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Laura S. Kubatko - Publications

Affiliations: 
University of New Mexico, Albuquerque, NM, United States 
Area:
Statistics
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

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Year Citation  Score
2016 Tian Y, Kubatko LS. Expected pairwise congruence among gene trees under the coalescent model. Molecular Phylogenetics and Evolution. 106: 144-150. PMID 27693467 DOI: 10.1016/j.ympev.2016.09.023  0.44
2016 Tian Y, Kubatko LS. Distribution of coalescent histories under the coalescent model with gene flow. Molecular Phylogenetics and Evolution. PMID 27614251 DOI: 10.1016/j.ympev.2016.08.024  0.44
2015 Blischak PD, Kubatko LS, Wolfe AD. Accounting for genotype uncertainty in the estimation of allele frequencies in autopolyploids. Molecular Ecology Resources. PMID 26607217 DOI: 10.1111/1755-0998.12493  0.44
2015 Kubatko L, Shah P, Herbei R, Gilchrist MA. A codon model of nucleotide substitution with selection on synonymous codon usage. Molecular Phylogenetics and Evolution. PMID 26358614 DOI: 10.1016/j.ympev.2015.08.026  0.44
2015 Spade DA, Herbei R, Kubatko LS. Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths. Mathematical Biosciences. 268: 9-21. PMID 26256054 DOI: 10.1016/j.mbs.2015.07.002  0.44
2015 Chifman J, Kubatko L. Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites. Journal of Theoretical Biology. 374: 35-47. PMID 25791286 DOI: 10.1016/j.jtbi.2015.03.006  0.44
2014 Chifman J, Kubatko L. Quartet inference from SNP data under the coalescent model. Bioinformatics (Oxford, England). 30: 3317-24. PMID 25104814 DOI: 10.1093/bioinformatics/btu530  0.44
2014 Sovic MG, Kubatko LS, Fuerst PA. The effects of locus number, genetic divergence, and genotyping error on the utility of dominant markers for hybrid identification. Ecology and Evolution. 4: 462-73. PMID 24634730 DOI: 10.1002/ece3.833  0.44
2014 Tian Y, Kubatko LS. Gene tree rooting methods give distributions that mimic the coalescent process. Molecular Phylogenetics and Evolution. 70: 63-9. PMID 24055603 DOI: 10.1016/j.ympev.2013.09.004  0.44
2014 Spade DA, Herbei R, Kubatko LS. A note on the relaxation time of two Markov chains on rooted phylogenetic tree spaces Statistics and Probability Letters. 84: 247-252. DOI: 10.1016/j.spl.2013.09.017  0.44
2013 Thompson KL, Kubatko LS. Using ancestral information to detect and localize quantitative trait loci in genome-wide association studies. Bmc Bioinformatics. 14: 200. PMID 23786262 DOI: 10.1186/1471-2105-14-200  0.44
2013 Hovmöller R, Knowles LL, Kubatko LS. Effects of missing data on species tree estimation under the coalescent. Molecular Phylogenetics and Evolution. 69: 1057-62. PMID 23769751 DOI: 10.1016/j.ympev.2013.06.004  0.44
2013 Kubatko LS, Fan HH. Letter to the editor on the article entitled "Estimating species trees using Approximate Bayesian Computation" (Fan and Kubatko, Mol. Phylogenetics Evol. 59, 354-363). Molecular Phylogenetics and Evolution. 66: 438-9. PMID 23063884 DOI: 10.1016/j.ympev.2012.10.003  0.44
2012 Boykin LM, Armstrong KF, Kubatko L, De Barro P. Species delimitation and global biosecurity. Evolutionary Bioinformatics Online. 8: 1-37. PMID 22267902 DOI: 10.4137/EBO.S8532  0.44
2012 Boykin LM, Armstrong K, Kubatko L, De Barro P. DNA barcoding invasive insects: Database roadblocks Invertebrate Systematics. 26: 506-514. DOI: 10.1071/IS12025  0.44
2011 Gerard D, Gibbs HL, Kubatko L. Estimating hybridization in the presence of coalescence using phylogenetic intraspecific sampling. Bmc Evolutionary Biology. 11: 291. PMID 21978073 DOI: 10.1186/1471-2148-11-291  0.44
