☰

Mark L. Farman - Publications

Affiliations: 
University of Kentucky, Lexington, KY 
Area:
Plant Pathology Agriculture, Microbiology Biology
Tree Info Similar researchers PubMed Report error

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Rahnama M, Wang B, Dostart J, Novikova O, Yackzan D, Yackzan A, Bruss H, Baker M, Jacob H, Zhang X, Lamb A, Stewart A, Heist M, Hoover J, Calie P, ... ... Farman ML, et al. Telomere Roles in Fungal Genome Evolution and Adaptation. Frontiers in Genetics. 12: 676751. PMID 34434216 DOI: 10.3389/fgene.2021.676751  0.41
2020 McCulloch MJ, Edwards S, Inocencio H, Machado F, Nuckles E, Farman M, Ward Gauthier NA, Vaillancourt L. Diversity and cross-infection potential of causing fruit rots in mixed-fruit orchards in Kentucky. Plant Disease. PMID 32870109 DOI: 10.1094/Pdis-06-20-1273-Re  0.392
2020 Rahnama M, Novikova O, Starnes JH, Zhang S, Chen L, Farman ML. Transposon-mediated telomere destabilization: a driver of genome evolution in the blast fungus. Nucleic Acids Research. PMID 32558886 DOI: 10.1093/Nar/Gkaa287  0.543
2019 Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, Tang H, Farman M, Cook D, White FF, Valent B, Liu S. Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus. Plos Genetics. 15: e1008272. PMID 31513573 DOI: 10.1371/Journal.Pgen.1008272  0.499
2019 Figueira ADR, Geraldino-Duarte PS, Nuñez AMP, Lent Jv, Galvino-Costa SBF, Farman M, Goodin MM. Characterization of Soybean yellow shoot virus, a New Member of the Family Potyviridae Infecting Soybean Plants in Brazil. Plant Disease. 103: 1172-1180. PMID 30907693 DOI: 10.1094/Pdis-06-18-1067-Re  0.396
2019 Valent B, Farman M, Tosa Y, Begerow D, Fournier E, Gladieux P, Islam MT, Kamoun S, Kemler M, Kohn LM, Lebrun MH, Stajich JE, Talbot NJ, Terauchi R, Tharreau D, et al. Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al. (MPP 20:2). Molecular Plant Pathology. 20: 173-179. PMID 30697917 DOI: 10.1111/Mpp.12778  0.478
2018 Yasuhara-Bell J, Pedley KF, Farman M, Valent B, Stack JP. Specific Detection of the Wheat Blast Pathogen (Magnaporthe oryzae Triticum) by Loop-Mediated Isothermal Amplification. Plant Disease. PDIS03180512RE. PMID 30320534 DOI: 10.1094/Pdis-03-18-0512-Re  0.343
2018 Buiate EAS, Xavier KV, Moore N, Torres MF, Farman ML, Schardl CL, Vaillancourt LJ. Correction to: A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola. Bmc Genomics. 19: 686. PMID 30231871 DOI: 10.1186/s12864-018-5073-3  0.304
2018 Gladieux P, Condon B, Ravel S, Soanes D, Maciel JLN, Nhani A, Chen L, Terauchi R, Lebrun MH, Tharreau D, Mitchell T, Pedley KF, Valent B, Talbot NJ, Farman M, et al. Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus. Mbio. 9. PMID 29487238 DOI: 10.1128/Mbio.01219-17  0.611
2017 Pieck ML, Ruck A, Farman ML, Peterson GL, Stack JP, Valent B, Pedley KF. Genomics-Based Marker Discovery and Diagnostic Assay Development for Wheat Blast. Plant Disease. 101: 103-109. PMID 30682315 DOI: 10.1094/Pdis-04-16-0500-Re  0.399
2017 Farman M, Peterson G, Chen L, Starnes J, Valent B, Bachi P, Murdock L, Hershman D, Pedley K, Fernandes JM, Bavaresco J. The Lolium Pathotype of Magnaporthe oryzae Recovered from a Single Blasted Wheat Plant in the United States. Plant Disease. 101: 684-692. PMID 30678560 DOI: 10.1094/Pdis-05-16-0700-Re  0.408
