| Year |
Citation |
Score |
| 2023 |
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J, Radojević M, Zhao T, Cheng L, Qu L, Liu S, ... ... Roysam B, et al. BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets. Nature Methods. PMID 37069271 DOI: 10.1038/s41592-023-01848-5 |
0.396 |
|
| 2019 |
Liadi I, Singh H, Romain G, Roysam B, Cooper LJ, Varadarajan N. Defining potency of CAR T cells: Fast and furious or slow and steady. Oncoimmunology. 8: e1051298. PMID 31646063 DOI: 10.1080/2162402X.2015.1051298 |
0.3 |
|
| 2018 |
Lu H, Li J, Martinez Paniagua MA, Bandey IN, Amritkar A, Singh H, Mayerich D, Varadarajan N, Roysam B. TIMING 2.0: High-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell grids. Bioinformatics (Oxford, England). PMID 30084956 DOI: 10.1093/Bioinformatics/Bty676 |
0.408 |
|
| 2017 |
Megjhani M, Correa de Sampaio P, Leigh Carstens J, Kalluri R, Roysam B. Morphologically Constrained Spectral Unmixing by Dictionary Learning for Multiplex Fluorescence Microscopy. Bioinformatics (Oxford, England). PMID 28334208 DOI: 10.1093/Bioinformatics/Btx108 |
0.333 |
|
| 2016 |
Xu Y, Megjhani M, Trett K, Shain W, Roysam B, Han Z. Unsupervised Profiling of Microglial Arbor Morphologies and Distribution Using a Nonparametric Bayesian Approach Ieee Journal On Selected Topics in Signal Processing. 10: 115-129. DOI: 10.1109/Jstsp.2015.2505660 |
0.347 |
|
| 2015 |
Xu Y, Qiu P, Roysam B. Unsupervised Discovery of Subspace Trends. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 2131-45. PMID 26353189 DOI: 10.1109/Tpami.2015.2394475 |
0.36 |
|
| 2015 |
Merouane A, Rey-Villamizar N, Lu Y, Liadi I, Romain G, Lu J, Singh H, Cooper LJ, Varadarajan N, Roysam B. Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING). Bioinformatics (Oxford, England). PMID 26059718 DOI: 10.1093/Bioinformatics/Btv355 |
0.398 |
|
| 2015 |
Kulkarni PM, Barton E, Savelonas M, Padmanabhan R, Lu Y, Trett K, Shain W, Leasure JL, Roysam B. Quantitative 3-D analysis of GFAP labeled astrocytes from fluorescence confocal images. Journal of Neuroscience Methods. 246: 38-51. PMID 25745860 DOI: 10.1016/J.Jneumeth.2015.02.014 |
0.375 |
|
| 2015 |
Megjhani M, Rey-Villamizar N, Merouane A, Lu Y, Mukherjee A, Trett K, Chong P, Harris C, Shain W, Roysam B. Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors. Bioinformatics (Oxford, England). 31: 2190-8. PMID 25701570 DOI: 10.1093/Bioinformatics/Btv109 |
0.499 |
|
| 2015 |
Kulkarni PM, Rey-Villamizar N, Merouane A, Sudheendran N, Wang S, Garcia M, Larina IV, Roysam B, Larin KV. Algorithms for improved 3-D reconstruction of live mammalian embryo vasculature from optical coherence tomography data. Quantitative Imaging in Medicine and Surgery. 5: 125-35. PMID 25694962 DOI: 10.3978/J.Issn.2223-4292.2014.11.33 |
0.377 |
|
| 2015 |
Lu Y, Carin L, Coifman R, Shain W, Roysam B. Quantitative arbor analytics: unsupervised harmonic co-clustering of populations of brain cell arbors based on L-measure. Neuroinformatics. 13: 47-63. PMID 25086878 DOI: 10.1007/S12021-014-9237-2 |
0.406 |
|
| 2014 |
Rey-Villamizar N, Somasundar V, Megjhani M, Xu Y, Lu Y, Padmanabhan R, Trett K, Shain W, Roysam B. Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python. Frontiers in Neuroinformatics. 8: 39. PMID 24808857 DOI: 10.3389/Fninf.2014.00039 |
0.403 |
|
| 2014 |
