Michael Newton - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Statistics

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zheng Z, Mergaert AM, Fahmy LM, Bawadekar M, Holmes CL, Ong IM, Bridges AJ, Newton MA, Shelef MA. Disordered Antigens and Epitope Overlap Between Anti-Citrullinated Protein Antibodies and Rheumatoid Factor in Rheumatoid Arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 31397047 DOI: 10.1002/art.41074  0.32
2019 Pasch CA, Favreau PF, Yueh AE, Babiarz CP, Gillette A, Sharick JT, Karim MR, Nickel KP, DeZeeuw AK, Sprackling CM, Emmerich PB, DeStefanis RA, Pitera RT, Payne SN, Korkos DP, ... ... Newton MA, et al. Patient-derived cancer organoid cultures to predict sensitivity to chemotherapy and radiation. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31175091 DOI: 10.1158/1078-0432.CCR-18-3590  0.32
2019 Zuleger CL, Newton MA, Ma X, Ong IM, Pei Q, Albertini MR. Enrichment of melanoma-associated T cells in 6-thioguanine-resistant T cells from metastatic melanoma patients. Melanoma Research. PMID 31135600 DOI: 10.1097/CMR.0000000000000625  0.36
2018 Pleiman JK, Irving AA, Wang Z, Toraason E, Clipson L, Dove WF, Deming DA, Newton MA. The conserved protective cyclic AMP-phosphodiesterase function PDE4B is expressed in the adenoma and adjacent normal colonic epithelium of mammals and silenced in colorectal cancer. Plos Genetics. 14: e1007611. PMID 30188895 DOI: 10.1371/journal.pgen.1007611  0.4
2017 Zuleger CL, Kang C, Ranheim EA, Kurzman ID, Macklin MD, Newton MA, Wolchok JD, Vail DM, Eriksson E, Albertini MR. Pilot study of safety and feasibility of DNA microseeding for treatment of spontaneous canine melanoma. Veterinary Medicine and Science. 3: 134-145. PMID 29067210 DOI: 10.1002/vms3.65  0.36
2017 Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. SCnorm: robust normalization of single-cell RNA-seq data. Nature Methods. PMID 28418000 DOI: 10.1038/nmeth.4263  0.68
2016 Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 17: 222. PMID 27782827 DOI: 10.1186/s13059-016-1077-y  0.68
2016 Sievers CK, Zou LS, Pickhardt PJ, Matkowskyj KA, Albrecht DM, Clipson L, Bacher JW, Pooler BD, Moawad FJ, Cash BD, Reichelderfer M, Vo TN, Newton MA, Larget BR, Halberg RB. Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates. Gut. PMID 27609830 DOI: 10.1136/gutjnl-2016-312232  0.68
2016 Albertini MR, Ranheim EA, Zuleger CL, Sondel PM, Hank JA, Bridges A, Newton MA, McFarland T, Collins J, Clements E, Henry MB, Neuman HB, Weber S, Whalen G, Galili U. Phase I study to evaluate toxicity and feasibility of intratumoral injection of α-gal glycolipids in patients with advanced melanoma. Cancer Immunology, Immunotherapy : Cii. PMID 27207605 DOI: 10.1007/s00262-016-1846-1  0.36
2016 Hose J, Yong CM, Sardi M, Wang Z, Newton MA, Gasch AP. Correction: Dosage compensation can buffer copy-number variation in wild yeast. Elife. 5. PMID 27006204 DOI: 10.7554/eLife.15743  0.4
2016 Gasch AP, Hose J, Newton MA, Sardi M, Yong M, Wang Z. Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution. Elife. 5. PMID 26949252 DOI: 10.7554/eLife.14409  0.4
