John S. Lowengrub - Publications

University of Minnesota, Twin Cities, Minneapolis, MN 
 University of California, Irvine, Irvine, CA 

91 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lomeli LM, Iniguez A, Tata P, Jena N, Liu ZY, Van Etten R, Lander AD, Shahbaba B, Lowengrub JS, Minin VN. Optimal experimental design for mathematical models of haematopoiesis. Journal of the Royal Society, Interface. 18: 20200729. PMID 33499768 DOI: 10.1098/rsif.2020.0729  0.8
2019 Liu K, Lowengrub J, Allard J. Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales. Journal of Computational Physics. 386: 248-263. PMID 31787778 DOI: 10.1016/  0.32
2019 Liu K, Chu B, Newby J, Read EL, Lowengrub J, Allard J. Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length. Plos Computational Biology. 15: e1006352. PMID 31022168 DOI: 10.1371/journal.pcbi.1006352  0.32
2018 Chen Y, Lowengrub JS. Tumor growth and calcification in evolving microenvironmental geometries. Journal of Theoretical Biology. 463: 138-154. PMID 30528340 DOI: 10.1016/j.jtbi.2018.12.006  1
2018 Koay EJ, Lee Y, Cristini V, Lowengrub JS, Kang Y, San Lucas FA, Hobbs BP, Ye R, Elganainy D, Almahariq M, Amer AM, Yu S, Chatterjee D, Yan H, Park PC, et al. A visually apparent and quantifiable CT imaging feature identifies biophysical subtypes of pancreatic ductal adenocarcinoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 30082477 DOI: 10.1158/1078-0432.CCR-17-3668  0.48
2018 Pham K, Turian E, Liu K, Li S, Lowengrub J. Nonlinear studies of tumor morphological stability using a two-fluid flow model. Journal of Mathematical Biology. PMID 29546457 DOI: 10.1007/s00285-018-1212-3  0.72
2018 Cummings J, Lowengrub JS, Sumpter BG, Wise SM, Kumar R. Modeling solvent evaporation during thin film formation in phase separating polymer mixtures. Soft Matter. PMID 29451285 DOI: 10.1039/c7sm02560b  0.76
2017 Ye H, Zhou J, Er D, Price CC, Yu Z, Liu Y, Lowengrub J, Lou J, Liu Z, Shenoy VB. Toward a Mechanistic Understanding of Vertical Growth of van der Waals Stacked 2D Materials: A Multiscale Model and Experiments. Acs Nano. PMID 29206441 DOI: 10.1021/acsnano.7b07604  0.44
2016 Konstorum A, Hillen T, Lowengrub J. Feedback Regulation in a Cancer Stem Cell Model can Cause an Allee Effect. Bulletin of Mathematical Biology. PMID 27113934 DOI: 10.1007/s11538-016-0161-5  1
2016 Kunche S, Yan H, Calof AL, Lowengrub JS, Lander AD. Feedback, Lineages and Self-Organizing Morphogenesis. Plos Computational Biology. 12: e1004814. PMID 26989903 DOI: 10.1371/journal.pcbi.1004814  1
2016 Baskaran A, Guan Z, Lowengrub J. Energy stable multigrid method for local and non-local hydrodynamic models for freezing Computer Methods in Applied Mechanics and Engineering. 299: 22-56. DOI: 10.1016/j.cma.2015.10.011  1
2016 Zheng X, Lowengrub J. An interface-fitted adaptive mesh method for elliptic problems and its application in free interface problems with surface tension Advances in Computational Mathematics. 1-33. DOI: 10.1007/s10444-016-9460-5  1
2015 Meeds E, Chiang M, Lee M, Cinquin O, Lowengrub J, Welling M. POPE: Post optimization posterior evaluation of likelihood free models Bmc Bioinformatics. 16. DOI: 10.1186/s12859-015-0658-1  1
2014 Chen Y, Lowengrub JS. Tumor growth in complex, evolving microenvironmental geometries: a diffuse domain approach. Journal of Theoretical Biology. 361: 14-30. PMID 25014472 DOI: 10.1016/j.jtbi.2014.06.024  1