Padmanabhan RK, Somasundar VH, Griffith SD, Zhu J, Samoyedny D, Tan KS, Hu J, Liao X, Carin L, Yoon SS, Flaherty KT, Dipaola RS, Heitjan DF, Lal P, Feldman MD, ... Roysam B, et al. An active learning approach for rapid characterization of endothelial cells in human tumors. Plos One. 9: e90495. PMID 24603893 DOI: 10.1371/Journal.Pone.0090495 |
0.357 |
|
| 2013 |
Peng H, Roysam B, Ascoli GA. Automated image computing reshapes computational neuroscience. Bmc Bioinformatics. 14: 293. PMID 24090217 DOI: 10.1186/1471-2105-14-293 |
0.367 |
|
| 2013 |
Isse K, Lesniak A, Grama K, Maier J, Specht S, Castillo-Rama M, Lunz J, Roysam B, Michalopoulos G, Demetris AJ. Preexisting epithelial diversity in normal human livers: a tissue-tethered cytometric analysis in portal/periportal epithelial cells. Hepatology (Baltimore, Md.). 57: 1632-43. PMID 23150208 DOI: 10.1002/Hep.26131 |
0.336 |
|
| 2013 |
Xu Y, Savelonas M, Qiu P, Trett K, Shain W, Roysam B. Unsupervised inference of arbor morphology progression for microglia from confocal microscope images Proceedings - International Symposium On Biomedical Imaging. 1356-1359. DOI: 10.1109/ISBI.2013.6556784 |
0.4 |
|
| 2012 |
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. Biological imaging software tools. Nature Methods. 9: 697-710. PMID 22743775 DOI: 10.1038/Nmeth.2084 |
0.429 |
|
| 2012 |
Mayerich D, Bjornsson C, Taylor J, Roysam B. NetMets: software for quantifying and visualizing errors in biological network segmentation. Bmc Bioinformatics. 13: S7. PMID 22607549 DOI: 10.1186/1471-2105-13-S8-S7 |
0.381 |
|
| 2012 |
Winter MR, Fang C, Banker G, Roysam B, Cohen AR. Axonal transport analysis using Multitemporal Association Tracking. International Journal of Computational Biology and Drug Design. 5: 35-48. PMID 22436297 DOI: 10.1504/Ijcbdd.2012.045950 |
0.333 |
|
| 2012 |
Isse K, Lesniak A, Grama K, Roysam B, Minervini MI, Demetris AJ. Digital transplantation pathology: Combining whole slide imaging, multiplex staining and automated image analysis American Journal of Transplantation. 12: 27-37. PMID 22053785 DOI: 10.1111/J.1600-6143.2011.03797.X |
0.425 |
|
| 2012 |
Dorado-Muñoz LP, Vélez-Reyes M, Mukherjee A, Roysam B. A vector SIFT detector for interest point detection in hyperspectral imagery Ieee Transactions On Geoscience and Remote Sensing. 50: 4521-4533. DOI: 10.1109/Tgrs.2012.2191791 |
0.688 |
|
| 2012 |
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. Erratum: Corrigendum: Biological imaging software tools Nature Methods. 9: 1031-1031. DOI: 10.1038/Nmeth1012-1031B |
0.422 |
|
| 2012 |
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurmann N, Swedlow JR, Tomancak P, Carpenter AE. Erratum: Corrigendum: Biological imaging software tools Nature Methods. 9: 1031-1031. DOI: 10.1038/Nmeth1012-1031A |
0.34 |
|
| 2012 |
Narayanaswamy A, Merouane A, Peixoto A, Ladi E, Herzmark P, Von Andrian U, Robey E, Roysam B. Multi-temporal globally-optimal dense 3-D cell segmentation and tracking from multi-photon time-lapse movies of live tissue microenvironments Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7570: 147-162. DOI: 10.1007/978-3-642-33555-6_13 |
0.612 |
|
| 2011 |
Winter M, Wait E, Roysam B, Goderie SK, Ali RA, Kokovay E, Temple S, Cohen AR. Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing. Nature Protocols. 6: 1942-52. PMID 22094730 DOI: 10.1038/Nprot.2011.422 |
0.445 |
|
| 2011 |
Al-Kofahi Y, Lassoued W, Grama K, Nath SK, Zhu J, Oueslati R, Feldman M, Lee WM, Roysam B. Cell-based quantification of molecular biomarkers in histopathology specimens. Histopathology. 59: 40-54. PMID 21771025 DOI: 10.1111/J.1365-2559.2011.03878.X |
