Joseph G. Ibrahim - Publications

Affiliations: 
University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Biostatistics Biology, Statistics

267 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Diao G, Liu GF, Zeng D, Wang W, Tan X, Heyse JF, Ibrahim JG. Efficient Methods for Signal Detection from Correlated Adverse Events in Clinical Trials. Biometrics. PMID 30690717 DOI: 10.1111/biom.13031  0.64
2018 Wu J, Ibrahim JG, Chen MH, Schifano ED, Fisher JD. Bayesian Modeling and Inference for Nonignorably Missing Longitudinal Binary Response Data with Applications to HIV Prevention Trials. Statistica Sinica. 28: 1929-1963. PMID 30595637 DOI: 10.5705/ss.202016.0319  0.76
2018 Miranda MF, Zhu H, Ibrahim JG. TPRM: TENSOR PARTITION REGRESSION MODELS WITH APPLICATIONS IN IMAGING BIOMARKER DETECTION. The Annals of Applied Statistics. 12: 1422-1450. PMID 30416640 DOI: 10.1214/17-AOAS1116  0.8
2018 Zhu A, Ibrahim JG, Love MI. Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences. Bioinformatics (Oxford, England). PMID 30395178 DOI: 10.1093/bioinformatics/bty895  0.48
2018 Li T, Xie F, Feng X, Ibrahim JG, Zhu H. Functional Linear Regression Models for Nonignorable Missing Scalar Responses. Statistica Sinica. 28: 1867-1886. PMID 30344426 DOI: 10.5705/ss.202016.0350  0.8
2018 Ibrahim JG, Kim S, Chen MH, Shah AK, Lin J. Bayesian multivariate skew meta-regression models for individual patient data. Statistical Methods in Medical Research. 962280218801147. PMID 30309294 DOI: 10.1177/0962280218801147  0.76
2018 Gao F, Zeng D, Wei H, Wang X, Ibrahim JG. Estimating Treatment Effects for Recurrent Events in the Presence of Rescue Medications: An Application to the Immune Thrombocytopenia Study. Statistics in Biosciences. 10: 473-489. PMID 30298095 DOI: 10.1007/s12561-016-9164-x  0.64
2018 Zhao B, Ibrahim JG, Li Y, Li T, Wang Y, Shan Y, Zhu Z, Zhou F, Zhang J, Huang C, Liao H, Yang L, Thompson PM, Zhu H. Heritability of Regional Brain Volumes in Large-Scale Neuroimaging and Genetic Studies. Cerebral Cortex (New York, N.Y. : 1991). PMID 30010813 DOI: 10.1093/cercor/bhy157  0.8
2018 Li H, Chen MH, Ibrahim JG, Kim S, Shah AK, Lin J, Tershakovec AM. Bayesian inference for network meta-regression using multivariate random effects with applications to cholesterol lowering drugs. Biostatistics (Oxford, England). PMID 29912318 DOI: 10.1093/biostatistics/kxy014  0.76
2018 Yang H, Zhu H, Ibrahim JG. MILFM: Multiple index latent factor model based on high-dimensional features. Biometrics. PMID 29665616 DOI: 10.1111/biom.12866  0.8
2018 Diao G, Dong J, Zeng D, Ke C, Rong A, Ibrahim JG. Biomarker threshold adaptive designs for survival endpoints. Journal of Biopharmaceutical Statistics. 1-17. PMID 29436940 DOI: 10.1080/10543406.2018.1434191  0.64
2017 Tang N, Chow SM, Ibrahim JG, Zhu H. Bayesian Sensitivity Analysis of a Nonlinear Dynamic Factor Analysis Model with Nonparametric Prior and Possible Nonignorable Missingness. Psychometrika. PMID 29030749 DOI: 10.1007/s11336-017-9587-4  0.8
2017 Zhang J, Huang C, Ibrahim JG, Jha S, Knickmeyer RC, Gilmore JH, Styner M, Zhu H. HFPRM: Hierarchical Functional Principal Regression Model for Diffusion Tensor Image Bundle Statistics. Information Processing in Medical Imaging : Proceedings of the ... Conference. 10265: 478-489. PMID 28947871 DOI: 10.1007/978-3-319-59050-9_38  0.8
2017 Kong D, Ibrahim JG, Lee E, Zhu H. FLCRM: Functional linear cox regression model. Biometrics. PMID 28863246 DOI: 10.1111/biom.12748  0.8
2017 Gao F, Liu GF, Zeng D, Xu L, Lin B, Diao G, Golm G, Heyse JF, Ibrahim JG. Control-based imputation for sensitivity analyses in informative censoring for recurrent event data. Pharmaceutical Statistics. PMID 28834175 DOI: 10.1002/pst.1821  0.64
2017 Bower JJ, Vance LD, Psioda M, Smith-Roe SL, Simpson DA, Ibrahim JG, Hoadley KA, Perou CM, Kaufmann WK. Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells. Npj Breast Cancer. 3: 9. PMID 28649649 DOI: 10.1038/s41523-017-0009-7  0.44
2017 Ma X, Lian Q, Chu H, Ibrahim JG, Chen Y. A Bayesian hierarchical model for network meta-analysis of multiple diagnostic tests. Biostatistics (Oxford, England). PMID 28586407 DOI: 10.1093/biostatistics/kxx025  0.8
2017 Diao G, Zeng D, Hu K, Ibrahim JG. Modeling event count data in the presence of informative dropout with application to bleeding and transfusion events in myelodysplastic syndrome. Statistics in Medicine. PMID 28560768 DOI: 10.1002/sim.7351  0.64
2017 Lee E, Giovanello KS, Saykin AJ, Xie F, Kong D, Wang Y, Yang L, Ibrahim JG, Doraiswamy PM, Zhu H. Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients. Alzheimer's & Dementia (Amsterdam, Netherlands). 8: 86-95. PMID 28560309 DOI: 10.1016/j.dadm.2017.04.004  0.8
2017 Cornea E, Zhu H, Kim P, Ibrahim JG. Regression Models on Riemannian Symmetric Spaces. Journal of the Royal Statistical Society. Series B, Statistical Methodology. 79: 463-482. PMID 28529445 DOI: 10.1111/rssb.12169  0.8
2017 Gao F, Dong J, Zeng D, Rong A, Ibrahim JG. Pattern mixture models for clinical validation of biomarkers in the presence of missing data. Statistics in Medicine. PMID 28464562 DOI: 10.1002/sim.7328  0.64
2017 Diao G, Zeng D, Ibrahim JG, Rong A, Lee O, Zhang K, Chen Q. Statistical design of noninferiority multiple region clinical trials to assess global and consistent treatment effects. Journal of Biopharmaceutical Statistics. 1-12. PMID 28296570 DOI: 10.1080/10543406.2017.1293075  1
2017 Gao F, Liu G, Zeng D, Diao G, Heyse JF, Ibrahim JG. On inference of control-based imputation for analysis of repeated binary outcomes with missing data. Journal of Biopharmaceutical Statistics. 1-15. PMID 28287873 DOI: 10.1080/10543406.2017.1289957  0.64
2017 Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W. Bayesian Model Assessment in Joint Modeling of Longitudinal and Survival Data with Applications to Cancer Clinical Trials. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 26: 121-133. PMID 28239247 DOI: 10.1080/10618600.2015.1117472  0.76
2017 Lu ZH, Khondker Z, Ibrahim JG, Wang Y, Zhu H. Bayesian longitudinal low-rank regression models for imaging genetic data from longitudinal studies. Neuroimage. PMID 28143775 DOI: 10.1016/j.neuroimage.2017.01.052  0.8
2016 Rashid NU, Sun W, Ibrahim JG. A STATISTICAL MODEL TO ASSESS (ALLELE-SPECIFIC) ASSOCIATIONS BETWEEN GENE EXPRESSION AND EPIGENETIC FEATURES USING SEQUENCING DATA. The Annals of Applied Statistics. 10: 2254-2273. PMID 29034055 DOI: 10.1214/16-AOAS973  0.72
2016 Rao S, Ibrahim JG, Cheng J, Yap PT, Zhu H. SR-HARDI: Spatially Regularizing High Angular Resolution Diffusion Imaging. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 25: 1195-1211. PMID 27974868 DOI: 10.1080/10618600.2015.1105750  0.8
2016 Zhang D, Chen MH, Ibrahim JG, Boye ME, Shen W. JMFit: A SAS Macro for Joint Models of Longitudinal and Survival Data. Journal of Statistical Software. 71. PMID 27616941 DOI: 10.18637/jss.v071.i03  1
2016 Cribb JA, Osborne LD, Beicker K, Psioda M, Chen J, O'Brien ET, Taylor Ii RM, Vicci L, Hsiao JP, Shao C, Falvo M, Ibrahim JG, Wood KC, Blobe GC, Superfine R. An Automated High-throughput Array Microscope for Cancer Cell Mechanics. Scientific Reports. 6: 27371. PMID 27265611 DOI: 10.1038/srep27371  0.44
2016 Hertz DL, Deal A, Ibrahim JG, Walko CM, Weck KE, Anderson S, Magrinat G, Olajide O, Moore S, Raab R, Carrizosa DR, Corso S, Schwartz G, Graham M, Peppercorn JM, et al. Tamoxifen Dose Escalation in Patients With Diminished CYP2D6 Activity Normalizes Endoxifen Concentrations Without Increasing Toxicity. The Oncologist. PMID 27226358 DOI: 10.1634/theoncologist.2015-0480  1
