Brian Caffo - Publications

Johns Hopkins University, Baltimore, MD 
Biostatistics Biology

199 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Choe AS, Tang B, Smith KR, Honari H, Lindquist MA, Caffo BS, Pekar JJ. Phase-locking of resting-state brain networks with the gastric basal electrical rhythm. Plos One. 16: e0244756. PMID 33400717 DOI: 10.1371/journal.pone.0244756  0.36
2021 Zhao Y, Ficek B, Webster K, Frangakis C, Caffo B, Hillis AE, Faria A, Tsapkini K. White Matter Integrity Predicts Electrical Stimulation (tDCS) and Language Therapy Effects in Primary Progressive Aphasia. Neurorehabilitation and Neural Repair. 35: 44-57. PMID 33317422 DOI: 10.1177/1545968320971741  0.44
2020 Faria AV, Zhao Y, Ye C, Hsu J, Yang K, Cifuentes E, Wang L, Mori S, Miller M, Caffo B, Sawa A. Multimodal MRI assessment for first episode psychosis: A major change in the thalamus and an efficient stratification of a subgroup. Human Brain Mapping. PMID 33377594 DOI: 10.1002/hbm.25276  0.44
2020 Zhao Y, Caffo BS, Wang B, Li CR, Luo X. A whole-brain modeling approach to identify individual and group variations in functional connectivity. Brain and Behavior. e01942. PMID 33210469 DOI: 10.1002/brb3.1942  0.44
2020 Mejia AF, Nebel MB, Wang Y, Caffo BS, Guo Y. Template Independent Component Analysis: Targeted and Reliable Estimation of Subject-level Brain Networks using Big Data Population Priors. Journal of the American Statistical Association. 115: 1151-1177. PMID 33060872 DOI: 10.1080/01621459.2019.1679638  0.32
2020 Wang B, Luo X, Zhao Y, Caffo B. Semiparametric partial common principal component analysis for covariance matrices. Biometrics. PMID 32935852 DOI: 10.1111/Biom.13369  0.44
2020 Zhao Y, Lindquist MA, Caffo BS. Sparse Principal Component based High-Dimensional Mediation Analysis. Computational Statistics & Data Analysis. 142. PMID 32863492 DOI: 10.1016/J.Csda.2019.106835  0.44
2020 Wu D, Chang L, Ernst TM, Caffo BS, Oishi K. Developmental score of the infant brain: characterizing diffusion MRI in term- and preterm-born infants. Brain Structure & Function. PMID 32804327 DOI: 10.1007/s00429-020-02132-4  0.36
2020 Zhao Y, Li L, Caffo BS. Multimodal neuroimaging data integration and pathway analysis. Biometrics. PMID 32789850 DOI: 10.1111/Biom.13351  0.44
2020 Vogelstein JT, Powell M, Koenecke A, Xiong R, Fischer N, Huq S, Khalafallah AM, Caffo B, Stuart EA, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, et al. Alpha-1 adrenergic receptor antagonists for preventing acute respiratory distress syndrome and death from cytokine storm syndrome. Arxiv. PMID 32550250  0.52
2020 Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM. Corrigendum to: Neuroconductor: an R platform for medical imaging analysis. Biostatistics (Oxford, England). PMID 32065220 DOI: 10.1093/Biostatistics/Kxaa006  0.44
2019 McAuliffe D, Zhao Y, Pillai AS, Ament K, Adamek J, Caffo BS, Mostofsky SH, Ewen JB. Learning of skilled movements via imitation in ASD. Autism Research : Official Journal of the International Society For Autism Research. PMID 31876983 DOI: 10.1002/Aur.2253  0.44
2019 Zhao Y, Wang B, Mostofsky SH, Caffo BS, Luo X. Covariate Assisted Principal regression for covariance matrix outcomes. Biostatistics (Oxford, England). PMID 31851318 DOI: 10.1093/biostatistics/kxz057  0.44
2019 de Aguiar V, Zhao Y, Ficek BN, Webster K, Rofes A, Wendt H, Frangakis C, Caffo B, Hillis AE, Rapp B, Tsapkini K. Cognitive and language performance predicts effects of spelling intervention and tDCS in Primary Progressive Aphasia. Cortex; a Journal Devoted to the Study of the Nervous System and Behavior. 124: 66-84. PMID 31838450 DOI: 10.1016/J.Cortex.2019.11.001  0.44
2019 de Aguiar V, Zhao Y, Faria A, Ficek B, Webster KT, Wendt H, Wang Z, Hillis AE, Onyike CU, Frangakis C, Caffo B, Tsapkini K. Brain volumes as predictors of tDCS effects in primary progressive aphasia. Brain and Language. 200: 104707. PMID 31704518 DOI: 10.1016/J.Bandl.2019.104707  0.44
2019 Ye C, Albert M, Brown T, Bilgel M, Hsu J, Ma T, Caffo B, Miller MI, Mori S, Oishi K. Extended multimodal whole-brain anatomical covariance analysis: detection of disrupted correlation networks related to amyloid deposition. Heliyon. 5: e02074. PMID 31372540 DOI: 10.1016/J.Heliyon.2019.E02074  0.36
2019 Ficek BN, Wang Z, Zhao Y, Webster KT, Desmond JE, Hillis AE, Frangakis C, Faria AV, Caffo B, Tsapkini K. "The effect of tDCS on functional connectivity in primary progressive aphasia" NeuroImage: Clinical, volume 19 (2018), pages 703-715. Neuroimage. Clinical. 101734. PMID 30878405 DOI: 10.1016/J.Nicl.2019.101734  0.44
2019 Shappell H, Caffo BS, Pekar JJ, Lindquist MA. Improved state change estimation in dynamic functional connectivity using hidden semi-Markov models. Neuroimage. PMID 30753927 DOI: 10.1016/J.Neuroimage.2019.02.013  0.36
2019 Lindquist MA, Geuter S, Wager TD, Caffo BS. Modular preprocessing pipelines can reintroduce artifacts into fMRI data. Human Brain Mapping. PMID 30666750 DOI: 10.1002/Hbm.24528  0.36
2018 Ficek BN, Wang Z, Zhao Y, Webster KT, Desmond JE, Hillis AE, Frangakis C, Vasconcellos Faria A, Caffo B, Tsapkini K. The effect of tDCS on functional connectivity in primary progressive aphasia. Neuroimage. Clinical. 19: 703-715. PMID 30009127 DOI: 10.1016/J.Nicl.2018.05.023  0.44
2018 Mejia AF, Nebel MB, Barber AD, Choe AS, Pekar JJ, Caffo BS, Lindquist MA. Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. Neuroimage. PMID 29391241 DOI: 10.1016/J.Neuroimage.2018.01.029  0.36
2018 Muschelli J, Gherman A, Fortin JP, Avants B, Whitcher B, Clayden JD, Caffo BS, Crainiceanu CM. Neuroconductor: an R platform for medical imaging analysis. Biostatistics (Oxford, England). PMID 29325029 DOI: 10.1093/Biostatistics/Kxx068  0.44
2017 Chen S, Liu K, Yang Y, Xu Y, Lee S, Lindquist M, Caffo BS, Vogelstein JT. An M-estimator for reduced-rank system identification. Pattern Recognition Letters. 86: 76-81. PMID 29391659 DOI: 10.1016/J.Patrec.2016.12.012  0.6
2017 Webb-Vargas Y, Chen S, Fisher A, Mejia A, Xu Y, Crainiceanu C, Caffo B, Lindquist MA. Big Data and Neuroimaging. Statistics in Biosciences. 9: 543-558. PMID 29335670 DOI: 10.1007/S12561-017-9195-Y  0.6