0.765 |
|
| 2011 |
Narayanaswamy A, Wang Y, Roysam B. 3-D image pre-processing algorithms for improved automated tracing of neuronal arbors. Neuroinformatics. 9: 219-31. PMID 21537877 DOI: 10.1007/S12021-011-9116-Z |
0.733 |
|
| 2011 |
Luisi J, Narayanaswamy A, Galbreath Z, Roysam B. The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions. Neuroinformatics. 9: 305-15. PMID 21487683 DOI: 10.1007/S12021-011-9115-0 |
0.595 |
|
| 2011 |
Wang Y, Narayanaswamy A, Tsai CL, Roysam B. A broadly applicable 3-D neuron tracing method based on open-curve snake. Neuroinformatics. 9: 193-217. PMID 21399937 DOI: 10.1007/S12021-011-9110-5 |
0.77 |
|
| 2011 |
Tsai CL, Lister JP, Bjornsson CS, Smith K, Shain W, Barnes CA, Roysam B. Robust, globally consistent and fully automatic multi-image registration and montage synthesis for 3-D multi-channel images. Journal of Microscopy. 243: 154-71. PMID 21361958 DOI: 10.1111/J.1365-2818.2011.03489.X |
0.699 |
|
| 2011 |
Mukherjee A, Jenkins B, Fang C, Radke RJ, Banker G, Roysam B. Automated kymograph analysis for profiling axonal transport of secretory granules. Medical Image Analysis. 15: 354-67. PMID 21330183 DOI: 10.1016/J.Media.2010.12.005 |
0.606 |
|
| 2011 |
Padfield D, Rittscher J, Roysam B. Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis. Medical Image Analysis. 15: 650-68. PMID 20864383 DOI: 10.1016/J.Media.2010.07.006 |
0.776 |
|
| 2011 |
Padfield D, Rittscher J, Roysam B. Quantitative biological studies enabled by robust cell tracking Proceedings - International Symposium On Biomedical Imaging. 1929-1934. DOI: 10.1109/ISBI.2011.5872787 |
0.744 |
|
| 2011 |
Wang Y, Narayanaswamy A, Roysam B. Novel 4-d open-curve active contour and curve completion approach for automated tree structure extraction Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1105-1112. DOI: 10.1109/CVPR.2011.5995620 |
0.599 |
|
| 2011 |
Wang Y, Roysam B. Deformable Model Based 3-D Neuron Tracing and Reconstruction from Microscope Images and Software System with Parallel GPU Implementation Microscopy and Microanalysis. 17: 144-145. DOI: 10.1017/S1431927611001590 |
0.431 |
|
| 2010 |
Isse K, Grama K, Abbott IM, Lesniak A, Lunz JG, Lee WM, Specht S, Corbitt N, Mizuguchi Y, Roysam B, Demetris AJ. Adding value to liver (and allograft) biopsy evaluation using a combination of multiplex quantum dot immunostaining, high-resolution whole-slide digital imaging, and automated image analysis. Clinics in Liver Disease. 14: 669-85. PMID 21055689 DOI: 10.1016/J.Cld.2010.07.004 |
0.413 |
|
| 2010 |
Seggio AM, Narayanaswamy A, Roysam B, Thompson DM. Self-aligned Schwann cell monolayers demonstrate an inherent ability to direct neurite outgrowth. Journal of Neural Engineering. 7: 046001. PMID 20489238 DOI: 10.1088/1741-2560/7/4/046001 |
0.598 |
|
| 2010 |
Narayanaswamy A, Dwarakapuram S, Bjornsson CS, Cutler BM, Shain W, Roysam B. Robust adaptive 3-D segmentation of vessel laminae from fluorescence confocal microscope images and parallel GPU implementation. Ieee Transactions On Medical Imaging. 29: 583-97. PMID 20199906 DOI: 10.1017/S1431927608086947 |
0.68 |
|
| 2010 |
Cohen AR, Gomes FL, Roysam B, Cayouette M. Computational prediction of neural progenitor cell fates. Nature Methods. 7: 213-8. PMID 20139969 DOI: 10.1038/Nmeth.1424 |
0.33 |
|
| 2010 |