2016 Zeng D, Gao F, Ibrahim JG, Hu K, Jia C. Reply to Comments. Statistics in Medicine. 35: 1560. PMID 27042812 DOI: 10.1002/sim.6824  1
2016 Cornea E, Zhu H, Kim P, Ibrahim JG. Regression models on Riemannian symmetric spaces Journal of the Royal Statistical Society. Series B: Statistical Methodology. DOI: 10.1111/rssb.12169  1
2015 Zhu H, Ibrahim JG, Chen MH. Diagnostic Measures for the Cox Regression Model with Missing Covariates. Biometrika. 102: 907-923. PMID 26903666 DOI: 10.1093/biomet/asv047  1
2015 Lee E, Zhu H, Kong D, Wang Y, Giovanello KS, Ibrahim JG. BFLCRM: A BAYESIAN FUNCTIONAL LINEAR COX REGRESSION MODEL FOR PREDICTING TIME TO CONVERSION TO ALZHEIMER'S DISEASE. The Annals of Applied Statistics. 9: 2153-2178. PMID 26900412 DOI: 10.1214/15-AOAS879  1
2015 Gelfond JA, Ibrahim JG, Chen MH, Sun W, Lewis K, Kinahan S, Hibbs M, Buffenstein R. Homology cluster differential expression analysis for interspecies mRNA-Seq experiments. Statistical Applications in Genetics and Molecular Biology. PMID 26595407 DOI: 10.1515/sagmb-2014-0056  1
2015 Sun Q, Zhu H, Liu Y, Ibrahim JG. SPReM: Sparse Projection Regression Model For High-dimensional Linear Regression. Journal of the American Statistical Association. 110: 289-302. PMID 26527844 DOI: 10.1080/01621459.2014.892008  1
2015 Cordeiro-Stone M, McNulty JJ, Sproul CD, Chastain PD, Gibbs-Flournoy E, Zhou Y, Carson C, Rao S, Mitchell DL, Simpson DA, Thomas NE, Ibrahim JG, Kaufmann WK. Effective Intra-S Checkpoint Responses to UVC in Primary Human Melanocytes and Melanoma Cell Lines. Pigment Cell & Melanoma Research. PMID 26437005 DOI: 10.1111/pcmr.12426  0.44
2015 Ibrahim JG, Chen MH, Gwon Y, Chen F. The power prior: theory and applications. Statistics in Medicine. PMID 26346180 DOI: 10.1002/sim.6728  1
2015 Yao H, Kim S, Chen MH, Ibrahim JG, Shah AK, Lin J. Bayesian Inference for Multivariate Meta-regression with a Partially Observed Within-Study Sample Covariance Matrix. Journal of the American Statistical Association. 110: 528-544. PMID 26257452 DOI: 10.1080/01621459.2015.1006065  0.76
2015 Garcia RI, Ibrahim JG, Wambaugh JF, Kenyon EM, Setzer RW. Identifiability of PBPK models with applications to dimethylarsinic acid exposure. Journal of Pharmacokinetics and Pharmacodynamics. PMID 26194069 DOI: 10.1007/s10928-015-9424-2  1
2015 Gould AL, Boye ME, Crowther MJ, Ibrahim JG, Quartey G, Micallef S, Bois FY. Responses to discussants of 'Joint modeling of survival and longitudinal non-survival data: current methods and issues. report of the DIA Bayesian joint modeling working group'. Statistics in Medicine. 34: 2202-3. PMID 26032839 DOI: 10.1002/sim.6502  0.76
2015 Hertz DL, Snavely AC, McLeod HL, Walko CM, Ibrahim JG, Anderson S, Weck KE, Magrinat G, Olajide O, Moore S, Raab R, Carrizosa DR, Corso S, Schwartz G, Peppercorn JM, et al. In Vivo Assessment of the Metabolic Activity of CYP2D6 Diplotypes and Alleles. British Journal of Clinical Pharmacology. PMID 25907378 DOI: 10.1111/bcp.12665  1
2015 Zeng D, Gao F, Hu K, Jia C, Ibrahim JG. Hypothesis testing for two-stage designs with over or under enrollment. Statistics in Medicine. 34: 2417-26. PMID 25809924 DOI: 10.1002/sim.6490  1
2015 Zeng D, Chen MH, Ibrahim JG, Wei R, Ding B, Ke C, Jiang Q. A counterfactual p-value approach for benefit-risk assessment in clinical trials. Journal of Biopharmaceutical Statistics. 25: 508-24. PMID 25723915 DOI: 10.1080/10543406.2014.921514  0.76
2015 Ibrahim JG, Chen MH, Lakshminarayanan M, Liu GF, Heyse JF. Bayesian probability of success for clinical trials using historical data. Statistics in Medicine. 34: 249-64. PMID 25339499 DOI: 10.1002/sim.6339  1
2015 Chastain PD, Brylawski BP, Zhou YC, Rao S, Chu H, Ibrahim JG, Kaufmann WK, Cordeiro-Stone M. DNA damage checkpoint responses in the S phase of synchronized diploid human fibroblasts. Photochemistry and Photobiology. 91: 109-16. PMID 25316620 DOI: 10.1111/php.12361  1
2015 Chen Q, Zeng D, Ibrahim JG, Chen MH, Pan Z, Xue X. Quantifying the average of the time-varying hazard ratio via a class of transformations. Lifetime Data Analysis. 21: 259-79. PMID 25073864 DOI: 10.1007/s10985-014-9301-0  1
2015 Barry WT, Perou CM, Marcom PK, Carey LA, Ibrahim JG. The use of Bayesian hierarchical models for adaptive randomization in biomarker-driven phase II studies. Journal of Biopharmaceutical Statistics. 25: 66-88. PMID 24836519 DOI: 10.1080/10543406.2014.919933  1
2015 Lawrence Gould A, Boye ME, Crowther MJ, Ibrahim JG, Quartey G, Micallef S, Bois FY. Joint modeling of survival and longitudinal non-survival data: current methods and issues. Report of the DIA Bayesian joint modeling working group. Statistics in Medicine. 34: 2181-95. PMID 24634327 DOI: 10.1002/sim.6141  1
2014 Zhu H, Ibrahim JG, Chen Q. Bayesian Case-deletion Model Complexity and Information Criterion. Statistics and Its Interface. 7: 531-542. PMID 26180578 DOI: 10.4310/SII.2014.v7.n4.a9  1
2014 Zeng D, Cornea E, Dong J, Pan J, Ibrahim JG. Assessing temporal agreement between central and local progression-free survival times. Statistics in Medicine. 34: 844-58. PMID 25393731 DOI: 10.1002/sim.6371  1
2014 Zhu H, Khondker Z, Lu Z, Ibrahim JG. Bayesian Generalized Low Rank Regression Models for Neuroimaging Phenotypes and Genetic Markers. Journal of the American Statistical Association. 109: 997-990. PMID 25349462 DOI: 10.1080/01621459.2014.923775  1
2014 Chen Q, Ibrahim JG. A note on the relationships between multiple imputation, maximum likelihood and fully Bayesian methods for missing responses in linear regression models. Statistics and Its Interface. 6: 315-324. PMID 25309677 DOI: 10.4310/SII.2013.v6.n3.a2  1
2014 Lin JA, Zhu H, Mihye A, Sun W, Ibrahim JG. Functional-mixed effects models for candidate genetic mapping in imaging genetic studies. Genetic Epidemiology. 38: 680-91. PMID 25270690 DOI: 10.1002/gepi.21854  1
2014 Zhang D, Chen MH, Ibrahim JG, Boye ME, Wang P, Shen W. Assessing model fit in joint models of longitudinal and survival data with applications to cancer clinical trials. Statistics in Medicine. 33: 4715-33. PMID 25044061 DOI: 10.1002/sim.6269  1
2014 Chen MH, Ibrahim JG, Zeng D, Hu K, Jia C. Bayesian design of superiority clinical trials for recurrent events data with applications to bleeding and transfusion events in myelodyplastic syndrome. Biometrics. 70: 1003-13. PMID 25041037 DOI: 10.1111/biom.12215  1
2014 Chen Q, May RC, Ibrahim JG, Chu H, Cole SR. Joint modeling of longitudinal and survival data with missing and left-censored time-varying covariates. Statistics in Medicine. 33: 4560-76. PMID 24947785 DOI: 10.1002/sim.6242  1
2014 DE Castro M, Chen MH, Ibrahim JG, Klein JP. Bayesian Transformation Models for Multivariate Survival Data. Scandinavian Journal of Statistics, Theory and Applications. 41: 187-199. PMID 24904194 DOI: 10.1111/sjos.12010  1
2014 Bradshaw PT, Ibrahim JG, Khankari N, Cleveland RJ, Abrahamson PE, Stevens J, Satia JA, Teitelbaum SL, Neugut AI, Gammon MD. Post-diagnosis physical activity and survival after breast cancer diagnosis: the Long Island Breast Cancer Study. Breast Cancer Research and Treatment. 145: 735-42. PMID 24789444 DOI: 10.1007/s10549-014-2966-y  1
2014 Zhu H, Ibrahim JG, Tang N. Bayesian Sensitivity Analysis of Statistical Models with Missing Data. Statistica Sinica. 24: 871-896. PMID 24753718 DOI: 10.5705/ss.2012.126  1