2017 Sair HI, Hannawi Y, Li S, Kornbluth J, Demertzi A, Di Perri C, Chabanne R, Jean B, Benali H, Perlbarg V, Pekar J, Luyt CE, Galanaud D, Velly L, Puybasset L, ... ... Caffo B, et al. Early Functional Connectome Integrity and 1-Year Recovery in Comatose Survivors of Cardiac Arrest. Radiology. 162161. PMID 29043908 DOI: 10.1148/Radiol.2017162161  0.6
2017 Syed MF, Lindquist M, Pillai JJ, Agarwal S, Gujar SK, Choe AS, Caffo BS, Sair HI. Dynamic functional connectivity states between the dorsal and ventral sensorimotor networks revealed by Dynamic Conditional Correlation analysis of resting state functional MRI. Brain Connectivity. PMID 28969437 DOI: 10.1089/Brain.2017.0533  0.6
2017 Choe AS, Nebel MB, Barber AD, Cohen JR, Xu Y, Pekar JJ, Caffo B, Lindquist MA. Comparing test-retest reliability of dynamic functional connectivity methods. Neuroimage. PMID 28687517 DOI: 10.1016/J.Neuroimage.2017.07.005  0.52
2017 Chén OY, Crainiceanu C, Ogburn EL, Caffo BS, Wager TD, Lindquist MA. High-dimensional multivariate mediation with application to neuroimaging data. Biostatistics (Oxford, England). PMID 28637279 DOI: 10.1093/Biostatistics/Kxx027  0.36
2017 Yahyavi-Firouz-Abadi N, Pillai JJ, Lindquist MA, Calhoun VD, Agarwal S, Airan RD, Caffo B, Gujar B, Sair HI. Presurgical Brain Mapping of the Ventral Somatomotor Network in Patients with Brain Tumors Using Resting-State fMRI. Ajnr. American Journal of Neuroradiology. PMID 28364005 DOI: 10.3174/Ajnr.A5132  0.6
2017 Mejia AF, Nebel MB, Eloyan A, Caffo B, Lindquist MA. PCA leverage: outlier detection for high-dimensional functional magnetic resonance imaging data. Biostatistics (Oxford, England). PMID 28334131 DOI: 10.1093/Biostatistics/Kxw050  0.36
2017 Chen S, Huang L, Qiu H, Nebel MB, Mostofsky SH, Pekar JJ, Lindquist MA, Eloyan A, Caffo BS. Parallel group independent component analysis for massive fMRI data sets. Plos One. 12: e0173496. PMID 28278208 DOI: 10.1371/Journal.Pone.0173496  0.6
2016 Yue C, Zipunnikov V, Bazin PL, Pham D, Reich D, Crainiceanu C, Caffo B. Parametrization of white matter manifold-like structures using principal surfaces. Journal of the American Statistical Association. 111: 1050-1060. PMID 28090127 DOI: 10.1080/01621459.2016.1164050  0.6
2016 Kang J, Caffo B, Liu H. Editorial: Recent Advances and Challenges on Big Data Analysis in Neuroimaging. Frontiers in Neuroscience. 10: 505. PMID 27895547 DOI: 10.3389/Fnins.2016.00505  0.44
2016 Coughlin JM, Wang Y, Minn I, Bienko N, Ambinder EB, Xu X, Peters ME, Dougherty JW, Vranesic M, Koo SM, Ahn HH, Lee M, Cottrell C, Sair HI, Sawa A, ... ... Caffo B, et al. Imaging of Glial Cell Activation and White Matter Integrity in Brains of Active and Recently Retired National Football League Players. Jama Neurology. PMID 27893897 DOI: 10.1001/Jamaneurol.2016.3764  0.6
2016 Fisher A, Caffo B, Schwartz B, Zipunnikov V. Fast, Exact Bootstrap Principal Component Analysis for p > 1 million. Journal of the American Statistical Association. 111: 846-860. PMID 27616801 DOI: 10.1080/01621459.2015.1062383  1
2016 Airan RD, Vogelstein JT, Pillai JJ, Caffo B, Pekar JJ, Sair HI. Factors affecting characterization and localization of interindividual differences in functional connectivity using MRI. Human Brain Mapping. PMID 27012314 DOI: 10.1002/Hbm.23150  1
2016 Barber AD, Caffo BS, Pekar JJ, Mostofsky SH. Decoupling of reaction time-related default mode network activity with cognitive demand. Brain Imaging and Behavior. PMID 27003584 DOI: 10.1007/s11682-016-9543-4  1
2016 Jha AK, Caffo B, Frey EC. A no-gold-standard technique for objective assessment of quantitative nuclear-medicine imaging methods. Physics in Medicine and Biology. 61: 2780-2800. PMID 26982626 DOI: 10.1088/0031-9155/61/7/2780  1
2016 Harrison DM, Li X, Liu H, Jones CK, Caffo B, Calabresi PA, van Zijl P. Lesion Heterogeneity on High-Field Susceptibility MRI Is Associated with Multiple Sclerosis Severity. Ajnr. American Journal of Neuroradiology. PMID 26939635 DOI: 10.3174/Ajnr.A4726  1
2016 Qiu H, Han F, Liu H, Caffo B. Joint Estimation of Multiple Graphical Models from High Dimensional Time Series. Journal of the Royal Statistical Society. Series B, Statistical Methodology. 78: 487-504. PMID 26924939 DOI: 10.1111/rssb.12123  0.44
2016 Li S, Chen S, Yue C, Caffo B. A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data. Frontiers in Neuroscience. 10: 15. PMID 26858592 DOI: 10.3389/fnins.2016.00015  1
2016 Qiu H, Han F, Liu H, Caffo B. Joint estimation of multiple graphical models from high dimensional time series Journal of the Royal Statistical Society. Series B: Statistical Methodology. 78: 487-504. DOI: 10.1111/rssb.12123  1
2015 Qiu H, Xu S, Han F, Liu H, Caffo B. Robust Estimation of Transition Matrices in High Dimensional Heavy-tailed Vector Autoregressive Processes. Proceedings of the ... International Conference On Machine Learning. International Conference On Machine Learning. 37: 1843-1851. PMID 28133642  0.44
2015 Sair HI, Yahyavi-Firouz-Abadi N, Calhoun VD, Airan RD, Agarwal S, Intrapiromkul J, Choe AS, Gujar SK, Caffo B, Lindquist MA, Pillai JJ. Presurgical brain mapping of the language network in patients with brain tumors using resting-state fMRI: Comparison with task fMRI. Human Brain Mapping. PMID 26663615 DOI: 10.1002/Hbm.23075  0.6
2015 Choe AS, Jones CK, Joel SE, Muschelli J, Belegu V, Caffo BS, Lindquist MA, van Zijl PC, Pekar JJ. Reproducibility and Temporal Structure in Weekly Resting-State fMRI over a Period of 3.5 Years. Plos One. 10: e0140134. PMID 26517540 DOI: 10.1371/Journal.Pone.0140134  1
2015 Rock C, Thom KA, Harris AD, Li S, Morgan D, Milstone AL, Caffo B, Joshi M, Leekha S. A Multicenter Longitudinal Study of Hospital-Onset Bacteremia: Time for a New Quality Outcome Measure? Infection Control and Hospital Epidemiology. 1-6. PMID 26493213 DOI: 10.1017/Ice.2015.261  1
2015 Jha AK, Song N, Caffo B, Frey EC. Objective evaluation of reconstruction methods for quantitative SPECT imaging in the absence of ground truth. Proceedings of Spie--the International Society For Optical Engineering. 9416: 94161K. PMID 26430292 DOI: 10.1117/12.2081286  1
2015 Sharer E, Crocetti D, Muschelli J, Barber AD, Nebel MB, Caffo BS, Pekar JJ, Mostofsky SH. Neural Correlates of Visuomotor Learning in Autism. Journal of Child Neurology. 30: 1877-86. PMID 26350725 DOI: 10.1177/0883073815600869  1