2017 Inoue Y, Vy TTP, Yoshida K, Asano H, Mitsuoka C, Asuke S, Anh VL, Cumagun CJR, Chuma I, Terauchi R, Kato K, Mitchell T, Valent B, Farman M, Tosa Y. Evolution of the wheat blast fungus through functional losses in a host specificity determinant. Science (New York, N.Y.). 357: 80-83. PMID 28684523 DOI: 10.1126/Science.Aam9654  0.407
2017 Jang C, Wang R, Wells J, Leon F, Farman M, Hammond J, Goodin MM. Genome sequence variation in the constricta strain dramatically alters the protein interaction and localization map of Potato yellow dwarf virus. The Journal of General Virology. PMID 28635588 DOI: 10.1099/Jgv.0.000771  0.398
2017 Buiate EA, Xavier KV, Moore N, Torres MF, Farman ML, Schardl CL, Vaillancourt LJ. A comparative genomic analysis of putative pathogenicity genes in the host-specific sibling species Colletotrichum graminicola and Colletotrichum sublineola. Bmc Genomics. 18: 67. PMID 28073340 DOI: 10.1186/S12864-016-3457-9  0.477
2016 Rouchka EC, Chariker JH, Harrison BJ, Park JW, Cao X, Pounds S, Raimondi S, Downing J, Ribeiro R, Rubnitz J, Lamba J, Daigle BJ, Burgess D, Gehrlich S, Carmen JC, ... ... Farman M, et al. Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016 Bmc Bioinformatics. 17: 297. PMID 28166713 DOI: 10.1186/S12859-016-1154-Y  0.372
2016 Minton RL, Cruz MA, Farman ML, Perez KE. Two complete mitochondrial genomes from Praticolella mexicana Perez, 2011 (Polygyridae) and gene order evolution in Helicoidea (Mollusca, Gastropoda). Zookeys. 137-154. PMID 27833437 DOI: 10.3897/Zookeys.626.9633  0.463
2016 Florea S, Phillips TD, Panaccione DG, Farman ML, Schardl CL. Chromosome-End Knockoff Strategy to Reshape Alkaloid Profiles of a Fungal Endophyte. G3 (Bethesda, Md.). PMID 27334939 DOI: 10.1534/G3.116.029686  0.542
2015 Bec S, Ward T, Farman M, O'Donnell K, Hershman D, Van Sanford D, Vaillancourt LJ. Characterization of Fusarium Strains Recovered From Wheat With Symptoms of Head Blight in Kentucky. Plant Disease. 99: 1622-1632. PMID 30695966 DOI: 10.1094/Pdis-06-14-0610-Re  0.331
2015 Okagaki LH, Nunes CC, Sailsbery J, Clay B, Brown D, John T, Oh Y, Young N, Fitzgerald M, Haas BJ, Zeng Q, Young S, Adiconis X, Fan L, Levin JZ, ... ... Farman ML, et al. Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi. G3 (Bethesda, Md.). PMID 26416668 DOI: 10.1534/G3.115.020057  0.503
2015 Gong X, Hurtado O, Wang B, Wu C, Yi M, Giraldo M, Valent B, Goodin M, Farman M. pFPL Vectors for High-Throughput Protein Localization in Fungi: Detecting Cytoplasmic Accumulation of Putative Effector Proteins. Molecular Plant-Microbe Interactions : Mpmi. 28: 107-21. PMID 25390188 DOI: 10.1094/Mpmi-05-14-0144-Ta  0.303
2014 Ramalho TO, Figueira AR, Sotero AJ, Wang R, Geraldino Duarte PS, Farman M, Goodin MM. Characterization of Coffee ringspot virus-Lavras: a model for an emerging threat to coffee production and quality. Virology. 385-396. PMID 25117897 DOI: 10.1016/J.Virol.2014.07.031  0.339
2014 Farman M, Calie P, Jaromczyk J, Moore N, Harris D, Schardl C. An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis Bmc Bioinformatics. 15. DOI: 10.1186/1471-2105-15-S10-P25  0.345
2014 Schardl CL, Young CA, Moore N, Krom N, Dupont PY, Pan J, Florea S, Webb JS, Jaromczyk J, Jaromczyk JW, Cox MP, Farman ML. Genomes of plant-associated clavicipitaceae Advances in Botanical Research. 70: 291-327. DOI: 10.1016/B978-0-12-397940-7.00010-0  0.393