2015 Bodelon C, Vinokourova S, Sampson JN, den Boon JA, Walker JL, Horswill MA, Korthauer K, Schiffman M, Sherman ME, Zuna RE, Mitchell J, Zhang X, Boland JF, Chaturvedi AK, Dunn T, ... Newton MA, et al. Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer. Carcinogenesis. PMID 26660085 DOI: 10.1093/carcin/bgv171  0.68
2015 Gupta A, Place M, Goldstein S, Sarkar D, Zhou S, Potamousis K, Kim J, Flanagan C, Li Y, Newton MA, Callander NS, Hematti P, Bresnick EH, Ma J, Asimakopoulos F, et al. Single-molecule analysis reveals widespread structural variation in multiple myeloma. Proceedings of the National Academy of Sciences of the United States of America. 112: 7689-94. PMID 26056298 DOI: 10.1073/pnas.1418577112  0.68
2015 den Boon JA, Pyeon D, Wang SS, Horswill M, Schiffman M, Sherman M, Zuna RE, Wang Z, Hewitt SM, Pearson R, Schott M, Chung L, He Q, Lambert P, Walker J, ... Newton MA, et al. Molecular transitions from papillomavirus infection to cervical precancer and cancer: Role of stromal estrogen receptor signaling. Proceedings of the National Academy of Sciences of the United States of America. 112: E3255-64. PMID 26056290 DOI: 10.1073/pnas.1509322112  0.68
2015 Hose J, Yong CM, Sardi M, Wang Z, Newton MA, Gasch AP. Dosage compensation can buffer copy-number variation in wild yeast. Elife. 4. PMID 25955966 DOI: 10.7554/eLife.05462  0.68
2015 Newton MA, Wang Z. Multiset Statistics for Gene Set Analysis. Annual Review of Statistics and Its Application. 2: 95-111. PMID 25914887 DOI: 10.1146/annurev-statistics-010814-020335  0.68
2014 Hao L, Lindenbach B, Wang X, Dye B, Kushner D, He Q, Newton M, Ahlquist P. Genome-wide analysis of host factors in nodavirus RNA replication. Plos One. 9: e95799. PMID 24752411 DOI: 10.1371/journal.pone.0095799  0.68
2014 Dove WF, Shedlovsky A, Clipson L, Amos-Landgraf JM, Halberg RB, Krentz KJ, Boehm FJ, Newton MA, Adams DJ, Keane TM. A strategy to identify dominant point mutant modifiers of a quantitative trait. G3 (Bethesda, Md.). 4: 1113-21. PMID 24747760 DOI: 10.1534/g3.114.010595  0.68
2014 Paul Olson TJ, Hadac JN, Sievers CK, Leystra AA, Deming DA, Zahm CD, Albrecht DM, Nomura A, Nettekoven LA, Plesh LK, Clipson L, Sullivan R, Newton MA, Schelman WR, Halberg RB. Dynamic tumor growth patterns in a novel murine model of colorectal cancer. Cancer Prevention Research (Philadelphia, Pa.). 7: 105-13. PMID 24196829 DOI: 10.1158/1940-6207.CAPR-13-0163  0.68
2014 Pei Q, Zuleger CL, Macklin MD, Albertini MR, Newton MA. A conditional predictive p-value to compare a multinomial with an overdispersed multinomial in the analysis of T-cell populations. Biostatistics (Oxford, England). 15: 129-39. PMID 24096387 DOI: 10.1093/biostatistics/kxt039  0.68
2013 Hao L, He Q, Wang Z, Craven M, Newton MA, Ahlquist P. Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negative than false-positive factors. Plos Computational Biology. 9: e1003235. PMID 24068911 DOI: 10.1371/journal.pcbi.1003235  0.68
2013 Ray M, Goldstein S, Zhou S, Potamousis K, Sarkar D, Newton MA, Esterberg E, Kendziorski C, Bogler O, Schwartz DC. Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis. Bmc Genomics. 14: 505. PMID 23885787 DOI: 10.1186/1471-2164-14-505  0.68