2015 Ng KL, Gibson EM, Hubbard R, Yang J, Caffo B, O'Brien RJ, Krakauer JW, Zeiler SR. Fluoxetine Maintains a State of Heightened Responsiveness to Motor Training Early After Stroke in a Mouse Model. Stroke; a Journal of Cerebral Circulation. 46: 2951-60. PMID 26294676 DOI: 10.1161/Strokeaha.115.010471  1
2015 Gaddis A, Rosch KS, Dirlikov B, Crocetti D, MacNeil L, Barber AD, Muschelli J, Caffo B, Pekar JJ, Mostofsky SH. Motor overflow in children with attention-deficit/hyperactivity disorder is associated with decreased extent of neural activation in the motor cortex. Psychiatry Research. 233: 488-95. PMID 26272039 DOI: 10.1016/J.Pscychresns.2015.08.001  0.4
2015 Hiruy H, Fuchs EJ, Marzinke MA, Bakshi RP, Breakey JC, Aung WS, Manohar M, Yue C, Caffo BS, Du Y, Abebe KZ, Spiegel H, Rohan LC, McGowan I, Hendrix CW. A Phase 1 Randomized, Blinded Comparison of the Pharmacokinetics and Colonic Distribution of Three Candidate Rectal Microbicide Formulations of Tenofovir 1% Gel with Simulated Unprotected Sex (CHARM-02). Aids Research and Human Retroviruses. PMID 26227279 DOI: 10.1089/Aid.2015.0098  1
2015 Harrison DM, Roy S, Oh J, Izbudak I, Pham D, Courtney S, Caffo B, Jones CK, van Zijl P, Calabresi PA. Association of Cortical Lesion Burden on 7-T Magnetic Resonance Imaging With Cognition and Disability in Multiple Sclerosis. Jama Neurology. PMID 26192316 DOI: 10.1001/Jamaneurol.2015.1241  1
2015 Yue C, Chen S, Sair HI, Airan R, Caffo BS. Estimating a graphical intra-class correlation coefficient (GICC) using multivariate probit-linear mixed models. Computational Statistics & Data Analysis. 89: 126-133. PMID 26190878 DOI: 10.1016/j.csda.2015.02.012  0.6
2015 Leyva FJ, Fuchs EJ, Bakshi RP, Carballo-Diéguez A, Ventuneac A, Yue C, Caffo BS, Du Y, Torbenson MS, Li L, Mullin GE, Lee LA, Rohan LC, Anton PA, Hendrix CW. Simultaneous evaluation of safety, acceptability, peri-coital kinetics, and ex vivo pharmacodynamics comparing four rectal microbicide vehicle candidates. Aids Research and Human Retroviruses. PMID 26066390 DOI: 10.1089/Aid.2015.0086  1
2015 Zhang T, Wu J, Li F, Caffo B, Boatman-Reich D. A Dynamic Directional Model for Effective Brain Connectivity using Electrocorticographic (ECoG) Time Series. Journal of the American Statistical Association. 110: 93-106. PMID 25983358 DOI: 10.1080/01621459.2014.988213  1
2015 Yang J, Shmuelof L, Xiao L, Krakauer JW, Caffo B. On tests of activation map dimensionality for fMRI-based studies of learning. Frontiers in Neuroscience. 9: 85. PMID 25926766 DOI: 10.3389/Fnins.2015.00085  1
2015 Mejia AF, Nebel MB, Shou H, Crainiceanu CM, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA. Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. Neuroimage. 112: 14-29. PMID 25731998 DOI: 10.1016/J.Neuroimage.2015.02.042  1
2015 Hannawi Y, Lindquist MA, Caffo BS, Sair HI, Stevens RD. Resting brain activity in disorders of consciousness: a systematic review and meta-analysis. Neurology. 84: 1272-80. PMID 25713001 DOI: 10.1212/Wnl.0000000000001404  1
2015 Lee S, Caffo BS, Lakshmanan B, Pham DL. Evaluating Model Misspecification in Independent Component Analysis. Journal of Statistical Computation and Simulation. 85: 1151-1164. PMID 25642002 DOI: 10.1080/00949655.2013.867961  1
2015 Barber AD, Jacobson LA, Wexler JL, Nebel MB, Caffo BS, Pekar JJ, Mostofsky SH. Connectivity supporting attention in children with attention deficit hyperactivity disorder. Neuroimage. Clinical. 7: 68-81. PMID 25610768 DOI: 10.1016/J.Nicl.2014.11.011  1
2015 Coughlin JM, Wang Y, Munro CA, Ma S, Yue C, Chen S, Airan R, Kim PK, Adams AV, Garcia C, Higgs C, Sair HI, Sawa A, Smith G, Lyketsos CG, ... Caffo B, et al. Neuroinflammation and brain atrophy in former NFL players: An in vivo multimodal imaging pilot study. Neurobiology of Disease. 74: 58-65. PMID 25447235 DOI: 10.1016/J.Nbd.2014.10.019  1
2015 Ament K, Mejia A, Buhlman R, Erklin S, Caffo B, Mostofsky S, Wodka E. Evidence for specificity of motor impairments in catching and balance in children with autism. Journal of Autism and Developmental Disorders. 45: 742-51. PMID 25231287 DOI: 10.1007/S10803-014-2229-0  1
2015 Yue C, Chen S, Sair HI, Airan R, Caffo BS. Estimating a graphical intra-class correlation coefficient (GICC) using multivariate probit-linear mixed models Computational Statistics and Data Analysis. 89: 126-133. DOI: 10.1016/j.csda.2015.02.012  1
2015 Qiu H, Han F, Liu H, Caffo B. Robust portfolio optimization Advances in Neural Information Processing Systems. 2015: 46-54.  1
2015 Qiu H, Xu S, Han F, Liu H, Caffo B. Robust estimation of transition matrices in high dimensional heavy-tailed vector autoregressive processes 32nd International Conference On Machine Learning, Icml 2015. 3: 1843-1851.  1
2014 Zipunnikov V, Greven S, Shou H, Caffo B, Reich DS, Crainiceanu C. Longitudinal High-Dimensional Principal Components Analysis with Application to Diffusion Tensor Imaging of Multiple Sclerosis. The Annals of Applied Statistics. 8: 2175-2202. PMID 25663955 DOI: 10.1214/14-Aoas748  1
2014 Lee KJ, Jones GL, Caffo BS, Bassett SS. Spatial Bayesian Variable Selection Models on Functional Magnetic Resonance Imaging Time-Series Data. Bayesian Analysis (Online). 9: 699-732. PMID 25530824 DOI: 10.1214/14-Ba873  1
2014 Swihart BJ, Caffo BS, Crainiceanu CM. A unifying framework for marginalized random intercept models of correlated binary outcomes. International Statistical Review = Revue Internationale De Statistique. 82: 275-295. PMID 25342871 DOI: 10.1111/Insr.12035  1
2014 Lindquist MA, Xu Y, Nebel MB, Caffo BS. Evaluating dynamic bivariate correlations in resting-state fMRI: a comparison study and a new approach. Neuroimage. 101: 531-46. PMID 24993894 DOI: 10.1016/J.Neuroimage.2014.06.052  1
2014 Schreiber JM, Lanham DC, Trescher WH, Sparks SE, Wassif CA, Caffo BS, Porter FD, Tierney E, Gropman AL, Ewen JB. Variations in EEG discharges predict ADHD severity within individual Smith-Lemli-Opitz patients. Neurology. 83: 151-9. PMID 24920862 DOI: 10.1212/Wnl.0000000000000565  1
2014 Shou H, Eloyan A, Nebel MB, Mejia A, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA, Crainiceanu CM. Shrinkage prediction of seed-voxel brain connectivity using resting state fMRI. Neuroimage. 102: 938-44. PMID 24879924 DOI: 10.1016/J.Neuroimage.2014.05.043  1
2014 Shmuelof L, Yang J, Caffo B, Mazzoni P, Krakauer JW. The neural correlates of learned motor acuity. Journal of Neurophysiology. 112: 971-80. PMID 24848466 DOI: 10.1152/Jn.00897.2013  1