2014 Wu M, Frieboes HB, Chaplain MA, McDougall SR, Cristini V, Lowengrub JS. The effect of interstitial pressure on therapeutic agent transport: coupling with the tumor blood and lymphatic vascular systems. Journal of Theoretical Biology. 355: 194-207. PMID 24751927 DOI: 10.1016/j.jtbi.2014.04.012  1
2014 Chen Y, Wise SM, Shenoy VB, Lowengrub JS. A stable scheme for a nonlinear, multiphase tumor growth model with an elastic membrane. International Journal For Numerical Methods in Biomedical Engineering. 30: 726-54. PMID 24443369 DOI: 10.1002/cnm.2624  1
2014 Li JF, Lowengrub J. The effects of cell compressibility, motility and contact inhibition on the growth of tumor cell clusters using the Cellular Potts Model. Journal of Theoretical Biology. 343: 79-91. PMID 24211749 DOI: 10.1016/j.jtbi.2013.10.008  0.4
2014 Guan Z, Lowengrub JS, Wang C, Wise SM. Second order convex splitting schemes for periodic nonlocal Cahn-Hilliard and Allen-Cahn equations Journal of Computational Physics. 277: 48-71. DOI: 10.1016/  1
2014 Guo Z, Lin P, Lowengrub JS. A numerical method for the quasi-incompressible Cahn-Hilliard-Navier-Stokes equations for variable density flows with a discrete energy law Journal of Computational Physics. 276: 486-507. DOI: 10.1016/  1
2013 Konstorum A, Sprowl SA, Waterman ML, Lander AD, Lowengrub JS. Predicting mechanism of biphasic growth factor action on tumor growth using a multi-species model with feedback control. Journal of Coupled Systems and Multiscale Dynamics. 1: 459-467. PMID 25075381 DOI: 10.1166/jcsmd.2013.1028  0.8
2013 Wu M, Frieboes HB, McDougall SR, Chaplain MA, Cristini V, Lowengrub J. The effect of interstitial pressure on tumor growth: coupling with the blood and lymphatic vascular systems. Journal of Theoretical Biology. 320: 131-51. PMID 23220211 DOI: 10.1016/j.jtbi.2012.11.031  1
2013 Barua AK, Li S, Feng H, Li X, Lowengrub J. An efficient rescaling algorithm for simulating the evolution of multiple elastically stressed precipitates Communications in Computational Physics. 14: 940-959. DOI: 10.4208/cicp.251012.271212a  1
2013 Baskaran A, Lowengrub JS, Wang C, Wise SM. Convergence analysis of a second order convex splitting scheme for the modified phase field crystal equation Siam Journal On Numerical Analysis. 51: 2851-2873. DOI: 10.1137/120880677  1
2013 Baskaran A, Hu Z, Lowengrub JS, Wang C, Wise SM, Zhou P. Energy stable and efficient finite-difference nonlinear multigrid schemes for the modified phase field crystal equation Journal of Computational Physics. 250: 270-292. DOI: 10.1016/  1
2012 Sohn J, Li S, Li X, Lowengrub JS. Axisymmetric multicomponent vesicles: A comparison of hydrodynamic and geometric models. International Journal For Numerical Methods in Biomedical Engineering. 28: 346-68. PMID 25830201 DOI: 10.1002/cnm.2475  1
2012 Zhou P, Wise S, Li X, Lowengrub J. Coarsening of elastically stressed, strongly anisotropic driven thin films. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 061605. PMID 23005107 DOI: 10.1103/PhysRevE.85.061605  0.8
2012 Youssefpour H, Li X, Lander AD, Lowengrub JS. Multispecies model of cell lineages and feedback control in solid tumors. Journal of Theoretical Biology. 304: 39-59. PMID 22554945 DOI: 10.1016/j.jtbi.2012.02.030  1
2012 Chauviere A, Hatzikirou H, Kevrekidis IG, Lowengrub JS, Cristini V. Dynamic density functional theory of solid tumor growth: Preliminary models. Aip Advances. 2: 11210. PMID 22489279 DOI: 10.1063/1.3699065  1