2013 Schardl CL, Young CA, Pan J, Florea S, Takach JE, Panaccione DG, Farman ML, Webb JS, Jaromczyk J, Charlton ND, Nagabhyru P, Chen L, Shi C, Leuchtmann A. Currencies of mutualisms: sources of alkaloid genes in vertically transmitted epichloae. Toxins. 5: 1064-88. PMID 23744053 DOI: 10.3390/Toxins5061064  0.392
2013 Schardl CL, Young CA, Hesse U, Amyotte SG, Andreeva K, Calie PJ, Fleetwood DJ, Haws DC, Moore N, Oeser B, Panaccione DG, Schweri KK, Voisey CR, Farman ML, Jaromczyk JW, et al. Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci. Plos Genetics. 9: e1003323. PMID 23468653 DOI: 10.1371/Journal.Pgen.1003323  0.486
2013 Parke T, Farman M, Farnsworth E, Fox D, Jaromczyk JW, Jaromczyk J, Moore N, Schardl CL, Yoshida R, Calie P. Using HPC for teaching and learning bioinformatics software: Benefits and challenges Bmc Bioinformatics. 14. DOI: 10.1186/1471-2105-14-S17-A18  0.342
2012 Starnes JH, Thornbury DW, Novikova OS, Rehmeyer CJ, Farman ML. Telomere-targeted retrotransposons in the rice blast fungus Magnaporthe oryzae: agents of telomere instability. Genetics. 191: 389-406. PMID 22446319 DOI: 10.1534/Genetics.111.137950  0.769
2011 Farman ML. Targeted cloning of fungal telomeres. Methods in Molecular Biology (Clifton, N.J.). 722: 11-31. PMID 21590410 DOI: 10.1007/978-1-61779-040-9_2  0.527
2010 de Sá PB, Li H, Havens WM, Farman ML, Ghabrial SA. Overexpression of the victoriocin gene in Helminthosporium (Cochliobolus) victoriae enhances the antifungal activity of culture filtrates. Phytopathology. 100: 890-6. PMID 20701486 DOI: 10.1094/Phyto-100-9-0890  0.375
2010 Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, et al. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Proceedings of the National Academy of Sciences of the United States of America. 107: 11889-94. PMID 20547848 DOI: 10.1073/Pnas.1003391107  0.778
2010 Schwartz SL, Farman ML. Systematic overrepresentation of DNA termini and underrepresentation of subterminal regions among sequencing templates prepared from hydrodynamically sheared linear DNA molecules. Bmc Genomics. 11: 87. PMID 20122283 DOI: 10.1186/1471-2164-11-87  0.452
2009 Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, ... ... Farman ML, et al. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. Plos Genetics. 5: e1000618. PMID 19714214 DOI: 10.1371/Journal.Pgen.1000618  0.548
2009 Rehmeyer CJ, Li W, Kusaba M, Farman ML. The telomere-linked helicase (TLH) gene family in Magnaporthe oryzae: revised gene structure reveals a novel TLH-specific protein motif. Current Genetics. 55: 253-62. PMID 19360408 DOI: 10.1007/S00294-009-0240-3  0.75
2009 Wu C, Kim YS, Smith KM, Li W, Hood HM, Staben C, Selker EU, Sachs MS, Farman ML. Characterization of chromosome ends in the filamentous fungus Neurospora crassa. Genetics. 181: 1129-45. PMID 19104079 DOI: 10.1534/Genetics.107.084392  0.523
2007 Farman ML. Telomeres in the rice blast fungus Magnaporthe oryzae: the world of the end as we know it. Fems Microbiology Letters. 273: 125-32. PMID 17610516 DOI: 10.1111/J.1574-6968.2007.00812.X  0.523
2007 Chakrabarty R, Banerjee R, Chung SM, Farman M, Citovsky V, Hogenhout SA, Tzfira T, Goodin M. PSITE vectors for stable integration or transient expression of autofluorescent protein fusions in plants: probing Nicotiana benthamiana-virus interactions. Molecular Plant-Microbe Interactions : Mpmi. 20: 740-50. PMID 17601162 DOI: 10.1094/Mpmi-20-7-0740  0.324