2014 Muschelli J, Nebel MB, Caffo BS, Barber AD, Pekar JJ, Mostofsky SH. Reduction of motion-related artifacts in resting state fMRI using aCompCor. Neuroimage. 96: 22-35. PMID 24657780 DOI: 10.1016/j.neuroimage.2014.03.028  1
2014 Eloyan A, Li S, Muschelli J, Pekar JJ, Mostofsky SH, Caffo BS. Analytic programming with FMRI data: a quick-start guide for statisticians using R. Plos One. 9: e89470. PMID 24586801 DOI: 10.1371/Journal.Pone.0089470  1
2014 Coughlin JM, Wang Y, Ma S, Yue C, Kim PK, Adams AV, Roosa HV, Gage KL, Stathis M, Rais R, Rojas C, McGlothan JL, Watkins CC, Sacktor N, Guilarte TR, ... ... Caffo B, et al. Regional brain distribution of translocator protein using [(11)C]DPA-713 PET in individuals infected with HIV. Journal of Neurovirology. 20: 219-32. PMID 24567030 DOI: 10.1007/S13365-014-0239-5  1
2014 Thom KA, Li S, Custer M, Preas MA, Rew CD, Cafeo C, Leekha S, Caffo BS, Scalea TM, Lissauer ME. Successful implementation of a unit-based quality nurse to reduce central line-associated bloodstream infections. American Journal of Infection Control. 42: 139-43. PMID 24360354 DOI: 10.1016/j.ajic.2013.08.006  1
2014 Risk BB, Matteson DS, Ruppert D, Eloyan A, Caffo BS. An evaluation of independent component analyses with an application to resting-state fMRI. Biometrics. 70: 224-36. PMID 24350655 DOI: 10.1111/Biom.12111  1
2014 Nebel MB, Joel SE, Muschelli J, Barber AD, Caffo BS, Pekar JJ, Mostofsky SH. Disruption of functional organization within the primary motor cortex in children with autism. Human Brain Mapping. 35: 567-80. PMID 23118015 DOI: 10.1002/hbm.22188  1
2014 Bobb JF, Schwartz BS, Davatzikos C, Caffo B. Cross-sectional and longitudinal association of body mass index and brain volume. Human Brain Mapping. 35: 75-88. PMID 23008165 DOI: 10.1002/Hbm.22159  1
2014 Sidhu G, Caffo B. Moneybarl: Exploiting pitcher decision-making using reinforcement learning Annals of Applied Statistics. 8: 926-955. DOI: 10.1214/13-Aoas712  1
2013 Griswold ME, Swihart BJ, Caffo BS, Zeger SL. Practical Marginalized Multilevel Models. Stat. 2. PMID 24357884 DOI: 10.1002/sta4.22  1
2013 Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel MB, Caffo B, Lindquist MA, Crainiceanu CM. Quantifying the reliability of image replication studies: The image intraclass correlation coefficient (I2C2) Cognitive, Affective and Behavioral Neuroscience. 13: 714-724. PMID 24022791 DOI: 10.3758/S13415-013-0196-0  1
2013 Choi L, Crainiceanu CM, Caffo BS. Practical recommendations for population PK studies with sampling time errors. European Journal of Clinical Pharmacology. 69: 2055-64. PMID 23975237 DOI: 10.1007/S00228-013-1576-7  1
2013 Leekha S, Li S, Thom KA, Preas MA, Caffo BS, Morgan DJ, Harris AD. Comparison of total hospital-acquired bloodstream infections to central line-associated bloodstream infections and implications for outcome measures in infection control. Infection Control and Hospital Epidemiology. 34: 984-6. PMID 23917916 DOI: 10.1086/671730  1
2013 Boca SM, Bravo HC, Caffo B, Leek JT, Parmigiani G. A decision-theory approach to interpretable set analysis for high-dimensional data. Biometrics. 69: 614-23. PMID 23909925 DOI: 10.1111/Biom.12060  1
2013 Leyva FJ, Bakshi RP, Fuchs EJ, Li L, Caffo BS, Goldsmith AJ, Ventuneac A, Carballo-Diéguez A, Du Y, Leal JP, Lee LA, Torbenson MS, Hendrix CW. Isoosmolar enemas demonstrate preferential gastrointestinal distribution, safety, and acceptability compared with hyperosmolar and hypoosmolar enemas as a potential delivery vehicle for rectal microbicides. Aids Research and Human Retroviruses. 29: 1487-95. PMID 23885722 DOI: 10.1089/AID.2013.0189  1
2013 Lindquist MA, Caffo B, Crainiceanu C. Ironing out the statistical wrinkles in "ten ironic rules". Neuroimage. 81: 499-502. PMID 23587691 DOI: 10.1016/J.Neuroimage.2013.02.056  1
2013 Barber AD, Caffo BS, Pekar JJ, Mostofsky SH. Effects of working memory demand on neural mechanisms of motor response selection and control. Journal of Cognitive Neuroscience. 25: 1235-48. PMID 23530923 DOI: 10.1162/jocn_a_00394  1
2013 Langrock R, Swihart BJ, Caffo BS, Punjabi NM, Crainiceanu CM. Combining hidden Markov models for comparing the dynamics of multiple sleep electroencephalograms. Statistics in Medicine. 32: 3342-56. PMID 23348835 DOI: 10.1002/Sim.5747  1
2013 Eloyan A, Crainiceanu CM, Caffo BS. Likelihood-based population independent component analysis. Biostatistics (Oxford, England). 14: 514-27. PMID 23314416 DOI: 10.1093/Biostatistics/Kxs055  1
2013 Ozturk A, Aygun N, Smith SA, Caffo B, Calabresi PA, Reich DS. Axial 3D gradient-echo imaging for improved multiple sclerosis lesion detection in the cervical spinal cord at 3T. Neuroradiology. 55: 431-9. PMID 23208410 DOI: 10.1007/S00234-012-1118-5  1
2013 Barber AD, Caffo BS, Pekar JJ, Mostofsky SH. Developmental changes in within- and between-network connectivity between late childhood and adulthood. Neuropsychologia. 51: 156-67. PMID 23174403 DOI: 10.1016/j.neuropsychologia.2012.11.011  1
2013 Cervenka MC, Franaszczuk PJ, Crone NE, Hong B, Caffo BS, Bhatt P, Lenz FA, Boatman-Reich D. Reliability of early cortical auditory gamma-band responses. Clinical Neurophysiology : Official Journal of the International Federation of Clinical Neurophysiology. 124: 70-82. PMID 22771035 DOI: 10.1016/J.Clinph.2012.06.003  1
2013 Lauzon CB, Crainiceanu C, Caffo BC, Landman BA. Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX. Magnetic Resonance in Medicine. 69: 891-902. PMID 22611000 DOI: 10.1002/Mrm.24324  1
2013 Crainiceanu CM, Caffo BS, Morris JS. Multilevel functional data analysis The Sage Handbook of Multilevel Modeling. 223-248. DOI: 10.4135/9781446247600.n13  1
2013 Shinohara RT, Crainiceanu CS, Caffo BS, Reich DS. Information criteria for dynamic contrast-enhanced magnetic resonance imaging Proceedings - 2013 3rd International Workshop On Pattern Recognition in Neuroimaging, Prni 2013. 37-41. DOI: 10.1109/PRNI.2013.19  1
2013 Lee S, Zipunnikov V, Shiee N, Crainiceanu C, Caffo BS, Pham DL. Clustering of high dimensional longitudinal imaging data Proceedings - 2013 3rd International Workshop On Pattern Recognition in Neuroimaging, Prni 2013. 33-36. DOI: 10.1109/PRNI.2013.18  1