2012 van de Ven AL, Wu M, Lowengrub J, McDougall SR, Chaplain MA, Cristini V, Ferrari M, Frieboes HB. Integrated intravital microscopy and mathematical modeling to optimize nanotherapeutics delivery to tumors. Aip Advances. 2: 11208. PMID 22489278 DOI: 10.1063/1.3699060  1
2012 He A, Lowengrub J, Belmonte A. Modeling an elastic fingering instability in a reactive hele-shaw flow Siam Journal On Applied Mathematics. 72: 842-856. DOI: 10.1137/110844313  1
2012 Hu Z, Lowengrub JS, Wise SM, Voigt A. Phase-field modeling of epitaxial growth: Applications to step trains and island dynamics Physica D: Nonlinear Phenomena. 241: 77-94. DOI: 10.1016/j.physd.2011.09.004  1
2012 Barua A, Li S, Li X, Lowengrub J. Self-similar evolution of a precipitate in inhomogeneous elastic media Journal of Crystal Growth. 351: 62-71. DOI: 10.1016/j.jcrysgro.2012.04.020  1
2012 Hatzikirou H, Chauvière A, Lowengrub J, De Groot J, Cristini V. Effect of vascularization on glioma tumor growth Modeling Tumor Vasculature: Molecular, Cellular, and Tissue Level Aspects and Implications. 2147483647: 237-259. DOI: 10.1007/978-1-4614-0052-3_10  1
2011 Frieboes HB, Chaplain MA, Thompson AM, Bearer EL, Lowengrub JS, Cristini V. Physical oncology: a bench-to-bedside quantitative and predictive approach. Cancer Research. 71: 298-302. PMID 21224346 DOI: 10.1158/0008-5472.CAN-10-2676  1
2011 Teigen KE, Song P, Lowengrub J, Voigt A. A diffuse-interface method for two-phase flows with soluble surfactants. Journal of Computational Physics. 230: 375-393. PMID 21218125 DOI: 10.1016/  0.72
2011 Pham K, Frieboes HB, Cristini V, Lowengrub J. Predictions of tumour morphological stability and evaluation against experimental observations. Journal of the Royal Society, Interface / the Royal Society. 8: 16-29. PMID 20519213 DOI: 10.1098/rsif.2010.0194  1
2011 Frieboes HB, Chaplain MAJ, Thompson AM, Bearer EL, Lowengrub JS, Cristini V. Correction: Physical oncology: A bench-to-bedside quantitative and predictive approach (Cancer Research (2011) 71, (298-302)) Cancer Research. 71: 2024. DOI: 10.1158/0008-5472.CAN-11-0122  1
2011 Wise SM, Lowengrub JS, Cristini V. An adaptive multigrid algorithm for simulating solid tumor growth using mixture models Mathematical and Computer Modelling. 53: 1-20. DOI: 10.1016/j.mcm.2010.07.007  1
2010 Chauviere AH, Hatzikirou H, Lowengrub JS, Frieboes HB, Thompson AM, Cristini V. Mathematical Oncology: How Are the Mathematical and Physical Sciences Contributing to the War on Breast Cancer? Current Breast Cancer Reports. 2: 121-129. PMID 21151486 DOI: 10.1007/s12609-010-0020-6  1
2010 Sohn JS, Tseng YH, Li S, Voigt A, Lowengrub JS. Dynamics of multicomponent vesicles in a viscous fluid. Journal of Computational Physics. 229: 119-144. PMID 20808718 DOI: 10.1016/  1
2010 Thalhauser CJ, Lowengrub JS, Stupack D, Komarova NL. Selection in spatial stochastic models of cancer: migration as a key modulator of fitness. Biology Direct. 5: 21. PMID 20406439 DOI: 10.1186/1745-6150-5-21  1
2010 Frieboes HB, Jin F, Chuang YL, Wise SM, Lowengrub JS, Cristini V. Three-dimensional multispecies nonlinear tumor growth-II: Tumor invasion and angiogenesis. Journal of Theoretical Biology. 264: 1254-78. PMID 20303982 DOI: 10.1016/j.jtbi.2010.02.036  1