2014 Chen LM, Ibrahim JG, Chu H. Flexible stopping boundaries when changing primary endpoints after unblinded interim analyses. Journal of Biopharmaceutical Statistics. 24: 817-33. PMID 24697500 DOI: 10.1080/10543406.2014.901341  1
2014 Chen LM, Ibrahim JG, Chu H. Sample size determination in shared frailty models for multivariate time-to-event data. Journal of Biopharmaceutical Statistics. 24: 908-23. PMID 24697252 DOI: 10.1080/10543406.2014.901346  1
2014 Sanoff HK, Deal AM, Krishnamurthy J, Torrice C, Dillon P, Sorrentino J, Ibrahim JG, Jolly TA, Williams G, Carey LA, Drobish A, Gordon BB, Alston S, Hurria A, Kleinhans K, et al. Effect of cytotoxic chemotherapy on markers of molecular age in patients with breast cancer. Journal of the National Cancer Institute. 106: dju057. PMID 24681605 DOI: 10.1093/jnci/dju057  1
2014 Rashid NU, Sun W, Ibrahim JG. Some Statistical Strategies for DAE-seq Data Analysis: Variable Selection and Modeling Dependencies among Observations. Journal of the American Statistical Association. 109: 78-94. PMID 24678134 DOI: 10.1080/01621459.2013.869222  1
2014 Kaufmann WK, Carson CC, Omolo B, Filgo AJ, Sambade MJ, Simpson DA, Shields JM, Ibrahim JG, Thomas NE. Mechanisms of chromosomal instability in melanoma. Environmental and Molecular Mutagenesis. 55: 457-71. PMID 24616037 DOI: 10.1002/em.21859  1
2014 Zeng D, Ibrahim JG, Chen MH, Hu K, Jia C. Multivariate recurrent events in the presence of multivariate informative censoring with applications to bleeding and transfusion events in myelodysplastic syndrome. Journal of Biopharmaceutical Statistics. 24: 429-42. PMID 24605978 DOI: 10.1080/10543406.2013.860159  1
2014 Chen MH, Ibrahim JG, Amy Xia H, Liu T, Hennessey V. Bayesian sequential meta-analysis design in evaluating cardiovascular risk in a new antidiabetic drug development program. Statistics in Medicine. 33: 1600-18. PMID 24343859 DOI: 10.1002/sim.6067  1
2014 Nikolaishvilli-Feinberg N, Cohen SM, Midkiff B, Zhou Y, Olorvida M, Ibrahim JG, Omolo B, Shields JM, Thomas NE, Groben PA, Kaufmann WK, Miller CR. Development of DNA damage response signaling biomarkers using automated, quantitative image analysis. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 62: 185-96. PMID 24309508 DOI: 10.1369/0022155413516469  1
2014 Viele K, Berry S, Neuenschwander B, Amzal B, Chen F, Enas N, Hobbs B, Ibrahim JG, Kinnersley N, Lindborg S, Micallef S, Roychoudhury S, Thompson L. Use of historical control data for assessing treatment effects in clinical trials. Pharmaceutical Statistics. 13: 41-54. PMID 23913901 DOI: 10.1002/pst.1589  1
2014 Zhang Y, Chen MH, Ibrahim JG, Zeng D, Chen Q, Pan Z, Xue X. Bayesian gamma frailty models for survival data with semi-competing risks and treatment switching. Lifetime Data Analysis. 20: 76-105. PMID 23543121 DOI: 10.1007/s10985-013-9254-8  1
2013 Khondker ZS, Zhu H, Chu H, Lin W, Ibrahim JG. The Bayesian Covariance Lasso. Statistics and Its Interface. 6: 243-259. PMID 24551316  1
2013 Chen Q, Zeng D, Ibrahim JG, Akacha M, Schmidli H. Estimating time-varying effects for overdispersed recurrent events data with treatment switching. Biometrika. 100: 339-354. PMID 24465031 DOI: 10.1093/biomet/ass091  1
2013 Sproul CD, Mitchell DL, Rao S, Ibrahim JG, Kaufmann WK, Cordeiro-Stone M. Cyclobutane Pyrimidine Dimer Density as a Predictive Biomarker of the Biological Effects of Ultraviolet Radiation in Normal Human Fibroblast. Photochemistry and Photobiology. PMID 24148148 DOI: 10.1111/php.12194  1
2013 Miranda MF, Zhu H, Ibrahim JG. Bayesian spatial transformation models with applications in neuroimaging data. Biometrics. 69: 1074-83. PMID 24128143 DOI: 10.1111/biom.12085  1
2013 Sproul CD, Rao S, Ibrahim JG, Kaufmann WK, Cordeiro-Stone M. Is activation of the intra-S checkpoint in human fibroblasts an important factor in protection against UV-induced mutagenesis? Cell Cycle (Georgetown, Tex.). 12: 3555-63. PMID 24091629 DOI: 10.4161/cc.26590  1
2013 Bryant C, Giovanello KS, Ibrahim JG, Chang J, Shen D, Peterson BS, Zhu H. Mapping the genetic variation of regional brain volumes as explained by all common SNPs from the ADNI study. Plos One. 8: e71723. PMID 24015190 DOI: 10.1371/journal.pone.0071723  1
2013 Gelfond JA, Ibrahim JG, Gupta M, Chen MH, Cody JD. Differential expression analysis with global network adjustment. Bmc Bioinformatics. 14: 258. PMID 23968143 DOI: 10.1186/1471-2105-14-258  1
2013 Lipsitz SR, Fitzmaurice GM, Regenbogen SE, Sinha D, Ibrahim JG, Gawande AA. Bias correction for the proportional odds logistic regression model with application to a study of surgical complications. Journal of the Royal Statistical Society. Series C, Applied Statistics. 62: 233-250. PMID 23913986 DOI: 10.1111/j.1467-9876.2012.01057.x  1
2013 May RC, Chu H, Ibrahim JG, Hudgens MG, Lees AC, Margolis DM. Change-point models to estimate the limit of detection. Statistics in Medicine. 32: 4995-5007. PMID 23784922 DOI: 10.1002/sim.5872  1
2013 Chen Q, Chen MH, Ohlssen D, Ibrahim JG. Bayesian modeling and inference for clinical trials with partial retrieved data following dropout. Statistics in Medicine. 32: 4180-95. PMID 23620446 DOI: 10.1002/sim.5812  1
2013 Kim S, Chen MH, Ibrahim JG, Shah AK, Lin J. Bayesian inference for multivariate meta-analysis Box-Cox transformation models for individual patient data with applications to evaluation of cholesterol-lowering drugs. Statistics in Medicine. 32: 3972-90. PMID 23580436 DOI: 10.1002/sim.5814  1
2013 Omolo B, Carson C, Chu H, Zhou Y, Simpson DA, Hesse JE, Paules RS, Nyhan KC, Ibrahim JG, Kaufmann WK. A prognostic signature of G(2) checkpoint function in melanoma cell lines. Cell Cycle (Georgetown, Tex.). 12: 1071-82. PMID 23454897 DOI: 10.4161/cc.24067  1
2013 Smith-Roe SL, Patel SS, Zhou Y, Simpson DA, Rao S, Ibrahim JG, Cordeiro-Stone M, Kaufmann WK. Separation of intra-S checkpoint protein contributions to DNA replication fork protection and genomic stability in normal human fibroblasts. Cell Cycle (Georgetown, Tex.). 12: 332-45. PMID 23255133 DOI: 10.4161/cc.23177  1
2012 Natarajan S, Lipsitz SR, Fitzmaurice GM, Sinha D, Ibrahim JG, Haas J, Gellad W. An extension of the Wilcoxon Rank-Sum test for complex sample survey data. Journal of the Royal Statistical Society. Series C, Applied Statistics. 61: 653-664. PMID 23913985 DOI: 10.1111/j.1467-9876.2011.01028.x  1
2012 Shi X, Zhu H, Ibrahim JG, Liang F, Lieberman J, Styner M. Intrinsic Regression Models for Medial Representation of Subcortical Structures. Journal of the American Statistical Association. 107: 12-23. PMID 23794769 DOI: 10.1080/01621459.2011.643710  0.8
2012 Zhu H, Ibrahim JG, Cho H, Tang N. Bayesian Case Influence Measures for Statistical Models with Missing Data. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 21: 253-271. PMID 23399928 DOI: 10.1198/jcgs.2011.10139  1
2012 Ma GJ, Chi E, Ibrahim JG, Parker RA. Assessing Similarity to Existing Drugs to Decide Whether to Continue Drug Development. Statistics in Biopharmaceutical Research. 4: 293-300. PMID 23393611 DOI: 10.1080/19466315.2012.698933  1
2012 Ibrahim JG, Chen MH, Chu H. Bayesian methods in clinical trials: a Bayesian analysis of ECOG trials E1684 and E1690. Bmc Medical Research Methodology. 12: 183. PMID 23194570 DOI: 10.1186/1471-2288-12-183  1
2012 Zhu H, Ibrahim JG, Cho H. PERTURBATION AND SCALED COOK'S DISTANCE. Annals of Statistics. 40: 785-811. PMID 23152646 DOI: 10.1214/12-AOS978  1