2013 Caffo B, Lauzon C, Röhmel J. Correction to "Easy Multiplicity Control in Equivalence Testing Using Two One-Sided Tests" American Statistician. 67: 115-116. DOI: 10.1080/00031305.2012.760487  1
2012 Bai J, Goldsmith J, Caffo B, Glass TA, Crainiceanu CM. Movelets: A dictionary of movement. Electronic Journal of Statistics. 6: 559-578. PMID 23293708 DOI: 10.1214/12-Ejs684  1
2012 Li S, Eloyan A, Joel S, Mostofsky S, Pekar J, Bassett SS, Caffo B. Analysis of group ICA-based connectivity measures from fMRI: application to Alzheimer's disease. Plos One. 7: e49340. PMID 23226208 DOI: 10.1371/Journal.Pone.0049340  1
2012 Tighe SK, Reading SA, Rivkin P, Caffo B, Schweizer B, Pearlson G, Potash JB, Depaulo JR, Bassett SS. Total white matter hyperintensity volume in bipolar disorder patients and their healthy relatives. Bipolar Disorders. 14: 888-93. PMID 23167936 DOI: 10.1111/Bdi.12019  1
2012 Sasaki T, Miller CF, Hansford R, Yang J, Caffo BS, Zviman MM, Henrikson CA, Marine JE, Spragg D, Cheng A, Tandri H, Sinha S, Kolandaivelu A, Zimmerman SL, Bluemke DA, et al. Myocardial structural associations with local electrograms: a study of postinfarct ventricular tachycardia pathophysiology and magnetic resonance-based noninvasive mapping. Circulation. Arrhythmia and Electrophysiology. 5: 1081-90. PMID 23149263 DOI: 10.1161/Circep.112.970699  1
2012 Lauzon CB, Caffo BC, Landman BA. Towards Automatic Quantitative Quality Control for MRI. Proceedings of Spie--the International Society For Optical Engineering. 8314. PMID 23087586 DOI: 10.1117/12.910819  1
2012 James BD, Glass TA, Caffo B, Bobb JF, Davatzikos C, Yousem D, Schwartz BS. Association of social engagement with brain volumes assessed by structural MRI. Journal of Aging Research. 2012: 512714. PMID 22997582 DOI: 10.1155/2012/512714  1
2012 Eloyan A, Muschelli J, Nebel MB, Liu H, Han F, Zhao T, Barber AD, Joel S, Pekar JJ, Mostofsky SH, Caffo B. Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging. Frontiers in Systems Neuroscience. 6: 61. PMID 22969709 DOI: 10.3389/Fnsys.2012.00061  1
2012 Jedynak BM, Lang A, Liu B, Katz E, Zhang Y, Wyman BT, Raunig D, Jedynak CP, Caffo B, Prince JL. A computational neurodegenerative disease progression score: method and results with the Alzheimer's disease Neuroimaging Initiative cohort. Neuroimage. 63: 1478-86. PMID 22885136 DOI: 10.1016/J.Neuroimage.2012.07.059  1
2012 Goldsmith J, Crainiceanu CM, Caffo B, Reich D. Longitudinal Penalized Functional Regression for Cognitive Outcomes on Neuronal Tract Measurements. Journal of the Royal Statistical Society. Series C, Applied Statistics. 61: 453-469. PMID 22679339 DOI: 10.1111/J.1467-9876.2011.01031.X  1
2012 Shiee N, Bazin PL, Zackowski KM, Farrell SK, Harrison DM, Newsome SD, Ratchford JN, Caffo BS, Calabresi PA, Pham DL, Reich DS. Revisiting brain atrophy and its relationship to disability in multiple sclerosis. Plos One. 7: e37049. PMID 22615886 DOI: 10.1371/Journal.Pone.0037049  1
2012 Yang X, Lauzon CB, Crainiceanu C, Caffo B, Resnick SM, Landman BA. Biological parametric mapping accounting for random regressors with regression calibration and model II regression. Neuroimage. 62: 1761-8. PMID 22609453 DOI: 10.1016/J.Neuroimage.2012.05.020  1
2012 Thom KA, Howard T, Sembajwe S, Harris AD, Strassle P, Caffo BS, Carroll KC, Johnson JK. Comparison of swab and sponge methodologies for identification of Acinetobacter baumannii from the hospital environment. Journal of Clinical Microbiology. 50: 2140-1. PMID 22461673 DOI: 10.1128/JCM.00448-12  1
2012 Aurora RN, Crainiceanu C, Caffo B, Punjabi NM. Sleep-disordered breathing and caffeine consumption: results of a community-based study. Chest. 142: 631-8. PMID 22459776 DOI: 10.1378/Chest.11-2894  1
2012 Cao YJ, Caffo BS, Fuchs EJ, Lee LA, Du Y, Li L, Bakshi RP, Macura K, Khan WA, Wahl RL, Grohskopf LA, Hendrix CW. Quantification of the spatial distribution of rectally applied surrogates for microbicide and semen in colon with SPECT and magnetic resonance imaging. British Journal of Clinical Pharmacology. 74: 1013-22. PMID 22404308 DOI: 10.1111/j.1365-2125.2012.04267.x  1
2012 Ellington LE, Gilman RH, Tielsch JM, Steinhoff M, Figueroa D, Rodriguez S, Caffo B, Tracey B, Elhilali M, West J, Checkley W. Computerised lung sound analysis to improve the specificity of paediatric pneumonia diagnosis in resource-poor settings: protocol and methods for an observational study. Bmj Open. 2: e000506. PMID 22307098 DOI: 10.1136/Bmjopen-2011-000506  1
2012 Louissaint NA, Fuchs EJ, Bakshi RP, Nimmagadda S, Du Y, Macura KJ, King KE, Wahl R, Goldsmith AJ, Caffo B, Cao YJ, Anderson J, Hendrix CW. Distribution of cell-free and cell-associated HIV surrogates in the female genital tract after simulated vaginal intercourse. The Journal of Infectious Diseases. 205: 725-32. PMID 22279121 DOI: 10.1093/Infdis/Jir841  1
2012 Swihart BJ, Caffo BS, Crainiceanu CM, Punjabi NM. Mixed effect Poisson log-linear models for clinical and epidemiological sleep hypnogram data. Statistics in Medicine. 31: 855-70. PMID 22241689 DOI: 10.1002/Sim.4457  1
2012 Louissaint NA, Nimmagadda S, Fuchs EJ, Bakshi RP, Cao YJ, Lee LA, Goldsmith J, Caffo BS, Du Y, King KE, Menendez FA, Torbenson MS, Hendrix CW. Distribution of cell-free and cell-associated HIV surrogates in the colon after simulated receptive anal intercourse in men who have sex with men. Journal of Acquired Immune Deficiency Syndromes (1999). 59: 10-7. PMID 21937920 DOI: 10.1097/Qai.0B013E3182373B5E  1
2012 Barber AD, Srinivasan P, Joel SE, Caffo BS, Pekar JJ, Mostofsky SH. Motor "dexterity"?: Evidence that left hemisphere lateralization of motor circuit connectivity is associated with better motor performance in children. Cerebral Cortex (New York, N.Y. : 1991). 22: 51-9. PMID 21613469 DOI: 10.1093/cercor/bhr062  1
2012 Taguchi K, Srivastava S, Tang Q, Caffo BS, Iwanczyk JS, Hartsough NE, Barber WC, Cammin J. Pulse pileup statistics for energy sensitive photon counting detectors with pulse height analysis Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8313. DOI: 10.1117/12.911365  1
2012 Krauss GL, Caffo B. Reply Annals of Neurology. 71: 725. DOI: 10.1002/ana.23584  1
2011 Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C. Multilevel Functional Principal Component Analysis for High-Dimensional Data. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 20: 852-873. PMID 25960627 DOI: 10.1198/Jcgs.2011.10122  1