2010 Wolkenhauer O, Auffray C, Baltrusch S, Blüthgen N, Byrne H, Cascante M, Ciliberto A, Dale T, Drasdo D, Fell D, Ferrell JE, Gallahan D, Gatenby R, Günther U, Harms BD, ... ... Lowengrub J, et al. Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research. 70: 12-3. PMID 20028868 DOI: 10.1158/0008-5472.CAN-09-2676  1
2010 Lowengrub JS, Frieboes HB, Jin F, Chuang YL, Li X, MacKlin P, Wise SM, Cristini V. Nonlinear modelling of cancer: Bridging the gap between cells and tumours Nonlinearity. 23. DOI: 10.1088/0951-7715/23/1/R01  1
2010 Li X. Analysis and calibration of single-phase continuum tumor models Multiscale Modeling of Cancer: An Integrated Experimental and Mathematical Modeling Approach. 41-66. DOI: 10.1017/CBO9780511781452.005  0.96
2010 Cristini V, Lowengrub J. Multiscale modeling of cancer: An integrated experimental and mathematical modeling approach Multiscale Modeling of Cancer: An Integrated Experimental and Mathematical Modeling Approach. 1-278. DOI: 10.1017/CBO9780511781452  1
2009 Li S, Lowengrub JS, Fontana J, Palffy-Muhoray P. Control of viscous fingering patterns in a radial Hele-Shaw cell. Physical Review Letters. 102: 174501. PMID 19518786 DOI: 10.1103/PhysRevLett.102.174501  1
2009 Lowengrub JS, Rätz A, Voigt A. Phase-field modeling of the dynamics of multicomponent vesicles: Spinodal decomposition, coarsening, budding, and fission. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 031926. PMID 19391990 DOI: 10.1103/PhysRevE.79.031926  1
2009 Bearer EL, Lowengrub JS, Frieboes HB, Chuang YL, Jin F, Wise SM, Ferrari M, Agus DB, Cristini V. Multiparameter computational modeling of tumor invasion. Cancer Research. 69: 4493-501. PMID 19366801 DOI: 10.1158/0008-5472.CAN-08-3834  1
2009 Cristini V, Li X, Lowengrub JS, Wise SM. Nonlinear simulations of solid tumor growth using a mixture model: invasion and branching. Journal of Mathematical Biology. 58: 723-63. PMID 18787827 DOI: 10.1007/s00285-008-0215-x  1
2009 Macklin P, McDougall S, Anderson AR, Chaplain MA, Cristini V, Lowengrub J. Multiscale modelling and nonlinear simulation of vascular tumour growth. Journal of Mathematical Biology. 58: 765-98. PMID 18781303 DOI: 10.1007/s00285-008-0216-9  1
2009 Torabi S, Lowengrub J, Voigt A, Wise S. A new phase-field model for strongly anisotropic systems Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 465: 1337-1359. DOI: 10.1098/rspa.2008.0385  1
2009 Hu Z, Wise SM, Wang C, Lowengrub JS. Stable and efficient finite-difference nonlinear-multigrid schemes for the phase field crystal equation Journal of Computational Physics. 228: 5323-5339. DOI: 10.1016/  1
2008 Macklin P, Lowengrub JS. A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth. Journal of Scientific Computing. 35: 266-299. PMID 21331304 DOI: 10.1007/s10915-008-9190-z  1
2008 Wise SM, Lowengrub JS, Frieboes HB, Cristini V. Three-dimensional multispecies nonlinear tumor growth-I. Model and numerical method Journal of Theoretical Biology. 253: 524-543. PMID 18485374 DOI: 10.1016/j.jtbi.2008.03.027  1
2008 Raub CB, Kim PD, Putnam AJ, Lowengrub JS, Tromberg BJ, George SC. Correlations between second harmonic signal, microstructure, and mechanics of contracting collagen gels Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6858. DOI: 10.1117/12.764110  1
2007 Yeon DH, Cha PR, Lowengrub JS, Voigt A, Thornton K. Linear stability analysis for step meandering instabilities with elastic interactions and Ehrlich-Schwoebel barriers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 011601. PMID 17677458 DOI: 10.1103/PhysRevE.76.011601  1