2012 Zeng D, Chen Q, Chen MH, Ibrahim JG. Estimating treatment effects with treatment switching via semicompeting risks models: an application to a colorectal cancer study. Biometrika. 99: 167-184. PMID 23049136 DOI: 10.1093/biomet/asr062  1
2012 Chen MH, Ibrahim JG, Shah AK, Lin J, Yao H. Meta-analysis methods and models with applications in evaluation of cholesterol-lowering drugs. Statistics in Medicine. 31: 3597-616. PMID 22829358 DOI: 10.1002/sim.5462  1
2012 Lin JA, Zhu H, Knickmeyer R, Styner M, Gilmore J, Ibrahim JG. Projection regression models for multivariate imaging phenotype. Genetic Epidemiology. 36: 631-41. PMID 22807230 DOI: 10.1002/gepi.21658  1
2012 Ibrahim JG, Chu H, Chen MH. Missing data in clinical studies: issues and methods. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 30: 3297-303. PMID 22649133 DOI: 10.1200/JCO.2011.38.7589  1
2012 Carson C, Omolo B, Chu H, Zhou Y, Sambade MJ, Peters EC, Tompkins P, Simpson DA, Thomas NE, Fan C, Sarasin A, Dessen P, Shields JM, Ibrahim JG, Kaufmann WK. A prognostic signature of defective p53-dependent G1 checkpoint function in melanoma cell lines. Pigment Cell & Melanoma Research. 25: 514-26. PMID 22540896 DOI: 10.1111/j.1755-148X.2012.01010.x  1
2012 Fyall KM, Fong AM, Rao SB, Ibrahim JG, Waxweiler WT, Thomas NE. The TBX21 transcription factor T-1993C polymorphism is associated with decreased IFN-γ and IL-4 production by primary human lymphocytes. Human Immunology. 73: 673-6. PMID 22521571 DOI: 10.1016/j.humimm.2012.03.005  1
2012 Zhu H, Ibrahim JG, Chi YY, Tang N. Bayesian influence measures for joint models for longitudinal and survival data. Biometrics. 68: 954-64. PMID 22385010 DOI: 10.1111/j.1541-0420.2012.01745.x  1
2012 Guo R, Zhu H, Chow SM, Ibrahim JG. Bayesian lasso for semiparametric structural equation models. Biometrics. 68: 567-77. PMID 22376150 DOI: 10.1111/j.1541-0420.2012.01751.x  1
2012 Bradshaw PT, Ibrahim JG, Stevens J, Cleveland R, Abrahamson PE, Satia JA, Teitelbaum SL, Neugut AI, Gammon MD. Postdiagnosis change in bodyweight and survival after breast cancer diagnosis. Epidemiology (Cambridge, Mass.). 23: 320-7. PMID 22317813 DOI: 10.1097/EDE.0b013e31824596a1  1
2012 Ibrahim JG, Chen MH, Xia HA, Liu T. Bayesian meta-experimental design: evaluating cardiovascular risk in new antidiabetic therapies to treat type 2 diabetes. Biometrics. 68: 578-86. PMID 21955084 DOI: 10.1111/j.1541-0420.2011.01679.x  1
2011 Zhu H, Ibrahim JG, Tang N. Bayesian influence analysis: a geometric approach. Biometrika. 98: 307-323. PMID 24453379 DOI: 10.1093/biomet/asr009  1
2011 Li Y, Zhu H, Shen D, Lin W, Gilmore JH, Ibrahim JG. Multiscale Adaptive Regression Models for Neuroimaging Data. Journal of the Royal Statistical Society. Series B, Statistical Methodology. 73: 559-578. PMID 21860598 DOI: 10.1111/j.1467-9868.2010.00767.x  1
2011 Rashid NU, Giresi PG, Ibrahim JG, Sun W, Lieb JD. ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions. Genome Biology. 12: R67. PMID 21787385 DOI: 10.1186/gb-2011-12-7-r67  1
2011 Irvin WJ, Walko CM, Weck KE, Ibrahim JG, Chiu WK, Dees EC, Moore SG, Olajide OA, Graham ML, Canale ST, Raab RE, Corso SW, Peppercorn JM, Anderson SM, Friedman KJ, et al. Genotype-guided tamoxifen dosing increases active metabolite exposure in women with reduced CYP2D6 metabolism: a multicenter study. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 29: 3232-9. PMID 21768473 DOI: 10.1200/JCO.2010.31.4427  1
2011 Shi X, Ibrahim JG, Lieberman J, Styner M, Zhu H. TWO-STAGE EMPIRICAL LIKELIHOOD FOR LONGITUDINAL NEUROIMAGING DATA. The Annals of Applied Statistics. 5: 1132-1158. PMID 21765885 DOI: 10.1214/11-AOAS480  1
2011 May RC, Ibrahim JG, Chu H. Maximum likelihood estimation in generalized linear models with multiple covariates subject to detection limits. Statistics in Medicine. 30: 2551-61. PMID 21710558 DOI: 10.1002/sim.4280  1
2011 Chen LM, Ibrahim JG, Chu H. Sample size and power determination in joint modeling of longitudinal and survival data. Statistics in Medicine. 30: 2295-309. PMID 21590793 DOI: 10.1002/sim.4263  1
2011 Parzen M, Ghosh S, Lipsitz S, Sinha D, Fitzmaurice GM, Mallick BK, Ibrahim JG. A generalized linear mixed model for longitudinal binary data with a marginal logit link function. The Annals of Applied Statistics. 5: 449-467. PMID 21532998 DOI: 10.1214/10-AOAS390  1
2011 Smith-Roe SL, Patel SS, Simpson DA, Zhou YC, Rao S, Ibrahim JG, Kaiser-Rogers KA, Cordeiro-Stone M, Kaufmann WK. Timeless functions independently of the Tim-Tipin complex to promote sister chromatid cohesion in normal human fibroblasts. Cell Cycle (Georgetown, Tex.). 10: 1618-24. PMID 21508667 DOI: 10.4161/cc.10.10.15613  1
2011 Chen MH, Ibrahim JG, Lam P, Yu A, Zhang Y. Bayesian design of noninferiority trials for medical devices using historical data. Biometrics. 67: 1163-70. PMID 21361889 DOI: 10.1111/j.1541-0420.2011.01561.x  1
2011 Sinha SK, Troxel AB, Lipsitz SR, Sinha D, Fitzmaurice GM, Molenberghs G, Ibrahim JG. A bivariate pseudolikelihood for incomplete longitudinal binary data with nonignorable nonmonotone missingness. Biometrics. 67: 1119-26. PMID 21155748 DOI: 10.1111/j.1541-0420.2010.01525.x  1
2011 Ibrahim JG, Zhu H, Garcia RI, Guo R. Fixed and random effects selection in mixed effects models. Biometrics. 67: 495-503. PMID 20662831 DOI: 10.1111/j.1541-0420.2010.01463.x  1
2011 Ibrahim JG, Zhu H, Tang N. Bayesian local influence for survival models. Lifetime Data Analysis. 17: 43-70. PMID 20526807 DOI: 10.1007/s10985-010-9170-0  1
2011 Ibrahim JG, Zhu H, Tang N. Rejoinder: Bayesian local influence for survival models Lifetime Data Analysis. 17: 76-79. DOI: 10.1007/s10985-010-9182-9  1
2010 Bradshaw PT, Ibrahim JG, Gammon MD. A Bayesian proportional hazards regression model with non-ignorably missing time-varying covariates. Statistics in Medicine. 29: 3017-29. PMID 20960582 DOI: 10.1002/sim.4076  1
2010 Watson RG, Muhale F, Thorne LB, Yu J, O'Neil BH, Hoskins JM, Meyers MO, Deal AM, Ibrahim JG, Hudson ML, Walko CM, McLeod HL, Auman JT. Amplification of thymidylate synthetase in metastatic colorectal cancer patients pretreated with 5-fluorouracil-based chemotherapy. European Journal of Cancer (Oxford, England : 1990). 46: 3358-64. PMID 20727737 DOI: 10.1016/j.ejca.2010.07.011  1
2010 Chastain PD, Nakamura J, Rao S, Chu H, Ibrahim JG, Swenberg JA, Kaufman DG. Abasic sites preferentially form at regions undergoing DNA replication. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 24: 3674-80. PMID 20511393 DOI: 10.1096/fj.09-145276  0.8
2010 Ibrahim JG, Chu H, Chen LM. Basic concepts and methods for joint models of longitudinal and survival data. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 28: 2796-801. PMID 20439643 DOI: 10.1200/JCO.2009.25.0654  1
2010 Garcia RI, Ibrahim JG, Zhu H. VARIABLE SELECTION FOR REGRESSION MODELS WITH MISSING DATA. Statistica Sinica. 20: 149-165. PMID 20336190  1
2010 Zou F, Huang H, Ibrahim JG. A semiparametric Bayesian approach for estimating the gene expression distribution. Journal of Biopharmaceutical Statistics. 20: 267-80. PMID 20309758 DOI: 10.1080/10543400903572746  1
2010 Troxel AB, Lipsitz SR, Fitzmaurice GM, Ibrahim JG, Sinha D, Molenberghs G. A weighted combination of pseudo-likelihood estimators for longitudinal binary data subject to non-ignorable non-monotone missingness. Statistics in Medicine. 29: 1511-21. PMID 20205269 DOI: 10.1002/sim.3867  1
2010 Chu H, Zhou Y, Cole SR, Ibrahim JG. On the estimation of disease prevalence by latent class models for screening studies using two screening tests with categorical disease status verified in test positives only. Statistics in Medicine. 29: 1206-18. PMID 20191614 DOI: 10.1002/sim.3862  1