2007 Betts MF, Tucker SL, Galadima N, Meng Y, Patel G, Li L, Donofrio N, Floyd A, Nolin S, Brown D, Mandel MA, Mitchell TK, Xu JR, Dean RA, Farman ML, et al. Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1035-49. PMID 17600737 DOI: 10.1016/J.Fgb.2007.05.001  0.389
2007 Meng Y, Patel G, Heist M, Betts MF, Tucker SL, Galadima N, Donofrio NM, Brown D, Mitchell TK, Li L, Xu JR, Orbach M, Thon M, Dean RA, Farman ML. A systematic analysis of T-DNA insertion events in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1050-64. PMID 17544743 DOI: 10.1016/J.Fgb.2007.04.002  0.417
2006 Peyyala R, Farman ML. Magnaporthe oryzae isolates causing gray leaf spot of perennial ryegrass possess a functional copy of the AVR1-CO39 avirulence gene. Molecular Plant Pathology. 7: 157-65. PMID 20507436 DOI: 10.1111/J.1364-3703.2006.00325.X  0.34
2006 Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, ... ... Farman M, et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature. 444: 97-101. PMID 17080091 DOI: 10.1038/Nature05248  0.519
2006 Soderlund C, Haller K, Pampanwar V, Ebbole D, Farman M, Orbach MJ, Wang GL, Wing R, Xu JR, Brown D, Mitchell T, Dean R. MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions. Molecular Plant-Microbe Interactions : Mpmi. 19: 1055-61. PMID 17022169 DOI: 10.1094/Mpmi-19-1055  0.462
2006 Rehmeyer C, Li W, Kusaba M, Kim YS, Brown D, Staben C, Dean R, Farman M. Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzae. Nucleic Acids Research. 34: 4685-701. PMID 16963777 DOI: 10.1093/Nar/Gkl588  0.775
2006 Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, ... ... Farman M, et al. Erratum: Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus Nature. 439: 502-502. DOI: 10.1038/Nature04572  0.501
2005 Farman ML, Kim YS. Telomere hypervariability in Magnaporthe oryzae. Molecular Plant Pathology. 6: 287-98. PMID 20565657 DOI: 10.1111/J.1364-3703.2005.00285.X  0.427
2005 Luo CX, Yin LF, Koyanagi S, Farman ML, Kusaba M, Yaegashi H. Genetic Mapping and Chromosomal Assignment of Magnaporthe oryzae Avirulence Genes AvrPik, AvrPiz, and AvrPiz-t Controlling Cultivar Specificity on Rice. Phytopathology. 95: 640-7. PMID 18943780 DOI: 10.1094/Phyto-95-0640  0.379
2005 Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, ... ... Farman M, et al. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature. 438: 1151-6. PMID 16372009 DOI: 10.1038/Nature04332  0.54
2005 Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, BaÅŸtürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 438: 1105-15. PMID 16372000 DOI: 10.1038/Nature04341  0.534
2005 Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/Nature03449  0.771
2005 Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, et al. 'PACLIMS': a component LIM system for high-throughput functional genomic analysis. Bmc Bioinformatics. 6: 94. PMID 15826298 DOI: 10.1186/1471-2105-6-94  0.502
2005 Li W, Rehmeyer CJ, Staben C, Farman ML. TruMatch--a BLAST post-processor that identifies bona fide sequence matches to genome assemblies. Bioinformatics (Oxford, England). 21: 2097-8. PMID 15671115 DOI: 10.1093/Bioinformatics/Bti257  0.759
2005 Li W, Rehmeyer CJ, Staben C, Farman ML. TERMINUS--Telomeric End-Read Mining IN Unassembled Sequences. Bioinformatics (Oxford, England). 21: 1695-8. PMID 15585532 DOI: 10.1093/Bioinformatics/Bti181  0.769