2011 Yang X, Lauzon CB, Crainiceanu C, Caffo B, Resnick SM, Landman BA. Accounting for Random Regressors: A Unified Approach to Multi-modality Imaging. Multimodal Brain Image Analysis : First International Workshop, Mbia 2011, Held in Conjunction With Miccai 2011, Toronto, Canada, September 18, 2011 : Proceedings / Tianming Liu ... [Et Al.], (Eds.). 7012: 1-9. PMID 25346952 DOI: 10.1007/978-3-642-24446-9_1  1
2011 Crainiceanu CM, Caffo BS, Luo S, Zipunnikov VM, Punjabi NM. Population Value Decomposition, a Framework for the Analysis of Image Populations. Journal of the American Statistical Association. 106. PMID 24415813 DOI: 10.1198/Jasa.2011.Ap10089  1
2011 Goldsmith J, Bobb J, Crainiceanu CM, Caffo B, Reich D. Penalized Functional Regression. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 20: 830-851. PMID 22368438 DOI: 10.1198/Jcgs.2010.10007  1
2011 Aurora RN, Caffo B, Crainiceanu C, Punjabi NM. Correlating subjective and objective sleepiness: revisiting the association using survival analysis. Sleep. 34: 1707-14. PMID 22131609 DOI: 10.5665/Sleep.1442  1
2011 James BD, Caffo B, Stewart WF, Yousem D, Davatzikos C, Schwartz BS. Genetic risk factors for longitudinal changes in structural MRI in former organolead workers. Journal of Aging Research. 2011: 362189. PMID 22028967 DOI: 10.4061/2011/362189  1
2011 Lauzon CB, Asman AJ, Crainiceanu C, Caffo BC, Landman BA. Assessment of bias for MRI diffusion tensor imaging using SIMEX. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 14: 107-15. PMID 21995019 DOI: 10.1007/978-3-642-23629-7_14  1
2011 Nazarian S, Hansford R, Roguin A, Goldsher D, Zviman MM, Lardo AC, Caffo BS, Frick KD, Kraut MA, Kamel IR, Calkins H, Berger RD, Bluemke DA, Halperin HR. A prospective evaluation of a protocol for magnetic resonance imaging of patients with implanted cardiac devices. Annals of Internal Medicine. 155: 415-24. PMID 21969340 DOI: 10.7326/0003-4819-155-7-201110040-00004  1
2011 Massie AB, Caffo B, Gentry SE, Hall EC, Axelrod DA, Lentine KL, Schnitzler MA, Gheorghian A, Salvalaggio PR, Segev DL. MELD Exceptions and Rates of Waiting List Outcomes. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 11: 2362-71. PMID 21920019 DOI: 10.1111/J.1600-6143.2011.03735.X  1
2011 Choi L, Caffo BS, Kohli U, Pandharipande P, Kurnik D, Ely EW, Stein CM. A Bayesian hierarchical nonlinear mixture model in the presence of artifactual outliers in a population pharmacokinetic study. Journal of Pharmacokinetics and Pharmacodynamics. 38: 613-36. PMID 21847635 DOI: 10.1007/s10928-011-9211-7  1
2011 Zipunnikov V, Caffo B, Yousem DM, Davatzikos C, Schwartz BS, Crainiceanu C. Functional principal component model for high-dimensional brain imaging. Neuroimage. 58: 772-84. PMID 21798354 DOI: 10.1016/J.Neuroimage.2011.05.085  1
2011 Krauss GL, Caffo B, Chang YT, Hendrix CW, Chuang K. Assessing bioequivalence of generic antiepilepsy drugs. Annals of Neurology. 70: 221-8. PMID 21717495 DOI: 10.1002/ana.22452  1
2011 Shinohara RT, Crainiceanu CM, Caffo BS, Gaitán MI, Reich DS. Population-wide principal component-based quantification of blood-brain-barrier dynamics in multiple sclerosis. Neuroimage. 57: 1430-46. PMID 21635955 DOI: 10.1016/J.Neuroimage.2011.05.038  1
2011 Goldsmith J, Crainiceanu CM, Caffo BS, Reich DS. Penalized functional regression analysis of white-matter tract profiles in multiple sclerosis. Neuroimage. 57: 431-9. PMID 21554962 DOI: 10.1016/J.Neuroimage.2011.04.044  1
2011 Joel SE, Caffo BS, van Zijl PC, Pekar JJ. On the relationship between seed-based and ICA-based measures of functional connectivity. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 66: 644-57. PMID 21394769 DOI: 10.1002/mrm.22818  1
2011 Li X, Caffo BS. Comparison of proportions for composite endpoints with missing components. Journal of Biopharmaceutical Statistics. 21: 271-81. PMID 21391001 DOI: 10.1080/10543406.2011.550109  1
2011 Harrison DM, Caffo BS, Shiee N, Farrell JA, Bazin PL, Farrell SK, Ratchford JN, Calabresi PA, Reich DS. Longitudinal changes in diffusion tensor-based quantitative MRI in multiple sclerosis. Neurology. 76: 179-86. PMID 21220722 DOI: 10.1212/Wnl.0B013E318206Ca61  1
2011 Mondul AM, Caffo B, Platz EA. Minimal detection bias in the inverse association between statin drug use and advanced prostate cancer risk: a simulation study. Cancer Epidemiology. 35: e6-11. PMID 21167804 DOI: 10.1016/J.Canep.2010.11.005  1
2011 Nazarian S, Wagner KR, Caffo BS, Tomaselli GF. Clinical predictors of conduction disease progression in type I myotonic muscular dystrophy. Pacing and Clinical Electrophysiology : Pace. 34: 171-6. PMID 20946286 DOI: 10.1111/j.1540-8159.2010.02905.x  1
2011 Goldsmith J, Caffo B, Crainiceanu C, Reich D, Du Y, Hendrix C. Nonlinear tube-fitting for the analysis of anatomical and functional structures Annals of Applied Statistics. 5: 337-363. DOI: 10.1214/10-AOAS384  1
2011 Crainiceanu CM, Caffo BS, Luo S, Zipunnikov VM, Punjabi NM. Rejoinder Journal of the American Statistical Association. 106: 803-806. DOI: 10.1198/jasa.2011.ap11306  1
2010 Laffan A, Caffo B, Swihart BJ, Punjabi NM. Utility of sleep stage transitions in assessing sleep continuity. Sleep. 33: 1681-6. PMID 21120130 DOI: 10.1093/Sleep/33.12.1681  1
2010 Caffo B, Diener-West M, Punjabi NM, Samet J. A novel approach to prediction of mild obstructive sleep disordered breathing in a population-based sample: the Sleep Heart Health Study. Sleep. 33: 1641-8. PMID 21120126 DOI: 10.1093/Sleep/33.12.1641  1
2010 Swihart BJ, Caffo B, James BD, Strand M, Schwartz BS, Punjabi NM. Lasagna plots: a saucy alternative to spaghetti plots. Epidemiology (Cambridge, Mass.). 21: 621-5. PMID 20699681 DOI: 10.1097/Ede.0B013E3181E5B06A  1
2010 Nazarian S, Bluemke DA, Wagner KR, Zviman MM, Turkbey E, Caffo BS, Shehata M, Edwards D, Butcher B, Calkins H, Berger RD, Halperin HR, Tomaselli GF. QRS prolongation in myotonic muscular dystrophy and diffuse fibrosis on cardiac magnetic resonance. Magnetic Resonance in Medicine. 64: 107-14. PMID 20572151 DOI: 10.1002/Mrm.22417  1
2010 Boatman-Reich D, Franaszczuk PJ, Korzeniewska A, Caffo B, Ritzl EK, Colwell S, Crone NE. Quantifying auditory event-related responses in multichannel human intracranial recordings. Frontiers in Computational Neuroscience. 4: 4. PMID 20428513 DOI: 10.3389/fncom.2010.00004  1