2007 Frieboes HB, Lowengrub JS, Wise S, Zheng X, Macklin P, Bearer EL, Cristini V. Computer simulation of glioma growth and morphology. Neuroimage. 37: S59-70. PMID 17475515 DOI: 10.1016/j.neuroimage.2007.03.008  1
2007 Hu Z, Li S, Lowengrub JS. Morphological stability analysis of the epitaxial growth of a circular island: Application to nanoscale shape control Physica D: Nonlinear Phenomena. 233: 151-166. DOI: 10.1016/j.physd.2007.06.020  1
2007 Li S, Lowengrub JS, Leo PH. A rescaling scheme with application to the long-time simulation of viscous fingering in a Hele-Shaw cell Journal of Computational Physics. 225: 554-567. DOI: 10.1016/  1
2007 Glicksman ME, Lowengrub JS, Li S, Li X. A deterministic mechanism for dendritic solidification kinetics Jom. 59: 27-34. DOI: 10.1007/s11837-007-0100-x  1
2007 Lowengrub JS, Xu JJ, Voigt A. Surface phase separation and flow in a simple model of multicomponent drops and vesicles Fluid Dynamics and Materials Processing. 3: 1-19.  1
2007 Li X, Cristini V, Nie Q, Lowengrub JS. Nonlinear three-dimensional simulation of solid tumor growth Discrete and Continuous Dynamical Systems - Series B. 7: 581-604.  1
2006 Yang X, James AJ, Lowengrub J, Zheng X, Cristini V. An adaptive coupled level-set/volume-of-fluid interface capturing method for unstructured triangular grids Journal of Computational Physics. 217: 364-394. DOI: 10.1016/  1
2006 Glicksman ME, Lowengrub JS, Li S. Non-monotone temperature boundary conditions in dendritic growth Modeling of Casting, Welding and Advanced Solidification Processes - Xi. 1: 521-528.  1
2005 Wise SM, Lowengrub JS, Kim JS, Thornton K, Voorhees PW, Johnson WC. Quantum dot formation on a strain-patterned epitaxial thin film Applied Physics Letters. 87: 1-3. DOI: 10.1063/1.2061852  1
2005 Li S, Lowengrub JS, Leo PH. Nonlinear morphological control of growing crystals Physica D: Nonlinear Phenomena. 208: 209-219. DOI: 10.1016/j.physd.2005.06.021  1
2005 Li S, Lowengrub JS, Leo PH, Cristini V. Nonlinear stability analysis of self-similar crystal growth: Control of the Mullins-Sekerka instability Journal of Crystal Growth. 277: 578-592. DOI: 10.1016/j.jcrysgro.2004.12.042  1
2005 Zheng X, Lowengrub J, Anderson A, Cristini V. Adaptive unstructured volume remeshing - II: Application to two- and three-dimensional level-set simulations of multiphase flow Journal of Computational Physics. 208: 626-650. DOI: 10.1016/  1
2004 Wise SM, Lowengrub JS, Kim JS, Johnson WC. Efficient phase-field simulation of quantum dot formation in a strained heteroepitaxial film Superlattices and Microstructures. 36: 293-304. DOI: 10.1016/j.spmi.2004.08.029  1
2004 Li S, Lowengrub JS, Leo PH, Cristini V. Nonlinear theory of self-similar crystal growth and melting Journal of Crystal Growth. 267: 703-713. DOI: 10.1016/j.jcrysgro.2004.04.002  1
2004 Cristini V, Lowengrub J. Three-dimensional crystal growth - II: Nonlinear simulation and control of the Mullins-Sekerka instability Journal of Crystal Growth. 266: 552-567. DOI: 10.1016/j.jcrysgro.2004.02.115  1
2004 James AJ, Lowengrub J. A surfactant-conserving volume-of-fluid method for interfacial flows with insoluble surfactant Journal of Computational Physics. 201: 685-722. DOI: 10.1016/  1