2010 Sun W, Ibrahim JG, Zou F. Genomewide multiple-loci mapping in experimental crosses by iterative adaptive penalized regression. Genetics. 185: 349-59. PMID 20157003 DOI: 10.1534/genetics.110.114280  1
2010 Vinikoor LC, Millikan RC, Satia JA, Schroeder JC, Martin CF, Ibrahim JG, Sandler RS. trans-Fatty acid consumption and its association with distal colorectal cancer in the North Carolina Colon Cancer Study II. Cancer Causes & Control : Ccc. 21: 171-80. PMID 19842051 DOI: 10.1007/s10552-009-9447-3  1
2010 Yanni SB, Annaert PP, Augustijns P, Ibrahim JG, Benjamin DK, Thakker DR. In vitro hepatic metabolism explains higher clearance of voriconazole in children versus adults: role of CYP2C19 and flavin-containing monooxygenase 3. Drug Metabolism and Disposition: the Biological Fate of Chemicals. 38: 25-31. PMID 19841059 DOI: 10.1124/dmd.109.029769  1
2010 Garcia RI, Ibrahim JG, Zhu H. Variable selection in the cox regression model with covariates missing at random. Biometrics. 66: 97-104. PMID 19459831 DOI: 10.1111/j.1541-0420.2009.01274.x  1
2009 Zeng D, Chen Q, Ibrahim JG. Gamma frailty transformation models for multivariate survival times. Biometrika. 96: 277-291. PMID 24948838 DOI: 10.1093/biomet/asp008  1
2009 Gupta M, Ibrahim JG. An Information Matrix Prior for Bayesian Analysis in Generalized Linear Models with High Dimensional Data. Statistica Sinica. 19: 1641-1663. PMID 20664718  1
2009 Lipsitz SR, Fitzmaurice GM, Ibrahim JG, Sinha D, Parzen M, Lipshultz S. Joint generalized estimating equations for multivariate longitudinal binary outcomes with missing data: An application to AIDS data. Journal of the Royal Statistical Society. Series a, (Statistics in Society). 172: 3-20. PMID 20585409 DOI: 10.1111/j.1467-985X.2008.00564.x  1
2009 Shi X, Styner M, Lieberman J, Ibrahim JG, Lin W, Zhu H. Intrinsic regression models for manifold-valued data. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12: 192-9. PMID 20426112  1
2009 Zhu H, Chen Y, Ibrahim JG, Li Y, Hall C, Lin W. Intrinsic Regression Models for Positive-Definite Matrices With Applications to Diffusion Tensor Imaging. Journal of the American Statistical Association. 104: 1203-1212. PMID 20174601  0.8
2009 Zhu H, Ibrahim JG, Shi X. Diagnostic Measures for Generalized Linear Models with Missing Covariates. Scandinavian Journal of Statistics, Theory and Applications. 36: 686-712. PMID 20037674 DOI: 10.1111/j.1467-9469.2009.00644.x  1
2009 Shi X, Styner M, Lieberman J, Ibrahim JG, Lin W, Zhu H. Intrinsic Regression Models for Manifold-Valued Data. Journal of the American Statistical Association. 5762: 192-199. PMID 19960103 DOI: 10.1007/978-3-642-04271-3_24  1
2009 Zhu H, Li Y, Ibrahim JG, Shi X, An H, Chen Y, Gao W, Lin W, Rowe DB, Peterson BS. Regression Models for Identifying Noise Sources in Magnetic Resonance Images. Journal of the American Statistical Association. 104: 623-637. PMID 19890478 DOI: 10.1198/jasa.2009.0029  0.8
2009 Vinikoor LC, Satia JA, Schroeder JC, Millikan RC, Martin CF, Ibrahim JG, Sandler RS. Associations between trans fatty acid consumption and colon cancer among Whites and African Americans in the North Carolina colon cancer study I. Nutrition and Cancer. 61: 427-36. PMID 19838914 DOI: 10.1080/01635580802710725  1
2009 Chen MH, Ibrahim JG, Shao QM. Maximum Likelihood Inference for the Cox Regression Model with Applications to Missing Covariates. Journal of Multivariate Analysis. 100: 2018-2030. PMID 19802375 DOI: 10.1016/j.jmva.2009.03.013  1
2009 Zhu H, Li Y, Ibrahim JG, Lin W, Shen D. MARM: multiscale adaptive regression models for neuroimaging data. Information Processing in Medical Imaging : Proceedings of the ... Conference. 21: 314-25. PMID 19694273 DOI: 10.1007/978-3-642-02498-6_26  1
2009 Chu H, Cole SR, Wei Y, Ibrahim JG. Estimation and inference for case-control studies with multiple non-gold standard exposure assessments: with an occupational health application. Biostatistics (Oxford, England). 10: 591-602. PMID 19515637 DOI: 10.1093/biostatistics/kxp015  1
2009 Liu Y, Sanoff HK, Cho H, Burd CE, Torrice C, Ibrahim JG, Thomas NE, Sharpless NE. Expression of p16(INK4a) in peripheral blood T-cells is a biomarker of human aging. Aging Cell. 8: 439-48. PMID 19485966 DOI: 10.1111/j.1474-9726.2009.00489.x  1
2009 Liu Y, Sanoff HK, Cho H, Burd CE, Torrice C, Mohlke KL, Ibrahim JG, Thomas NE, Sharpless NE. INK4/ARF transcript expression is associated with chromosome 9p21 variants linked to atherosclerosis. Plos One. 4: e5027. PMID 19343170 DOI: 10.1371/journal.pone.0005027  1
2009 Shi X, Zhu H, Ibrahim JG. Local influence for generalized linear models with missing covariates. Biometrics. 65: 1164-74. PMID 19210738 DOI: 10.1111/j.1541-0420.2008.01179.x  1
2009 Gelfond JA, Gupta M, Ibrahim JG. A Bayesian hidden Markov model for motif discovery through joint modeling of genomic sequence and ChIP-chip data. Biometrics. 65: 1087-95. PMID 19210737 DOI: 10.1111/j.1541-0420.2008.01180.x  1
2009 Tran N, Qu PP, Simpson DA, Lindsey-Boltz L, Guan X, Schmitt CP, Ibrahim JG, Kaufmann WK. In silico construction of a protein interaction landscape for nucleotide excision repair. Cell Biochemistry and Biophysics. 53: 101-14. PMID 19156361 DOI: 10.1007/s12013-009-9042-y  1
2009 Cheng F, Hartmann S, Gupta M, Ibrahim JG, Vision TJ. A hierarchical model for incomplete alignments in phylogenetic inference. Bioinformatics (Oxford, England). 25: 592-8. PMID 19147663 DOI: 10.1093/bioinformatics/btp015  1
2009 Cho H, Ibrahim JG, Sinha D, Zhu H. Bayesian case influence diagnostics for survival models. Biometrics. 65: 116-24. PMID 18422991 DOI: 10.1111/j.1541-0420.2008.01037.x  1
2009 Ibrahim JG. Comment: Incomplete data in clinical studies: Analysis, sensitivity, and sensitivity analysis Drug Information Journal. 43: 431-432. DOI: 10.1198/016214507000000752  1
2009 Ibrahim JG, Molenberghs G. Rejoinder on: Missing data methods in longitudinal studies: A review Test. 18: 68-75. DOI: 10.1007/s11749-009-0144-z  1
2008 Ibrahim JG, Zhu H, Tang N. Model Selection Criteria for Missing-Data Problems Using the EM Algorithm. Journal of the American Statistical Association. 103: 1648-1658. PMID 19693282 DOI: 10.1198/016214508000001057  1
2008 Chen MH, Ibrahim JG, Chi YY. A new class of mixture models for differential gene expression in DNA microarray data. Journal of Statistical Planning and Inference. 138: 387-404. PMID 19672331 DOI: 10.1016/j.jspi.2007.06.007  1
2008 Chen MH, Ibrahim JG, Kim S. Properties and Implementation of Jeffreys's Prior in Binomial Regression Models. Journal of the American Statistical Association. 103: 1659-1664. PMID 19436775 DOI: 10.1198/016214508000000779  1
2008 Chen MH, Huang L, Ibrahim JG, Kim S. Bayesian Variable Selection and Computation for Generalized Linear Models with Conjugate Priors. Bayesian Analysis (Online). 3: 585-614. PMID 19436774 DOI: 10.1214/08-BA323  1
2008 Sinha D, Maiti T, Ibrahim JG, Ouyang B. Current Methods for Recurrent Events Data with Dependent Termination: A Bayesian Perspective. Journal of the American Statistical Association. 103: 866-878. PMID 19169433 DOI: 10.1198/016214508000000201  1
2008 Chen Q, Ibrahim JG, Chen MH, Senchaudhuri P. Theory and Inference for Regression Models with Missing Responses and Covariates. Journal of Multivariate Analysis. 99: 1302-1331. PMID 19169388 DOI: 10.1016/j.jmva.2007.08.009  1
