
2002 Arisue N, Hashimot T, Lee JA, Moore DV, Gordon P, Sensen CW, Gaasterland T, Hasegawa M, Müller M. The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2. The Journal of Eukaryotic Microbiology. 49: 1-10. PMID 11908892  0.48
2002 Bapteste E, Brinkmann H, Lee JA, Moore DV, Sensen CW, Gordon P, Duruflé L, Gaasterland T, Lopez P, Müller M, Philippe H. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proceedings of the National Academy of Sciences of the United States of America. 99: 1414-9. PMID 11830664 DOI: 10.1073/pnas.032662799  0.48
2002 Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. An open letter to the scientific journals Bioinformatics. 18: 1409.  0.48
2001 Gunther CS, Gaasterland T. Characterizing the relationship between protein-fusion and gene co-expression. Genome Informatics. International Conference On Genome Informatics. 12: 34-43. PMID 11791222  0.48
2001 Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics. 29: 365-71. PMID 11726920 DOI: 10.1038/ng1201-365  0.48
2001 Müller M, Lee JA, Gordon P, Gaasterland T, Sensen CW. Presence of prokaryotic and eukaryotic species in all subgroups of the PP i-dependent group II phosphofructokinase protein family Journal of Bacteriology. 183: 6714-6716. PMID 11673446 DOI: 10.1128/JB.183.22.6714-6716.2001  0.48
2001 Ehrt S, Schnappinger D, Bekiranov S, Drenkow J, Shi S, Gingeras TR, Gaasterland T, Schoolnik G, Nathan C. Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase. The Journal of Experimental Medicine. 194: 1123-40. PMID 11602641 DOI: 10.1084/jem.194.8.1123  0.48
2001 Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M. A functional update of the Escherichia coli K-12 genome Genome Biology. 2: RESEARCH0035. PMID 11574054  0.48
2001 Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH. Microarray-based analysis of early development in Xenopus laevis. Developmental Biology. 236: 64-75. PMID 11456444 DOI: 10.1006/dbio.2001.0298  0.48
2001 She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CC, Clausen IG, Curtis BA, De Moors A, Erauso G, Fletcher C, Gordon PM, Heikamp-de Jong I, Jeffries AC, ... ... Gaasterland T, et al. The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proceedings of the National Academy of Sciences of the United States of America. 98: 7835-40. PMID 11427726 DOI: 10.1073/pnas.141222098  0.48
2001 Gaasterland T, Oprea M. Whole-genome analysis: Annotations and updates Current Opinion in Structural Biology. 11: 377-381. PMID 11406390 DOI: 10.1016/S0959-440X(00)00213-X  0.48
2001 Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Eduardo Fajardo J, Eswar N, Sanchez R, Sali A, Gaasterland T. Homology-based annotation yields 1,042 new candidate genes in the drosophila melanogaster genome Nature Genetics. 27: 337-340. PMID 11242120 DOI: 10.1038/85922  0.48
2001 Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, ... ... Gaasterland T, et al. Functional annotation of a full-length mouse cDNA collection. Nature. 409: 685-90. PMID 11217851 DOI: 10.1038/35055500  0.48
2001 Kreitman M, Gaasterland T. Editorial overview: Genomes and evolution ships in the night? Current Opinion in Genetics and Development. 11: 609-611. DOI: 10.1016/S0959-437X(00)00241-0  0.48
2001 Sivaraman J, Li Y, Plamondon J, Larocque R, Raymond S, Sauvé V, Smith C, Boju L, Schrag J, Matte A, Gaasterland T, Cygler M. A structural genomics pilot project based on gene targets selected from Escherichia coli Journal of Crystal Growth. 232: 421-425. DOI: 10.1016/S0022-0248(01)01155-1  0.48
2000 Hannaert V, Brinkmann H, Nowitzki U, Lee JA, Albert MA, Sensen CW, Gaasterland T, Müller M, Michels P, Martin W. Enolase from Trypanosoma brucei, from the amitochondriate protist Mastigamoeba balamuthi, and from the chloroplast and cytosol of Euglena gracilis: Pieces in the evolutionary puzzle of the eukaryotic glycolytic pathway Molecular Biology and Evolution. 17: 989-1000. PMID 10889212  0.48
2000 Gaasterland T, Sczyrba A, Thomas E, Aytekin-Kurban G, Gordon P, Sensen CW. MAGPIE/EGRET annotation of the 2.9-mb Drosophila melanogaster Adh region Genome Research. 10: 502-510. PMID 10779489 DOI: 10.1101/gr.10.4.502  0.48
2000 Charlebois RL, Singh RK, Chan-Weiher CC, Allard G, Chow C, Confalonieri F, Curtis B, Duguet M, Erauso G, Faguy D, Gaasterland T, Garrett RA, Gordon P, Jeffries AC, Kozera C, et al. Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 43: 116-36. PMID 10701121  0.48