2004 Li X, Thornton K, Nie Q, Voorhees PW, Lowengrub JS. Two- and three-dimensional equilibrium morphology of a misfitting particle and the Gibbs-Thomson effect Acta Materialia. 52: 5829-5843. DOI: 10.1016/j.actamat.2004.08.041  1
2004 Lowengrub JS, Hu Z, Wise SM, Kim JS, Voigt A. Phase-field modeling of step dynamics Materials Research Society Symposium Proceedings. 859: 118-123.  1
2003 Cristini V, Lowengrub J, Nie Q. Nonlinear simulation of tumor growth. Journal of Mathematical Biology. 46: 191-224. PMID 12728333 DOI: 10.1007/s00285-002-0174-6  1
2002 Lee HG, Lowengrub JS, Goodman J. Modeling pinchoff and reconnection in a Hele-Shaw cell. II. Analysis and simulation in the nonlinear regime Physics of Fluids. 14: 514-545. DOI: 10.1063/1.1425844  1
2002 Lee HG, Lowengrub JS, Goodman J. Modeling pinchoff and reconnection in a hele-shaw cell. I. The models and their calibration Physics of Fluids. 14: 492-513. DOI: 10.1063/1.1425843  1
2002 Cristini V, Lowengrub J. Three-dimensional crystal growth - I: Linear analysis and self-similar evolution Journal of Crystal Growth. 240: 267-276. DOI: 10.1016/S0022-0248(02)00831-X  1
2002 Devireddy RV, Leo PH, Lowengrub JS, Bischof JC. Measurement and numerical analysis of freezing in solutions enclosed in a small container International Journal of Heat and Mass Transfer. 45: 1915-1931. DOI: 10.1016/S0017-9310(01)00290-3  1
2001 Leo PH, Lowengrub JS, Nie Q. On an elastically induced splitting instability Acta Materialia. 49: 2761-2772. DOI: 10.1016/S1359-6454(01)00179-3  1
2001 Angenent SB, Aronson DG, Betelu SI, Lowengrub JS. Focusing of an elongated hole in porous medium flow Physica D: Nonlinear Phenomena. 151: 228-252. DOI: 10.1016/S0167-2789(01)00150-6  1
2001 Hou TY, Lowengrub JS, Shelley MJ. Boundary Integral Methods for Multicomponent Fluids and Multiphase Materials Journal of Computational Physics. 169: 302-362. DOI: 10.1006/jcph.2000.6626  1
2001 Hooper R, Cristini V, Shakya S, Lowengrub JS, Derby JJ, Macosko CW. Modeling multiphase flows using a novel 3D adaptive remeshing algorithm Advances in Fluid Mechanics. 29: 33-42.  1
2000 Leo PH, Lowengrub JS, Nie Q. Microstructural evolution in orthotropic elastic media Journal of Computational Physics. 157: 44-88. DOI: 10.1006/jcph.1999.6359  1
1999 Longmire EK, Lowengrub JS, Gefroh DL. A comparison of experiments and simulations on pinch-off in round jets Proceedings of the 1999 3rd Asme/Jsme Joint Fluids Engineering Conference, Fedsm'99, San Francisco, California, Usa, 18-23 July 1999 (Cd-Rom). 1.  1
1998 Leo PH, Lowengrub JS, Jou HJ. A diffuse interface model for microstructural evolution in elastically stressed solids Acta Materialia. 46: 2113-2130.  1
1997 Jou HJ, Leo PH, Lowengrub JS. Microstructural Evolution in Inhomogeneous Elastic Media Journal of Computational Physics. 131: 109-148. DOI: 10.1006/jcph.1996.5581  1
1997 Hou TY, Lowengrub JS, Shelley MJ. The long-time motion of vortex sheets with surface tension Physics of Fluids. 9: 1933-1954.  1
1994 Beale JT, Hou TY, Lowengrub JS, Shelley MJ. Spatial and temporal stability issues for interfacial flows with surface tension Mathematical and Computer Modelling. 20: 1-27. DOI: 10.1016/0895-7177(94)90167-8  1
1994 Hou TY, Lowengrub JS, Shelley MJ. Removing the Stiffness from Interfacial Flows with Surface Tension Journal of Computational Physics. 114: 312-338. DOI: 10.1006/jcph.1994.1170  1
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