2008 Ibrahim JG, Chen MH, Kim S. Bayesian variable selection for the Cox regression model with missing covariates. Lifetime Data Analysis. 14: 496-520. PMID 18836829 DOI: 10.1007/s10985-008-9101-5  1
2008 Yuan Y, Zhu H, Ibrahim JG, Lin W, Peterson BS. A note on the validity of statistical bootstrapping for estimating the uncertainty of tensor parameters in diffusion tensor images. Ieee Transactions On Medical Imaging. 27: 1506-14. PMID 18815102 DOI: 10.1109/TMI.2008.926069  1
2008 Kaufmann WK, Nevis KR, Qu P, Ibrahim JG, Zhou T, Zhou Y, Simpson DA, Helms-Deaton J, Cordeiro-Stone M, Moore DT, Thomas NE, Hao H, Liu Z, Shields JM, Scott GA, et al. Defective cell cycle checkpoint functions in melanoma are associated with altered patterns of gene expression. The Journal of Investigative Dermatology. 128: 175-87. PMID 17597816 DOI: 10.1038/sj.jid.5700935  1
2008 Zhu H, Ibrahim JG, Tang N, Zhang H. Diagnostic measures for empirical likelihood of general estimating equations Biometrika. 95: 489-507. DOI: 10.1093/biomet/asm094  1
2007 Woods CG, Kosyk O, Bradford BU, Ross PK, Burns AM, Cunningham ML, Qu P, Ibrahim JG, Rusyn I. Time course investigation of PPARalpha- and Kupffer cell-dependent effects of WY-14,643 in mouse liver using microarray gene expression. Toxicology and Applied Pharmacology. 225: 267-77. PMID 17950772 DOI: 10.1016/j.taap.2007.08.028  1
2007 Hoskins JM, Goldberg RM, Qu P, Ibrahim JG, McLeod HL. UGT1A1*28 genotype and irinotecan-induced neutropenia: dose matters. Journal of the National Cancer Institute. 99: 1290-5. PMID 17728214 DOI: 10.1093/jnci/djm115  1
2007 Chi YY, Ibrahim JG, Bissahoyo A, Threadgill DW. Bayesian hierarchical modeling for time course microarray experiments. Biometrics. 63: 496-504. PMID 17688501 DOI: 10.1111/j.1541-0420.2006.00689.x  1
2007 Zhu H, Ibrahim JG, Tang N, Rowe DB, Hao X, Bansal R, Peterson BS. A statistical analysis of brain morphology using wild bootstrapping. Ieee Transactions On Medical Imaging. 26: 954-66. PMID 17649909 DOI: 10.1109/TMI.2007.897396  1
2007 Gelfond JA, Ibrahim JG, Zou F. Proximity model for expression quantitative trait loci (eQTL) detection. Biometrics. 63: 1108-16. PMID 17425636 DOI: 10.1111/j.1541-0420.2007.00778.x  1
2007 Fitzmaurice GM, Lipsitz SR, Ibrahim JG. A note on permutation tests for variance components in multilevel generalized linear mixed models. Biometrics. 63: 942-6. PMID 17403100 DOI: 10.1111/j.1541-0420.2007.00775.x  1
2007 Gupta M, Qu P, Ibrahim JG. A temporal hidden Markov regression model for the analysis of gene regulatory networks. Biostatistics (Oxford, England). 8: 805-20. PMID 17400597 DOI: 10.1093/biostatistics/kxm007  1
2007 Zhu H, Ibrahim JG, Lee S, Zhang H. Perturbation selection and influence measures in local influence analysis Annals of Statistics. 35: 2565-2588. DOI: 10.1214/009053607000000343  1
2007 Zhu H, Zhang H, Ibrahim JG, Peterson BS. Statistical analysis of diffusion tensors in diffusion-weighted magnetic resonance imaging data: Rejoinder Journal of the American Statistical Association. 102: 1110-1113. DOI: 10.1198/016214507000001201  1
2007 Chen Q, Zeng D, Ibrahim JG. Sieve maximum likelihood estimation for regression models with covariates missing at random Journal of the American Statistical Association. 102: 1309-1317. DOI: 10.1198/016214507000001058  1
2007 Zhu H, Zhang H, Ibrahim JG, Peterson BS. Statistical analysis of diffusion tensors in diffusion-weighted magnetic resonance imaging data Journal of the American Statistical Association. 102: 1085-1102. DOI: 10.1198/016214507000000581  1
2007 Gupta M, Ibrahim JG. Variable selection in regression mixture modeling for the discovery of gene regulatory networks Journal of the American Statistical Association. 102: 867-880. DOI: 10.1198/016214507000000068  1
2007 Johnson BA, Herring AH, Ibrahim JG, Siega-Riz AM. Structured measurement error in nutritional epidemiology: Applications in the pregnancy, infection, and nutrition (PIN) study Journal of the American Statistical Association. 102: 856-866. DOI: 10.1198/016214506000000771  1
2007 Chi YY, Ibrahim JG. Bayesian approaches to joint longitudinal and survival models accommodating both zero and nonzero cure fractions Statistica Sinica. 17: 445-462.  1
2006 Chi YY, Ibrahim JG. Joint models for multivariate longitudinal and multivariate survival data. Biometrics. 62: 432-45. PMID 16918907 DOI: 10.1111/j.1541-0420.2005.00448.x  1
2006 Chen Q, Ibrahim JG. Semiparametric models for missing covariate and response data in regression models. Biometrics. 62: 177-84. PMID 16542244 DOI: 10.1111/j.1541-0420.2005.00438.x  1
2006 Fitzmaurice GM, Lipsitz SR, Ibrahim JG, Gelber R, Lipshultz S. Estimation in regression models for longitudinal binary data with outcome-dependent follow-up. Biostatistics (Oxford, England). 7: 469-85. PMID 16428260 DOI: 10.1093/biostatistics/kxj019  1
2006 Parzen M, Lipsitz SR, Fitzmaurice GM, Ibrahim JG, Troxel A. Pseudo-likelihood methods for longitudinal binary data with non-ignorable missing responses and covariates. Statistics in Medicine. 25: 2784-96. PMID 16345018 DOI: 10.1002/sim.2435  1
2006 Zeng D, Yin G, Ibrahim JG. Semiparametric transformation models for survival data with a cure fraction Journal of the American Statistical Association. 101: 670-684. DOI: 10.1198/016214505000001122  1
2006 Morales KH, Ibrahim JG, Chen CJ, Ryan LM. Bayesian model averaging with applications to benchmark dose estimation for arsenic in drinking water Journal of the American Statistical Association. 101: 9-17. DOI: 10.1198/016214505000000961  1
2006 Chen MH, Ibrahim JG, Shao QM. Posterior propriety and computation for the Cox regression model with applications to missing covariates Biometrika. 93: 791-807. DOI: 10.1093/biomet/93.4.791  1
2006 Stubbendick AL, Ibrahim JG. Likelihood-based inference with nonignorable missing responses and covariates in models for discrete longitudinal data Statistica Sinica. 16: 1143-1167.  1
2005 Blanton HL, Radford SJ, McMahan S, Kearney HM, Ibrahim JG, Sekelsky J. REC, Drosophila MCM8, drives formation of meiotic crossovers. Plos Genetics. 1: e40. PMID 16189551 DOI: 10.1371/journal.pgen.0010040  1
2005 Huang L, Chen MH, Ibrahim JG. Bayesian analysis for generalized linear models with nonignorably missing covariates. Biometrics. 61: 767-80. PMID 16135028 DOI: 10.1111/j.1541-0420.2005.00338.x  1
2005 Naskar M, Das K, Ibrahim JG. A semiparametric mixture model for analyzing clustered competing risks data. Biometrics. 61: 729-37. PMID 16135024 DOI: 10.1111/j.1541-0420.2005.00341.x  1
2005 Tadesse MG, Ibrahim JG, Gentleman R, Chiaretti S, Ritz J, Foa R. Bayesian error-in-variable survival model for the analysis of GeneChip arrays. Biometrics. 61: 488-97. PMID 16011696 DOI: 10.1111/j.1541-0420.2005.00313.x  1
2005 Yin G, Ibrahim JG. A general class of Bayesian survival models with zero and nonzero cure fractions. Biometrics. 61: 403-12. PMID 16011686 DOI: 10.1111/j.1541-0420.2005.00329.x  1
2005 Yin G, Ibrahim JG. A class of Bayesian shared gamma frailty models with multivariate failure time data. Biometrics. 61: 208-16. PMID 15737095 DOI: 10.1111/j.0006-341X.2005.030826.x  1
2005 Brown ER, Ibrahim JG, DeGruttola V. A flexible B-spline model for multiple longitudinal biomarkers and survival. Biometrics. 61: 64-73. PMID 15737079 DOI: 10.1111/j.0006-341X.2005.030929.x  1
2005 Tadesse MG, Ibrahim JG, Vannucci M, Gentleman R. Wavelet thresholding with bayesian false discovery rate control. Biometrics. 61: 25-35. PMID 15737075 DOI: 10.1111/j.0006-341X.2005.031102.x  1
