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Changchuan Yin, Ph.D. - Publications

Affiliations: 
2005 University of Illinois at Chicago, Chicago, IL, United States 
Area:
Mathematics, Computer Science
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Ren R, Yin C, S-T Yau S. kmer2vec: A Novel Method for Comparing DNA Sequences by word2vec Embedding. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 35593919 DOI: 10.1089/cmb.2021.0536  0.456
2022 Dong R, Pei S, Guan M, Yau SC, Yin C, He RL, Yau SS. Full Chromosomal Relationships Between Populations and the Origin of Humans. Frontiers in Genetics. 12: 828805. PMID 35186019 DOI: 10.3389/fgene.2021.828805  0.632
2021 Yin C, Yau SS. Inverted repeats in coronavirus SARS-CoV-2 genome manifest the evolution events. Journal of Theoretical Biology. 110885. PMID 34478743 DOI: 10.1016/j.jtbi.2021.110885  0.604
2021 Sun N, Pei S, He L, Yin C, He RL, Yau SS. Geometric construction of viral genome space and its applications. Computational and Structural Biotechnology Journal. 19: 4226-4234. PMID 34429843 DOI: 10.1016/j.csbj.2021.07.028  0.618
2021 Yin C. Latent periodicity-2 in coronavirus SARS-CoV-2 genome: evolutionary implications. Journal of Theoretical Biology. 110604. PMID 33508323 DOI: 10.1016/j.jtbi.2021.110604  0.383
2020 Dong R, Pei S, Yin C, He RL, Yau SS. Analysis of the Hosts and Transmission Paths of SARS-CoV-2 in the COVID-19 Outbreak. Genes. 11. PMID 32526937 DOI: 10.3390/genes11060637  0.603
2020 Sun N, Dong R, Pei S, Yin C, Yau SS. A New Method Based on Coding Sequence Density to Cluster Bacteria. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32392428 DOI: 10.1089/Cmb.2019.0509  0.727
2020 Yin C. Genotyping coronavirus SARS-CoV-2: Methods and implications. Genomics. PMID 32353474 DOI: 10.1016/J.Ygeno.2020.04.016  0.406
2019 Hoang T, Yin C, Yau SS. Splice sites detection using chaos game representation and neural network. Genomics. PMID 31704313 DOI: 10.1016/J.Ygeno.2019.10.018  0.595
2019 Luo X, Wei G, Yin C, Zuo H. Stephen Yau, a teacher and a friend Notices of the International Congress of Chinese Mathematicians. 7: 64-65. DOI: 10.4310/iccm.2019.v7.n2.a6  0.32
2018 Yin C. Encoding and Decoding DNA Sequences by Integer Chaos Game Representation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30517021 DOI: 10.1089/Cmb.2018.0173  0.546
2018 Ta M, Yin C, Smith GL, Xu W. A Workflow to Improve Variant Calling Accuracy in Molecular Barcoded Sequencing Reads. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30117742 DOI: 10.1089/cmb.2018.0110  0.406
2018 Dong R, Zhu Z, Yin C, He RL, Yau SS. A new method to cluster genomes based on cumulative Fourier power spectrum. Gene. PMID 29935353 DOI: 10.1016/J.Gene.2018.06.042  0.701
2017 Dong R, Zheng H, Tian K, Yau SC, Mao W, Yu W, Yin C, Yu C, He RL, Yang J, Yau SS. Virus Database and Online Inquiry System Based on Natural Vectors. Evolutionary Bioinformatics Online. 13: 1176934317746667. PMID 29308007 DOI: 10.1177/1176934317746667  0.68
2017 Yin C, Yau SS. A coevolution analysis for identifying protein-protein interactions by Fourier transform. Plos One. 12: e0174862. PMID 28430779 DOI: 10.1371/Journal.Pone.0174862  0.61
2016 Yin C. Identification of repeats in DNA sequences using nucleotide distribution uniformity. Journal of Theoretical Biology. PMID 27816675 DOI: 10.1016/J.Jtbi.2016.10.013  0.533
2016 Hoang T, Yin C, Yau SS. Numerical encoding of DNA sequences by Chaos Game Representation with application in similarity comparison. Genomics. PMID 27538895 DOI: 10.1016/J.Ygeno.2016.08.002  0.674
2016 Li Y, Tian K, Yin C, Lucy He R, Yau SS. Virus classification in 60-dimensional protein space. Molecular Phylogenetics and Evolution. PMID 26988414 DOI: 10.1016/J.Ympev.2016.03.009  0.686
2016 Yin C, Wang J. Periodic power spectrum with applications in detection of latent periodicities in DNA sequences. Journal of Mathematical Biology. PMID 26942584 DOI: 10.1007/S00285-016-0982-8  0.546
2015 Tian K, Yang X, Kong Q, Yin C, He RL, Yau SS. Two Dimensional Yau-Hausdorff Distance with Applications on Comparison of DNA and Protein Sequences. Plos One. 10: e0136577. PMID 26384293 DOI: 10.1371/Journal.Pone.0136577  0.679
2015 Yin C, Yau SS. An improved model for whole genome phylogenetic analysis by Fourier transform. Journal of Theoretical Biology. 382: 99-110. PMID 26151589 DOI: 10.1016/J.Jtbi.2015.06.033  0.692
2015 Zheng H, Yin C, Hoang T, He RL, Yang J, Yau SS. Ebolavirus classification based on natural vectors. Dna and Cell Biology. 34: 418-28. PMID 25803489 DOI: 10.1089/Dna.2014.2678  0.589
2015 Hoang T, Yin C, Zheng H, Yu C, Lucy He R, Yau SS. A new method to cluster DNA sequences using Fourier power spectrum. Journal of Theoretical Biology. 372: 135-45. PMID 25747773 DOI: 10.1016/J.Jtbi.2015.02.026  0.695
2015 Yin C. Representation of DNA sequences in genetic codon context with applications in exon and intron prediction. Journal of Bioinformatics and Computational Biology. 13: 1550004. PMID 25491390 DOI: 10.1142/S0219720015500043  0.533
2014 Yin C, Yin XE, Wang J. A novel method for comparative analysis of DNA sequences by Ramanujan-Fourier transform. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 21: 867-79. PMID 25302665 DOI: 10.1089/Cmb.2014.0120  0.579
2014 Yin C, Chen Y, Yau SS. A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering. Journal of Theoretical Biology. 359: 18-28. PMID 24911780 DOI: 10.1016/J.Jtbi.2014.05.043  0.676
2013 Yin C, Yoo D, Yau SS. Indian perspective Architecture for Advancement of Biomedical Telemedicine and mHealth System Journal of Medical and Bioengineering. 2: 80-83. DOI: 10.12720/Jomb.2.2.80-83  0.456
2010 Yu C, Liang Q, Yin C, He RL, Yau SS. A novel construction of genome space with biological geometry. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 17: 155-68. PMID 20360268 DOI: 10.1093/Dnares/Dsq008  0.71
2007 Yin C, Yau SS. Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence. Journal of Theoretical Biology. 247: 687-94. PMID 17509616 DOI: 10.1016/J.Jtbi.2007.03.038  0.674
2005 Yin C, Yau SS. A Fourier characteristic of coding sequences: origins and a non-Fourier approximation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 1153-65. PMID 16305326 DOI: 10.1089/Cmb.2005.12.1153  0.607
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