2010 Schwartz BS, Caffo B, Stewart WF, Hedlin H, James BD, Yousem D, Davatzikos C. Evaluation of cumulative lead dose and longitudinal changes in structural magnetic resonance imaging in former organolead workers. Journal of Occupational and Environmental Medicine / American College of Occupational and Environmental Medicine. 52: 407-14. PMID 20357679 DOI: 10.1097/Jom.0B013E3181D5E386  1
2010 Caffo BS, Crainiceanu CM, Verduzco G, Joel S, Mostofsky SH, Bassett SS, Pekar JJ. Two-stage decompositions for the analysis of functional connectivity for fMRI with application to Alzheimer's disease risk. Neuroimage. 51: 1140-9. PMID 20227508 DOI: 10.1016/J.Neuroimage.2010.02.081  1
2010 Segev DL, Muzaale AD, Caffo BS, Mehta SH, Singer AL, Taranto SE, McBride MA, Montgomery RA. Perioperative mortality and long-term survival following live kidney donation. Jama. 303: 959-66. PMID 20215610 DOI: 10.1001/jama.2010.237  1
2010 Wu H, Caffo B, Jaffee HA, Irizarry RA, Feinberg AP. Redefining CpG islands using hidden Markov models. Biostatistics (Oxford, England). 11: 499-514. PMID 20212320 DOI: 10.1093/Biostatistics/Kxq005  1
2010 Ozturk A, Smith SA, Gordon-Lipkin EM, Harrison DM, Shiee N, Pham DL, Caffo BS, Calabresi PA, Reich DS. MRI of the corpus callosum in multiple sclerosis: association with disability. Multiple Sclerosis (Houndmills, Basingstoke, England). 16: 166-77. PMID 20142309 DOI: 10.1177/1352458509353649  1
2009 Caffo BS, Liu D, Scharpf RB, Parmigiani G. Likelihood estimation of conjugacy relationships in linear models with applications to high-throughput genomics. The International Journal of Biostatistics. 5: Article 18. PMID 20224629 DOI: 10.2202/1557-4679.1129  1
2009 Di CZ, Crainiceanu CM, Caffo BS, Punjabi NM. MULTILEVEL FUNCTIONAL PRINCIPAL COMPONENT ANALYSIS. The Annals of Applied Statistics. 3: 458-488. PMID 20221415 DOI: 10.1214/08-Aoas206Supp  1
2009 Crainiceanu CM, Caffo BS, Di CZ, Punjabi NM. Nonparametric Signal Extraction and Measurement Error in the Analysis of Electroencephalographic Activity During Sleep. Journal of the American Statistical Association. 104: 541-555. PMID 20057925 DOI: 10.1198/Jasa.2009.0020  1
2009 Lauzon C, Caffo B. Easy Multiplicity Control in Equivalence Testing Using Two One-sided Tests. The American Statistician. 63: 147-154. PMID 20046823 DOI: 10.1198/tast.2009.0029  1
2009 Punjabi NM, Caffo BS, Goodwin JL, Gottlieb DJ, Newman AB, O'Connor GT, Rapoport DM, Redline S, Resnick HE, Robbins JA, Shahar E, Unruh ML, Samet JM. Sleep-disordered breathing and mortality: a prospective cohort study. Plos Medicine. 6: e1000132. PMID 19688045 DOI: 10.1371/Journal.Pmed.1000132  1
2009 Reich DS, Smith SA, Gordon-Lipkin EM, Ozturk A, Caffo BS, Balcer LJ, Calabresi PA. Damage to the optic radiation in multiple sclerosis is associated with retinal injury and visual disability. Archives of Neurology. 66: 998-1006. PMID 19667222 DOI: 10.1001/Archneurol.2009.107  1
2009 Yousem DM, Yassa MA, Cristinzio C, Kusevic I, Mohamed M, Caffo BS, Bassett SS. Intelligence and medial temporal lobe function in older adults: a functional MR imaging-based investigation. Ajnr. American Journal of Neuroradiology. 30: 1477-81. PMID 19474122 DOI: 10.3174/ajnr.A1634  1
2009 Mostofsky SH, Powell SK, Simmonds DJ, Goldberg MC, Caffo B, Pekar JJ. Decreased connectivity and cerebellar activity in autism during motor task performance. Brain : a Journal of Neurology. 132: 2413-25. PMID 19389870 DOI: 10.1093/Brain/Awp088  1
2009 O'Connor GT, Caffo B, Newman AB, Quan SF, Rapoport DM, Redline S, Resnick HE, Samet J, Shahar E. Prospective study of sleep-disordered breathing and hypertension: the Sleep Heart Health Study. American Journal of Respiratory and Critical Care Medicine. 179: 1159-64. PMID 19264976 DOI: 10.1164/Rccm.200712-1809Oc  1
2009 Chen S, Wang C, Eberly LE, Caffo BS, Schwartz BS. Adaptive control of the false discovery rate in voxel-based morphometry. Human Brain Mapping. 30: 2304-11. PMID 19034901 DOI: 10.1002/hbm.20669  1
2009 Su SC, Caffo B, Garrett-Mayer E, Bassett SS. Modified test statistics by inter-voxel variance shrinkage with an application to f MRI. Biostatistics (Oxford, England). 10: 219-27. PMID 18723853 DOI: 10.1093/Biostatistics/Kxn028  1
2009 O'Connor GT, Caffo BS. From the authors American Journal of Respiratory and Critical Care Medicine. 180: 582.  1
2008 Caffo BS, Crainiceanu CM, Deng L, Hendrix CW. A Case Study in Pharmacologic Colon Imaging Using Principal Curves in Single Photon Emission Computed Tomography. Journal of the American Statistical Association. 103: 1470-1480. PMID 20016767 DOI: 10.1198/016214508000000832  1
2008 He X, Caffo BS, Frey EC. Toward realistic and practical ideal observer (IO) estimation for the optimization of medical imaging systems. Ieee Transactions On Medical Imaging. 27: 1535-43. PMID 18815105 DOI: 10.1109/Tmi.2008.924641  1
2008 Swihart BJ, Caffo B, Bandeen-Roche K, Punjabi NM. Characterizing sleep structure using the hypnogram. Journal of Clinical Sleep Medicine : Jcsm : Official Publication of the American Academy of Sleep Medicine. 4: 349-55. PMID 18763427 DOI: 10.5664/Jcsm.27236  1
2008 Suskauer SJ, Simmonds DJ, Caffo BS, Denckla MB, Pekar JJ, Mostofsky SH. fMRI of intrasubject variability in ADHD: anomalous premotor activity with prefrontal compensation. Journal of the American Academy of Child and Adolescent Psychiatry. 47: 1141-50. PMID 18724253 DOI: 10.1097/CHI.0b013e3181825b1f  1
2008 Stamatakis K, Sanders MH, Caffo B, Resnick HE, Gottlieb DJ, Mehra R, Punjabi NM. Fasting glycemia in sleep disordered breathing: lowering the threshold on oxyhemoglobin desaturation. Sleep. 31: 1018-24. PMID 18652097  1
2008 Redgrave GW, Bakker A, Bello NT, Caffo BS, Coughlin JW, Guarda AS, McEntee JE, Pekar JJ, Reinblatt SP, Verduzco G, Moran TH. Differential brain activation in anorexia nervosa to Fat and Thin words during a Stroop task. Neuroreport. 19: 1181-5. PMID 18628661 DOI: 10.1097/Wnr.0B013E32830A70F2  1
2008 Choi L, Caffo B, Rohde C. A survey of the likelihood approach to bioequivalence trials. Statistics in Medicine. 27: 4874-94. PMID 18618422 DOI: 10.1002/sim.3334  1
2008 Guilarte TR, Hammoud DA, McGlothan JL, Caffo BS, Foss CA, Kozikowski AP, Pomper MG. Dysregulation of glutamate carboxypeptidase II in psychiatric disease Schizophrenia Research. 99: 324-332. PMID 18191545 DOI: 10.1016/J.Schres.2007.11.013  1