2005 Ibrahim JG, Chen MH, Lipsitz SR, Herring AH. Missing-data methods for generalized linear models: A comparative review Journal of the American Statistical Association. 100: 332-346. DOI: 10.1198/016214504000001844  1
2005 Zeng D, Yin G, Ibrahim JG. Inference for a class of transformed hazards models Journal of the American Statistical Association. 100: 1000-1008. DOI: 10.1198/016214504000001637  1
2005 Fitzmaurice GM, Lipsitz SR, Molenberghs G, Ibrahim JG. A protective estimator for longitudinal binary data subject to non-ignorable non-monotone missingness Journal of the Royal Statistical Society. Series a: Statistics in Society. 168: 723-735. DOI: 10.1111/j.1467-985X.2005.00374.x  1
2005 Guosheng Y, Ibrahim JG. Cure rate models: A unified approach Canadian Journal of Statistics. 33: 559-570. DOI: 10.1002/cjs.5550330407  1
2005 Yin G, Ibrahim JG. Bayesian frailty models based on box-cox transformed hazards Statistica Sinica. 15: 781-794.  1
2004 Tadesse MG, Ibrahim JG. A bayesian hierarchical model for the analysis of Affymetrix arrays. Annals of the New York Academy of Sciences. 1020: 41-8. PMID 15208182 DOI: 10.1196/annals.1310.006  1
2004 Chen MH, Ibrahim JG, Shao QM. Propriety of the posterior distribution and existence of the MLE for regression models with covariates missing at random Journal of the American Statistical Association. 99: 421-438. DOI: 10.1198/016214504000000368  1
2004 Chen MH, Dey DK, Ibrahim JG. Bayesian criterion based model assessment for categorical data Biometrika. 91: 45-63. DOI: 10.1093/biomet/91.1.45  1
2004 Herring AH, Ibrahim JG, Lipsitz SR. Non-ignorable missing covariate data in survival analysis: A case-study of an International Breast Cancer Study Group trial Journal of the Royal Statistical Society. Series C: Applied Statistics. 53: 293-310. DOI: 10.1046/j.1467-9876.2003.05168.x  1
2004 Chen MH, Ibrahim JG, Sinha D. A new joint model for longitudinal and survival data with a cure fraction Journal of Multivariate Analysis. 91: 18-34. DOI: 10.1016/j.jmva.2004.04.005  1
2004 Ibrahim JG, Chen MH, Sinha D. Bayesian methods for joint modeling of longitudinal and survival data with applications to cancer vaccine trials Statistica Sinica. 14: 863-883.  1
2003 Stubbendick AL, Ibrahim JG. Maximum likelihood methods for nonignorable missing responses and covariates in random effects models. Biometrics. 59: 1140-50. PMID 14969495 DOI: 10.1111/j.0006-341X.2003.00131.x  1
2003 Brown ER, Ibrahim JG. Bayesian approaches to joint cure-rate and longitudinal models with applications to cancer vaccine trials. Biometrics. 59: 686-93. PMID 14601770 DOI: 10.1111/1541-0420.00079  1
2003 Tadesse MG, Ibrahim JG, Mutter GL. Identification of differentially expressed genes in high-density oligonucleotide arrays accounting for the quantification limits of the technology. Biometrics. 59: 542-54. PMID 14601755 DOI: 10.1111/1541-0420.00064  1
2003 Brown ER, Ibrahim JG. A Bayesian semiparametric joint hierarchical model for longitudinal and survival data. Biometrics. 59: 221-8. PMID 12926706 DOI: 10.1111/1541-0420.00028  1
2003 Tsodikov AD, Ibrahim JG, Yakovlev AY. Estimating Cure Rates from Survival Data: An Alternative to Two-Component Mixture Models Journal of the American Statistical Association. 98: 1063-1078. DOI: 10.1198/01622145030000001007  1
2003 Ibrahim JG, Chen MH, Sinha D. On optimality properties of the power prior Journal of the American Statistical Association. 98: 204-213. DOI: 10.1198/016214503388619229  1
2003 Mezzetti M, Ibrahim JG, Bois FY, Ryan LM, Ngo L, Smith TJ. A Bayesian compartmental model for the evaluation of 1,3-butadiene metabolism Journal of the Royal Statistical Society. Series C: Applied Statistics. 52: 291-305. DOI: 10.1111/1467-9876.00405  1
2003 Sinha D, Ibrahim JG, Chen MH. A Bayesian justification of Cox's partial likelihood Biometrika. 90: 629-641. DOI: 10.1093/biomet/90.3.629  1
2003 Chen MH, Ibrahim JG, Shao QM, Weiss RE. Prior elicitation for model selection an estimation in generalized linear mixed models Journal of Statistical Planning and Inference. 111: 57-76. DOI: 10.1016/S0378-3758(02)00285-9  1
2003 Chen MH, Ibrahim JG. Conjugate priors for generalized linear models Statistica Sinica. 13: 461-476.  1
2002 French JL, Ibrahim JG. Bayesian methods for a three-state model for rodent carcinogenicity studies. Biometrics. 58: 906-16. PMID 12495145  1
2002 Lipsitz SR, Fitzmaurice GM, Ibrahim JG, Gelber R, Lipshultz S. Parameter estimation in longitudinal studies with outcome-dependent follow-up. Biometrics. 58: 621-30. PMID 12229997  1
2002 Parzen M, Lipsitz SR, Ibrahim JG, Lipshultz S. A weighted estimating equation for linear regression with missing covariate data. Statistics in Medicine. 21: 2421-36. PMID 12210626 DOI: 10.1002/sim.1195  1
2002 Chen MH, Ibrahim JG, Lipsitz SR. Bayesian methods for missing covariates in cure rate models. Lifetime Data Analysis. 8: 117-46. PMID 12048863 DOI: 10.1023/A:1014835522957  1
2002 Kirkwood JM, Ibrahim JG, Sondak VK, Ernstoff MS, Ross M. Interferon alfa-2a for melanoma metastases. Lancet (London, England). 359: 978-9. PMID 11918944 DOI: 10.1016/S0140-6736(02)08001-7  1
2002 Herring AH, Ibrahim JG, Lipsitz SR. Frailty models with missing covariates. Biometrics. 58: 98-109. PMID 11890332  1
2002 Ibrahim JG, Chen MH, Gray RJ. Bayesian models for gene expression with DNA microarray data Journal of the American Statistical Association. 97: 88-99. DOI: 10.1198/016214502753479257  1
2002 Chen MH, Harrington DP, Ibrahim JG. Bayesian cure rate models for malignant melanoma: A case-study of Eastern Cooperative Oncology Group trial E1690 Journal of the Royal Statistical Society. Series C: Applied Statistics. 51: 135-150. DOI: 10.1111/1467-9876.00259  1
2002 Sinha D, Ibrahim JG, Chen MH. Models for survival data from cancer prevention studies Journal of the Royal Statistical Society. Series B: Statistical Methodology. 64: 467-477. DOI: 10.1111/1467-9868.00345  1
2002 Chen MH, Ibrahim JG, Sinha D. Bayesian inference for multivariate survival data with a cure fraction Journal of Multivariate Analysis. 80: 101-126. DOI: 10.1006/jmva.2000.1975  1
2002 Ibrahim JG, Chen MH, Lipsitz SR. Bayesian methods for generalized linear models with covariates missing at random Canadian Journal of Statistics. 30: 55-78.  1
2001 Ibrahim JG, Chen MH, Sinha D. Bayesian semiparametric models for survival data with a cure fraction Biometrics. 57: 383-388. PMID 11414560  1
2001 Chen MH, Ibrahim JG. Maximum likelihood methods for cure rate models with missing covariates Biometrics. 57: 43-52. PMID 11252617  1
2001 Fitzmaurice GM, Lipsitz SR, Molenberghs G, Ibrahim JG. Bias in estimating association parameters for longitudinal binary responses with drop-outs Biometrics. 57: 15-21. PMID 11252590  1
2001 Legedza ATR, Ibrahim JG. Heterogeneity in phase I clinical trials: Prior elicitation and computation using the continual reassessment method Statistics in Medicine. 20: 867-882. PMID 11252009 DOI: 10.1002/sim.701  1
2001 Ibrahim JG, Chen MH, Sinha D. Criterion-based methods for Bayesian model assessment Statistica Sinica. 11: 419-443.  1
2001 Herring AH, Ibrahim JG. Likelihood-Based Methods for Missing Covariates in the Cox Proportional Hazards Model Journal of the American Statistical Association. 96: 292-302.  1
2001 Ibrahim JG, Lipsitz SR, Norton N. Using auxiliary data for parameter estimation with non-ignorably missing outcomes Journal of the Royal Statistical Society. Series C: Applied Statistics. 50: 361-373.  1