2013 Thliveris AT, Schwefel B, Clipson L, Plesh L, Zahm CD, Leystra AA, Washington MK, Sullivan R, Deming DA, Newton MA, Halberg RB. Transformation of epithelial cells through recruitment leads to polyclonal intestinal tumors. Proceedings of the National Academy of Sciences of the United States of America. 110: 11523-8. PMID 23798428 DOI: 10.1073/pnas.1303064110  0.68
2012 Thliveris AT, Clipson L, Sommer LL, Schoenike BA, Hasenstein JR, Schlamp CL, Alexander CM, Newton MA, Dove WF, Amos-Landgraf JM. Regulated Expression of Chromobox Homolog 5 Revealed in Tumors of Apc(Min) (/+) ROSA11 Gene Trap Mice. G3 (Bethesda, Md.). 2: 569-78. PMID 22670227 DOI: 10.1534/g3.112.002436  0.68
2012 Sarkar D, Goldstein S, Schwartz DC, Newton MA. Statistical significance of optical map alignments. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 478-92. PMID 22506568 DOI: 10.1089/cmb.2011.0221  0.68
2012 Newton MA, He Q, Kendziorski C. A model-based analysis to infer the functional content of a gene list. Statistical Applications in Genetics and Molecular Biology. 11. PMID 22499692 DOI: 10.2202/1544-6115.1716  0.68
2012 Amos-Landgraf JM, Clipson L, Newton MA, Dove WF. The many ways to open the gate to colon cancer. Cell Cycle (Georgetown, Tex.). 11: 1261-2. PMID 22421162 DOI: 10.4161/cc.19888  0.68
2012 Amos-Landgraf JM, Irving AA, Hartman C, Hunter A, Laube B, Chen X, Clipson L, Newton MA, Dove WF. Monoallelic silencing and haploinsufficiency in early murine intestinal neoplasms. Proceedings of the National Academy of Sciences of the United States of America. 109: 2060-5. PMID 22308460 DOI: 10.1073/pnas.1120753109  0.68
2011 Gancarz BL, Hao L, He Q, Newton MA, Ahlquist P. Systematic identification of novel, essential host genes affecting bromovirus RNA replication. Plos One. 6: e23988. PMID 21915247 DOI: 10.1371/journal.pone.0023988  0.68
2011 Thliveris AT, Clipson L, White A, Waggoner J, Plesh L, Skinner BL, Zahm CD, Sullivan R, Dove WF, Newton MA, Halberg RB. Clonal structure of carcinogen-induced intestinal tumors in mice. Cancer Prevention Research (Philadelphia, Pa.). 4: 916-23. PMID 21636550 DOI: 10.1158/1940-6207.CAPR-11-0022  0.68
2011 Taapken SM, Nisler BS, Newton MA, Sampsell-Barron TL, Leonhard KA, McIntire EM, Montgomery KD. Karotypic abnormalities in human induced pluripotent stem cells and embryonic stem cells. Nature Biotechnology. 29: 313-4. PMID 21478842 DOI: 10.1038/nbt.1835  0.68
2011 Zuleger CL, Macklin MD, Bostwick BL, Pei Q, Newton MA, Albertini MR. In vivo 6-thioguanine-resistant T cells from melanoma patients have public TCR and share TCR beta amino acid sequences with melanoma-reactive T cells. Journal of Immunological Methods. 365: 76-86. PMID 21182840 DOI: 10.1016/j.jim.2010.12.007  0.68
2010 Newton MA, Chung LM. GAMMA-BASED CLUSTERING VIA ORDERED MEANS WITH APPLICATION TO GENE-EXPRESSION ANALYSIS. Annals of Statistics. 38: 3217-3244. PMID 21113321 DOI: 10.1214/10-AOS805  0.68
2010 Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, et al. High-resolution human genome structure by single-molecule analysis. Proceedings of the National Academy of Sciences of the United States of America. 107: 10848-53. PMID 20534489 DOI: 10.1073/pnas.0914638107  0.68
2009 Durkee BY, Shinki K, Newton MA, Iverson CE, Weichert JP, Dove WF, Halberg RB. Longitudinal assessment of colonic tumor fate in mice by computed tomography and optical colonoscopy. Academic Radiology. 16: 1475-82. PMID 19896065 DOI: 10.1016/j.acra.2009.07.023  0.68