2011 Kubatko LS, Pearl DK. Evolution. Seeing the trees in your terrace. Science (New York, N.Y.). 333: 411-2. PMID 21778387 DOI: 10.1126/science.1209690  0.44
2011 Roos C, Zinner D, Kubatko LS, Schwarz C, Yang M, Meyer D, Nash SD, Xing J, Batzer MA, Brameier M, Leendertz FH, Ziegler T, Perwitasari-Farajallah D, Nadler T, Walter L, et al. Nuclear versus mitochondrial DNA: evidence for hybridization in colobine monkeys. Bmc Evolutionary Biology. 11: 77. PMID 21435245 DOI: 10.1186/1471-2148-11-77  0.44
2011 Fan HH, Kubatko LS. Estimating species trees using approximate Bayesian computation. Molecular Phylogenetics and Evolution. 59: 354-63. PMID 21397706 DOI: 10.1016/j.ympev.2011.02.019  0.44
2011 Kubatko LS, Gibbs HL, Bloomquist EW. Inferring species-level phylogenies and taxonomic distinctiveness using multilocus data in Sistrurus rattlesnakes. Systematic Biology. 60: 393-409. PMID 21389297 DOI: 10.1093/sysbio/syr011  0.44
2010 Stone AC, Battistuzzi FU, Kubatko LS, Perry GH, Trudeau E, Lin H, Kumar S. More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 3277-88. PMID 20855302 DOI: 10.1098/rstb.2010.0096  0.44
2010 Huang H, He Q, Kubatko LS, Knowles LL. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods. Systematic Biology. 59: 573-83. PMID 20833951 DOI: 10.1093/sysbio/syq047  0.44
2010 Boykin LM, Kubatko LS, Lowrey TK. Comparison of methods for rooting phylogenetic trees: a case study using Orcuttieae (Poaceae: Chloridoideae). Molecular Phylogenetics and Evolution. 54: 687-700. PMID 19931622 DOI: 10.1016/j.ympev.2009.11.016  0.44
2009 Kubatko LS. Identifying hybridization events in the presence of coalescence via model selection Systematic Biology. 58: 478-488. PMID 20525602 DOI: 10.1093/sysbio/syp055  0.44
2009 Melman SD, Steinauer ML, Cunningham C, Kubatko LS, Mwangi IN, Wynn NB, Mutuku MW, Karanja DM, Colley DG, Black CL, Secor WE, Mkoji GM, Loker ES. Reduced susceptibility to praziquantel among naturally occurring Kenyan isolates of Schistosoma mansoni. Plos Neglected Tropical Diseases. 3: e504. PMID 19688043 DOI: 10.1371/journal.pntd.0000504  0.44
2009 Liu L, Yu L, Kubatko L, Pearl DK, Edwards SV. Coalescent methods for estimating phylogenetic trees Molecular Phylogenetics and Evolution. 53: 320-328. PMID 19501178 DOI: 10.1016/j.ympev.2009.05.033  0.44
2009 Kubatko LS, Carstens BC, Knowles LL. STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics (Oxford, England). 25: 971-3. PMID 19211573 DOI: 10.1093/bioinformatics/btp079  0.44
2009 Meng C, Kubatko LS. Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model Theoretical Population Biology. 75: 35-45. PMID 19038278 DOI: 10.1016/j.tpb.2008.10.004  0.44
2009 Brock GN, Beavis WD, Kubatko LS. Fuzzy logic and related methods as a screening tool for detecting gene regulatory networks Information Fusion. 10: 250-259. DOI: 10.1016/j.inffus.2008.11.008  0.44
2009 Brock GN, Pihur V, Kubatko L. Detecting gene regulatory networks from microarray data using fuzzy logic Studies in Fuzziness and Soft Computing. 242: 141-163. DOI: 10.1007/978-3-540-89968-6_8  0.44
2008 Shoff ME, Joslin CE, Tu EY, Kubatko L, Fuerst PA. Efficacy of contact lens systems against recent clinical and tap water Acanthamoeba isolates. Cornea. 27: 713-9. PMID 18580265 DOI: 10.1097/QAI.0b013e31815e7251  0.44
2008 Kubatko LS. Inference of phylogenetic trees Lecture Notes in Mathematics. 1922: 1-38. DOI: 10.1007/978-3-540-74331-6_1  0.44
2007 Kubatko LS, Degnan JH. Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology. 56: 17-24. PMID 17366134 DOI: 10.1080/10635150601146041  0.44
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