2001 Leong T, Lipsitz SR, Ibrahim JG. Incomplete covariates in the Cox model with applications to biological marker data Journal of the Royal Statistical Society. Series C: Applied Statistics. 50: 467-484.  1
2001 Ibrahim JG, Chen MH, Lipsitz SR. Missing responses in generalised linear mixed models when the missing data mechanism is nonignorable Biometrika. 88: 551-564.  1
2000 Kim SW, Ibrahim JG. On Bayesian Inference for Proportional Hazards Models Using Noninformative Priors Lifetime Data Analysis. 6: 331-341. PMID 11190603  1
2000 Legedza ATR, Ibrahim JG. Longitudinal design for phase I clinical trials using the Continual Reassessment Method Controlled Clinical Trials. 21: 574-588. PMID 11146151 DOI: 10.1016/S0197-2456(00)00091-X  1
2000 Frank DA, Meuse J, Hirsch D, Ibrahim JG, Van Den Abbeele AD. The treatment and outcome of cancer patients with thromboses on central venous catheters Journal of Thrombosis and Thrombolysis. 10: 271-275. PMID 11122548 DOI: 10.1023/A:1026503526188  1
2000 Bernardo MVP, Ibrahim JG. Group sequential designs for cure rate models with early stopping in favour of the null hypothesis Statistics in Medicine. 19: 3023-3035. PMID 11113940 DOI: 10.1002/1097-0258(20001130)19:22<3023::AID-SIM638>3.0.CO;2-X  1
2000 Chen MH, Ibrahim JG. Bayesian predictive inference for time series count data Biometrics. 56: 678-685. PMID 10985202  1
2000 Ibrahim JG, Chen MH. Power Prior Distributions for Regression Models Statistical Science. 15: 46-60.  1
2000 Kim SW, Ibrahim JG. Default Bayes factors for generalized linear models Journal of Statistical Planning and Inference. 87: 301-315.  1
2000 Klar N, Lipsitz SR, Ibrahim JG. An estimating equations approach for modelling kappa Biometrical Journal. 42: 45-58.  1
2000 Ibrahim JG, Chen MH, Ryan LM. Bayesian Variable Selection for Time Series Count Data Statistica Sinica. 10: 971-987.  1
2000 Chen MH, Ibrahim JG, Shao QM. Power prior distributions for generalized linear models Journal of Statistical Planning and Inference. 84: 121-137.  1
1999 Ibrahim JG, Chen MH, Lipsitz SR. Monte carlo EM for missing covariates in parametric regression models Biometrics. 55: 591-596. PMID 11318219  1
1999 Lipsitz SR, Ibrahim JG, Fitzmaurice GM. Likelihood methods for incomplete longitudinal binary responses with incomplete categorical covariates Biometrics. 55: 214-223. PMID 11318157  1
1999 Lipsitz SR, Ibrahim JG, Chen MH, Peterson H. Non-ignorable missing covariates in generalized linear models Statistics in Medicine. 18: 2435-2448. PMID 10474151  1
1999 Leong T, Lipsitz SR, Ibrahim JG. Using missing data methods in genetic studies with missing mutation status Statistics in Medicine. 18: 473-485. PMID 10070687 DOI: 10.1002/(SICI)1097-0258(19990228)18:4<473::AID-SIM21>3.0.CO;2-H  1
1999 Chen MH, Ibrahim JG, Yiannoutsos C. Prior elicitation, variable selection and Bayesian computation for logistic regression models Journal of the Royal Statistical Society. Series B: Statistical Methodology. 61: 223-242.  1
1999 Lipsitz SR, Ibrahim JG, Parzen M. A degrees-of-freedom approximation for a t-statistic with heterogeneous variance Journal of the Royal Statistical Society Series D: the Statistician. 48: 495-506.  1
1999 Lipsitz SR, Ibrahim JG, Zhao LP. A Weighted Estimating Equation for Missing Covariate Data with Properties Similar to Maximum Likelihood Journal of the American Statistical Association. 94: 1147-1160.  1
1999 Ibrahim JG, Lipsitz SR, Chen MH. Missing covariates in generalized linear models when the missing data mechanism is non-ignorable Journal of the Royal Statistical Society. Series B: Statistical Methodology. 61: 173-190.  1
1999 Chen MH, Ibrahim JG, Sinha D. A New Bayesian Model for Survival Data with a Surviving Fraction Journal of the American Statistical Association. 94: 909-919.  1
1999 Ibrahim JG, Chen MH, MacEachern SN. Bayesian variable selection for proportional hazards models Canadian Journal of Statistics. 27: 701-717.  1
1998 Kleinman KP, Ibrahim JG. A semi-parametric Bayesian approach to generalized linear mixed models Statistics in Medicine. 17: 2579-2596. PMID 9839349 DOI: 10.1002/(SICI)1097-0258(19981130)17:22<2579::AID-SIM948>3.0.CO;2-P  1
1998 Lipsitz SR, Ibrahim JG. Estimating equations with incomplete categorical covariates in the Cox model Biometrics. 54: 1002-1013. PMID 9750248 DOI: 10.2307/2533852  1
1998 Kleinman KP, Ibrahim JG. A semiparametric Bayesian approach to the random effects model Biometrics. 54: 921-938. PMID 9750242 DOI: 10.2307/2533846  1
1998 Kleinman KP, Ibrahim JG, Laird NM. A Bayesian framework for intent-to-treat analysis with missing data Biometrics. 54: 265-278. PMID 9544521 DOI: 10.2307/2534013  1
1998 Hoeting JA, Ibrahim JG. Bayesian predictive simultaneous variable and transformation selection in the linear model Computational Statistics and Data Analysis. 28: 87-103.  1
1998 Ibrahim JG, Ryan LM, Chen MH. Using historical controls to adjust for covariates in trend tests for binary data Journal of the American Statistical Association. 93: 1282-1293.  1
1997 Ewell M, Ibrahim JG. The Large Sample Distribution of the Weighted Log Rank Statistic under General Local Alternatives Lifetime Data Analysis. 3: 5-12. PMID 9384622  1
1997 Glencross PM, Weinberg JM, Ibrahim JG, Christiani DC. Loss of lung function among sheet metal workers: Ten-year study American Journal of Industrial Medicine. 32: 460-466. PMID 9327069 DOI: 10.1002/(SICI)1097-0274(199711)32:5<460::AID-AJIM5>3.0.CO;2-W  1
1997 Weiss RE, Wang Y, Ibrahim JG. Predictive model selection for repeated measures random effects models using Bayes factors Biometrics. 53: 592-602. PMID 9192454 DOI: 10.2307/2533960  1
1997 Ibrahim JG, Chen MH. Predictive variable selection for the multivariate linear model Biometrics. 53: 465-478. PMID 9192446 DOI: 10.2307/2533950  1
1997 Ibrahim JG. On Properties of Predictive Priors in Linear Models American Statistician. 51: 333-337.  1
1996 Lipsitz SR, Ibrahim JG. Using the EM-Algorithm for Survival Data with Incomplete Categorical Covariates Lifetime Data Analysis. 2: 5-14. PMID 9384645  1
1996 Ibrahim JG, Ryan LM. Use of historical controls in time-adjusted trend tests for carcinogenicity Biometrics. 52: 1478-1485. PMID 8962464 DOI: 10.2307/2532862  1
1996 Ibrahim JG, Lipsitz SR. Parameter estimation from incomplete data in binomial regression when the missing data mechanism is nonignorable Biometrics. 52: 1071-1078. PMID 8805768  1
1996 Laud PW, Ibrahim JG. Predictive specification of prior model probabilities in variable selection Biometrika. 83: 267-274.  1
1996 Lipsitz SR, Ibrahim JG. A conditional model for incomplete covariates in parametric regression models Biometrika. 83: 916-922.  1
1994 Ibrahim JG, Laud PW. A predictive approach to the analysis of designed experiments Journal of the American Statistical Association. 89: 309-319. DOI: 10.1080/01621459.1994.10476472  1
1991 Boult C, Kane RL, Louis TA, Ibrahim JG. Forecasting the number of future disabled elderly using Markovian and mathematical models Journal of Clinical Epidemiology. 44: 973-980. PMID 1832442 DOI: 10.1016/0895-4356(91)90068-K  1
1991 Ibrahim JG, Laud PW. On bayesian analysis of generalized linear models using jeffreys’s prior Journal of the American Statistical Association. 86: 981-986. DOI: 10.1080/01621459.1991.10475141  1
1990 Ibrahim JG. Incomplete data in generalized linear models Journal of the American Statistical Association. 85: 765-769. DOI: 10.1080/01621459.1990.10474938  1
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