2009 Huttlin EL, Chen X, Barrett-Wilt GA, Hegeman AD, Halberg RB, Harms AC, Newton MA, Dove WF, Sussman MR. Discovery and validation of colonic tumor-associated proteins via metabolic labeling and stable isotopic dilution. Proceedings of the National Academy of Sciences of the United States of America. 106: 17235-40. PMID 19805096 DOI: 10.1073/pnas.0909282106  0.68
2009 Stanhope SA, Sengupta S, den Boon J, Ahlquist P, Newton MA. Statistical use of argonaute expression and RISC assembly in microRNA target identification. Plos Computational Biology. 5: e1000516. PMID 19779550 DOI: 10.1371/journal.pcbi.1000516  0.68
2008 Albertini MR, Macklin MD, Zuleger CL, Newton MA, Judice SA, Albertini RJ. Clonal expansions of 6-thioguanine resistant T lymphocytes in the blood and tumor of melanoma patients. Environmental and Molecular Mutagenesis. 49: 676-87. PMID 18712786 DOI: 10.1002/em.20417  0.68
2008 Wu CY, Bird AJ, Chung LM, Newton MA, Winge DR, Eide DJ. Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae. Bmc Genomics. 9: 370. PMID 18673560 DOI: 10.1186/1471-2164-9-370  0.68
2008 Hao L, Sakurai A, Watanabe T, Sorensen E, Nidom CA, Newton MA, Ahlquist P, Kawaoka Y. Drosophila RNAi screen identifies host genes important for influenza virus replication. Nature. 454: 890-3. PMID 18615016 DOI: 10.1038/nature07151  0.68
2008 Sengupta S, den Boon JA, Chen IH, Newton MA, Stanhope SA, Cheng YJ, Chen CJ, Hildesheim A, Sugden B, Ahlquist P. MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 5874-8. PMID 18390668 DOI: 10.1073/pnas.0801130105  0.68
2008 Durkee BY, Mudd SR, Roen CN, Clipson L, Newton MA, Weichert JP, Pickhardt PJ, Halberg RB. Reproducibility of tumor volume measurement at microCT colonography in living mice. Academic Radiology. 15: 334-41. PMID 18280931 DOI: 10.1016/j.acra.2007.10.005  0.68
2007 Pyeon D, Newton MA, Lambert PF, den Boon JA, Sengupta S, Marsit CJ, Woodworth CD, Connor JP, Haugen TH, Smith EM, Kelsey KT, Turek LP, Ahlquist P. Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers. Cancer Research. 67: 4605-19. PMID 17510386 DOI: 10.1158/0008-5472.CAN-06-3619  0.68
2006 Dodd LE, Sengupta S, Chen IH, den Boon JA, Cheng YJ, Westra W, Newton MA, Mittl BF, McShane L, Chen CJ, Ahlquist P, Hildesheim A. Genes involved in DNA repair and nitrosamine metabolism and those located on chromosome 14q32 are dysregulated in nasopharyngeal carcinoma. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 15: 2216-25. PMID 17119049 DOI: 10.1158/1055-9965.EPI-06-0455  0.68
2006 Sengupta S, den Boon JA, Chen IH, Newton MA, Dahl DB, Chen M, Cheng YJ, Westra WH, Chen CJ, Hildesheim A, Sugden B, Ahlquist P. Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma. Cancer Research. 66: 7999-8006. PMID 16912175 DOI: 10.1158/0008-5472.CAN-05-4399  0.68
2004 Newton MA, Noueiry A, Sarkar D, Ahlquist P. Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics (Oxford, England). 5: 155-76. PMID 15054023 DOI: 10.1093/biostatistics/5.2.155  0.56
1996 Newton MA. Bootstrapping phylogenies: Large deviations and dispersion effects Biometrika. 83: 315-328.  0.68
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