2004 Farman ML, Gilkerson JW, Jaromczyk JW, Staben C. Repeatassembler: A package for annotation of full-length repetitive DNA sequences in fungal genomes Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 464-467.  0.398
2003 Kim YS, Dixon EW, Vincelli P, Farman ML. Field Resistance to Strobilurin (Q(o)I) Fungicides in Pyricularia grisea Caused by Mutations in the Mitochondrial Cytochrome b Gene. Phytopathology. 93: 891-900. PMID 18943171 DOI: 10.1094/Phyto.2003.93.7.891  0.33
2002 Sukno SA, Taylor AM, Farman ML. Genetic Uniformity Among Isolates of Peronospora tabacina, the Tobacco Blue Mold Pathogen. Phytopathology. 92: 1236-44. PMID 18944250 DOI: 10.1094/Phyto.2002.92.11.1236  0.344
2002 Sukno SA, Taylor AM, Farman M. Development of Contamination-Free Restriction Fragment Length Polymorphism Probes for the Obligate Biotroph Peronospora tabacina, an Oomycete Causing Blue Mold of Tobacco. Phytopathology. 92: 1227-35. PMID 18944249 DOI: 10.1094/Phyto.2002.92.11.1227  0.364
2002 Farman ML. Pyricularia grisea Isolates Causing Gray Leaf Spot on Perennial Ryegrass (Lolium perenne) in the United States: Relationship to P. grisea Isolates from Other Host Plants. Phytopathology. 92: 245-54. PMID 18943995 DOI: 10.1094/Phyto.2002.92.3.245  0.371
2002 Farman ML, Eto Y, Nakao T, Tosa Y, Nakayashiki H, Mayama S, Leong SA. Analysis of the structure of the AVR1-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Molecular Plant-Microbe Interactions : Mpmi. 15: 6-16. PMID 11843304 DOI: 10.1094/Mpmi.2002.15.1.6  0.374
2002 Farman ML. Meiotic deletion at the BUF1 locus of the fungus Magnaporthe grisea is controlled by interaction with the homologous chromosome. Genetics. 160: 137-48. PMID 11805051  0.329
1998 Farman ML, Leong SA. Chromosome walking to the AVR1-CO39 avirulence gene of Magnaporthe grisea: Discrepancy between the physical and genetic maps Genetics. 150: 1049-1058. PMID 9799257  0.345
1997 Nitta N, Farman ML, Leong SA. Genome organization of Magnaporthe grisea: Integration of genetic maps, clustering of transposable elements and identification of genome duplications and rearrangements Theoretical and Applied Genetics. 95: 20-32. DOI: 10.1007/S001220050528  0.433
1996 Farman ML, Taura S, Leong SA. The Magnaporthe grisea DNA fingerprinting probe MGR586 contains the 3' end of an inverted repeat transposon Molecular and General Genetics. 251: 675-681. PMID 8757398 DOI: 10.1007/Bf02174116  0.436
1996 Farman ML, Tosa Y, Nitta N, Leong SA. MAGGY, a retrotransposon in the genome of the rice blast fungus Magnaporthe grisea Molecular and General Genetics. 251: 665-674. PMID 8757397 DOI: 10.1007/Bf02174115  0.508
1993 Skinner DZ, Budde AD, Farman ML, Smith JR, Leung H, Leong SA. Genome organization of Magnaporthe grisea: genetic map, electrophoretic karyotype, and occurrence of repeated DNAs Theoretical and Applied Genetics: International Journal of Plant Breeding Research. 87: 545-557. DOI: 10.1007/Bf00221877  0.471
1992 Farman ML, Oliver RP. Transformation frequencies are enhanced and vector DNA is targeted during retransformation of Leptosphaeria maculans, a fungal plant pathogen Mgg Molecular &Amp; General Genetics. 231: 243-247. PMID 1736094 DOI: 10.1007/Bf00279797  0.515
1988 Farman ML, Oliver RP. The transformation of protoplasts of Leptosphaeria maculans to hygromycin B resistance Current Genetics. 13: 327-330. DOI: 10.1007/Bf00424427  0.52
Show low-probability matches.