2008 Cao YJ, Caffo B, Choi L, Radebaugh CL, Fuchs EJ, Hendrix CW. Noninvasive quantitation of drug concentration in prostate and seminal vesicles: improvement and validation with desipramine and aspirin. Journal of Clinical Pharmacology. 48: 176-83. PMID 18094213 DOI: 10.1177/0091270007310547  1
2008 Caffo B, Chen S, Stewart W, Bolla K, Yousem D, Davatzikos C, Schwartz BS. Are brain volumes based on magnetic resonance imaging mediators of the associations of cumulative lead dose with cognitive function? American Journal of Epidemiology. 167: 429-37. PMID 18079133 DOI: 10.1093/Aje/Kwm326  1
2008 Choi L, Caffo B, Rohde C, Ndovi TT, Hendrix CW. A mechanistic latent variable model for estimating drug concentrations in the male genital tract: a case study in drug kinetics. Statistics in Medicine. 27: 2697-714. PMID 17948921 DOI: 10.1002/Sim.3097  1
2008 Scharfstein DO, Ryea JL, Caffo B. Accounting for within-patient correlation in assessing relative sensitivity of an adjunctive diagnostic test: application to lung cancer. Statistics in Medicine. 27: 2110-26. PMID 17943997 DOI: 10.1002/Sim.3085  1
2008 Bowman FD, Caffo B, Bassett SS, Kilts C. A Bayesian hierarchical framework for spatial modeling of fMRI data Neuroimage. 39: 146-156. PMID 17936016 DOI: 10.1016/J.Neuroimage.2007.08.012  1
2008 Zhang L, Samet J, Caffo B, Bankman I, Punjabi NM. Power spectral analysis of EEG activity during sleep in cigarette smokers. Chest. 133: 427-32. PMID 17925420 DOI: 10.1378/Chest.07-1190  1
2008 Cao YJ, Ndovi TT, Parsons TL, Guidos AM, Caffo B, Hendrix CW. Effect of semen sampling frequency on seminal antiretroviral drug concentration. Clinical Pharmacology and Therapeutics. 83: 848-56. PMID 17914441 DOI: 10.1038/Sj.Clpt.6100356  1
2007 Caffo B, An MW, Rohde C. Flexible Random Intercept Models for Binary Outcomes Using Mixtures of Normals. Computational Statistics & Data Analysis. 51: 5220-5235. PMID 18628822 DOI: 10.1016/J.Csda.2006.09.031  1
2007 Schwartz BS, Chen S, Caffo B, Stewart WF, Bolla KI, Yousem D, Davatzikos C. Relations of brain volumes with cognitive function in males 45 years and older with past lead exposure. Neuroimage. 37: 633-41. PMID 17600728 DOI: 10.1016/J.Neuroimage.2007.05.035  1
2007 Li X, Caffo B, Scharfstein D. On the potential for illogic with logically defined outcomes. Biostatistics (Oxford, England). 8: 800-4. PMID 17384078 DOI: 10.1093/Biostatistics/Kxm006  1
2007 Ndovi TT, Parsons T, Choi L, Caffo B, Rohde C, Hendrix CW. A new method to estimate quantitatively seminal vesicle and prostate gland contributions to ejaculate. British Journal of Clinical Pharmacology. 63: 404-20. PMID 17076697 DOI: 10.1111/J.1365-2125.2006.02791.X  1
2007 He X, Caffo BS, Frey EC. Markov chain Monte Carlo (MCMC) based ideal observer estimation using a parameterized phantom and a pre-calculated dataset Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6515. DOI: 10.1117/12.710173  1
2007 Choi L, Caffo B, Rohde C. Optimal sampling times in bioequivalence studies using a simulated annealing algorithm Statistics and Computing. 17: 337-347. DOI: 10.1007/S11222-007-9023-1  1
2006 Ndovi TT, Choi L, Caffo B, Parsons T, Baker S, Zhao M, Rohde C, Hendrix CW. Quantitative assessment of seminal vesicle and prostate drug concentrations by use of a noninvasive method. Clinical Pharmacology and Therapeutics. 80: 146-58. PMID 16890576 DOI: 10.1016/J.Clpt.2006.04.013  1
2006 Zhang L, Samet J, Caffo B, Punjabi NM. Cigarette smoking and nocturnal sleep architecture. American Journal of Epidemiology. 164: 529-37. PMID 16829553 DOI: 10.1093/Aje/Kwj231  1
2006 Bassett SS, Yousem DM, Cristinzio C, Kusevic I, Yassa MA, Caffo BS, Zeger SL. Familial risk for Alzheimer's disease alters fMRI activation patterns. Brain : a Journal of Neurology. 129: 1229-39. PMID 16627465 DOI: 10.1093/brain/awl089  1
2006 Jones GL, Haran M, Caffo BS, Neath R. Fixed-width output analysis for Markov chain Monte Carlo Journal of the American Statistical Association. 101: 1537-1547. DOI: 10.1198/016214506000000492  1
2006 Caffo B, Griswold M. A user-friendly introduction to link-probit-normal models American Statistician. 60: 139-145. DOI: 10.1198/000313006X110203  1
2006 Caffo B. Exact hypothesis tests for log-linear models with exactLoglinTest Journal of Statistical Software. 17: 1-17.  1
2005 Caffo BS, Jank W, Jones GL. Ascent-based Monte Carlo expectation-maximization Journal of the Royal Statistical Society. Series B: Statistical Methodology. 67: 235-251. DOI: 10.1111/J.1467-9868.2005.00499.X  1
2004 Agresti A, Caffo B, Ohman-Strickland P. Examples in which misspecification of a random effects distribution reduces efficiency, and possible remedies Computational Statistics and Data Analysis. 47: 639-653. DOI: 10.1016/J.Csda.2003.12.009  1
2003 Caffo BS, Booth JG. Monte Carlo conditional inference for log-linear and logistic models: A survey of current methodology Statistical Methods in Medical Research. 12: 109-123. PMID 12665206 DOI: 10.1191/0962280203sm313ra  1
2003 Broman KW, Caffo BS. Simulation-based P values: Response to north et al. [1] American Journal of Human Genetics. 72: 496. PMID 12596792 DOI: 10.1086/346175  1
2002 Caffo BS, Booth JG, Davison AC. Empirical supremum rejection sampling Biometrika. 89: 745-754. DOI: 10.1093/biomet/89.4.745  1
2002 Booth JG, Caffo BS. Unequal sampling for Monte Carlo EM algorithms Computational Statistics and Data Analysis. 39: 261-270. DOI: 10.1016/S0167-9473(01)00062-7  1
2002 Agresti A, Caffo B. Measures of relative model fit Computational Statistics and Data Analysis. 39: 127-136. DOI: 10.1016/S0167-9473(01)00054-8  1
2001 Caffo BS, Booth JG. A markov chain Monte Carlo algorithm for approximating exact conditional probabilities Journal of Computational and Graphical Statistics. 10: 730-745.  1
2000 Agresti A, Booth JG, Hobert JP, Caffo B. Random-effects modeling of categorical response data Sociological Methodology. 30: 27-80. DOI: 10.1111/0081-1750.T01-1-00075  1
2000 Agresti A, Caffo B. Simple and effective confidence intervals for proportions and differences of proportions result from adding two successes and two failures American Statistician. 54: 280-288.  1
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