2000 Gaasterland T, Bekiranov S. Making the most of microarray data Nature Genetics. 24: 204-206. PMID 10700163 DOI: 10.1038/73392  0.48
1999 Gaasterland T. Archaeal genomics Current Opinion in Microbiology. 2: 542-547. PMID 10508726 DOI: 10.1016/S1369-5274(99)00014-4  0.48
1999 Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. Structural genomics: beyond the human genome project. Nature Genetics. 23: 151-7. PMID 10508510 DOI: 10.1038/13783  0.48
1999 Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 Journal of Bacteriology. 181: 1585-1602. PMID 10049392  0.48
1998 Ragan MA, Gaasterland T. Microbial genescapes: a prokaryotic view of the yeast genome. Microbial & Comparative Genomics. 3: 219-35. PMID 10027191  0.48
1998 Gaasterland T, Ragan MA. Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes. Microbial & Comparative Genomics. 3: 199-217. PMID 10027190  0.48
1998 Sensen CW, Charlebois RL, Chow C, Clausen IG, Curtis B, Doolittle WF, Duguet M, Erauso G, Gaasterland T, Garrett RA, Gordon P, de Jong IH, Jeffries AC, Kozera C, Medina N, et al. Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles : Life Under Extreme Conditions. 2: 305-12. PMID 9783178 DOI: 10.1007/s007920050073  0.48
1998 Gaasterland T, Ragan MA. Constructing multigenome views of whole microbial genomes. Microbial & Comparative Genomics. 3: 177-92. PMID 9775388  0.48
1998 Gaasterland T. Structural genomics: Bioinformatics in the driver's seat Nature Biotechnology. 16: 625-627. PMID 9661193 DOI: 10.1038/nbt0798-625  0.48
1998 Gaasterland T. Structural genomics taking shape Trends in Genetics. 14: 135. PMID 9594659 DOI: 10.1016/S0168-9525(98)01430-9  0.48
1998 Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M, Huber R, Feldman RA, Short JM, Olsen GJ, Swanson RV. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature. 392: 353-8. PMID 9537320 DOI: 10.1038/32831  0.48
1997 Gaasterland T. Cooperative answering through controlled query relaxation Ieee Expert-Intelligent Systems and Their Applications. 12: 48-59. DOI: 10.1109/64.621228  0.48
1997 Gaasterland T, Lobo J. Qualifying answers according to user needs and preferences Fundamenta Informaticae. 32: 121-137.  0.48
1996 Gaasterland T, Sensen CW. Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture Biochimie. 78: 302-310. PMID 8905148 DOI: 10.1016/0300-9084(96)84761-4  0.48
1996 Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC, Liu QY, Penny SL, Young F, Schenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL. Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2. Molecular Microbiology. 22: 175-91. PMID 8899719 DOI: 10.1111/j.1365-2958.1996.tb02666.x  0.48
1996 Gaasterland T, Sensen CW. MAGPIE: Automated genome interpretation Trends in Genetics. 12: 76-78. PMID 8851977 DOI: 10.1016/0168-9525(96)81406-5  0.48
1996 Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW. The Sulfolobus solfataricus P2 genome project. Febs Letters. 389: 88-91. PMID 8682213 DOI: 10.1016/0014-5793(96)00525-X  0.48
1996 Selkov E, Basmanova S, Gaasterland T, Goryanin I, Gretchkin Y, Maltsev N, Nenashev V, Overbeek R, Panyushkina E, Pronevitch L, Yunus L. The metabolic pathway collection from EMP: The enzymes and metabolic pathways database Nucleic Acids Research. 24: 26-28. PMID 8594593 DOI: 10.1093/nar/24.1.26  0.48
1995 Gaasterland T, Selkov E. Reconstruction of metabolic networks using incomplete information Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 3: 127-135. PMID 7584429  0.48
1995 Robles C, Lobo J, Gaasterland T. An experimental distributed deductive database system Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1013: 128-142.  0.48
1994 Gaasterland T, Maltsev N, Lobo J, Chen GH. Assigning function to CDS through qualified query answering: beyond alignment and motifs Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 2: 130-137. PMID 7584382  0.48
1993 Gaasterland T, Lobo J. Processing negation and disjunction in logic programs through integrity constraints Journal of Intelligent Information Systems. 2: 225-243. DOI: 10.1007/BF00962069  0.48
1992 Gaasterland T, Godfrey P, Minker J. Relaxation as a platform for cooperative answering Journal of Intelligent Information Systems. 1: 293-321. DOI: 10.1007/BF00962922  0.48
1992 Gaasterland T, Godfrey P, Minker J. An overview of cooperative answering Journal of Intelligent Information Systems. 1: 123-157. DOI: 10.1007/BF00962280  0.48
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