Al-Kofahi Y, Lassoued W, Lee W, Roysam B. Improved automatic detection and segmentation of cell nuclei in histopathology images. Ieee Transactions On Bio-Medical Engineering. 57: 841-52. PMID 19884070 DOI: 10.1109/Tbme.2009.2035102 |
0.812 |
|
| 2010 |
Xiao L, Huang LL, Roysam B. Image variational denoising using gradient fidelity on curvelet shrinkage Eurasip Journal On Advances in Signal Processing. 2010. DOI: 10.1155/2010/398410 |
0.492 |
|
| 2010 |
Dorado-Muñoz LP, Velez-Reyes M, Mukherjee A, Roysam B. A vector SIFT operator for interest point detection in hyperspectral imagery 2nd Workshop On Hyperspectral Image and Signal Processing: Evolution in Remote Sensing, Whispers 2010 - Workshop Program. DOI: 10.1109/WHISPERS.2010.5594965 |
0.381 |
|
| 2010 |
Gurcan MN, Roysam B, Dhawan AP, Wang LV. Guest Editorial to the Special Letters Issue on Emerging Technologies in Multiparameter Biomedical Optical Imaging and Image Analysis Ieee Transactions On Biomedical Engineering. 57: 2551-2554. DOI: 10.1109/Tbme.2010.2072750 |
0.391 |
|
| 2010 |
Narayanaswamy A, Ladi E, Al-Kofahi Y, Chen Y, Carothers C, Robey E, Roysam B. 5-D imaging and parallel automated analysis of cellular events in living immune tissue microenvironments 2010 7th Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Isbi 2010 - Proceedings. 1435-1438. DOI: 10.1109/ISBI.2010.5490269 |
0.818 |
|
| 2010 |
Xiao L, Yuan X, Galbreath Z, Roysam B. Automatic and reliable extraction of dendrite backbone from optical microscopy images Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6330: 100-112. DOI: 10.1007/978-3-642-15615-1_13 |
0.625 |
|
| 2009 |
Yuan X, Trachtenberg JT, Potter SM, Roysam B. MDL constrained 3-D grayscale skeletonization algorithm for automated extraction of dendrites and spines from fluorescence confocal images. Neuroinformatics. 7: 213-32. PMID 20012509 DOI: 10.1007/S12021-009-9057-Y |
0.684 |
|
| 2009 |
Padfield D, Rittscher J, Roysam B. Coupled minimum-cost flow cell tracking. Information Processing in Medical Imaging : Proceedings of the ... Conference. 21: 374-85. PMID 19694278 |
0.735 |
|
| 2009 |
Cohen AR, Bjornsson CS, Temple S, Banker G, Roysam B. Automatic summarization of changes in biological image sequences using algorithmic information theory. Ieee Transactions On Pattern Analysis and Machine Intelligence. 31: 1386-403. PMID 19542574 DOI: 10.1109/Tpami.2008.162 |
0.445 |
|
| 2009 |
Chen Y, Ladi E, Herzmark P, Robey E, Roysam B. Automated 5-D analysis of cell migration and interaction in the thymic cortex from time-lapse sequences of 3-D multi-channel multi-photon images. Journal of Immunological Methods. 340: 65-80. PMID 18992251 DOI: 10.1016/J.Jim.2008.09.024 |
0.45 |
|
| 2009 |
Padfield D, Rittscher J, Thomas N, Roysam B. Spatio-temporal cell cycle phase analysis using level sets and fast marching methods. Medical Image Analysis. 13: 143-55. PMID 18752984 DOI: 10.1016/J.Media.2008.06.018 |
0.749 |
|
| 2009 |
Tasimi K, Intes X, Roysam B. Unmixing multiple markers using spectral lifetime measurements Proceedings of Spie - the International Society For Optical Engineering. 7171. DOI: 10.1117/12.822555 |
0.339 |
|
| 2009 |
Dorado-Munoz LP, V́elez-Reyes M, Roysam B, Mukherjee A. Interest point detection for hyperspectral imagery Proceedings of Spie - the International Society For Optical Engineering. 7334. DOI: 10.1117/12.819487 |
0.676 |
|
| 2009 |
Mukherjee A, Velez-Reyes M, Roysam B. Interest points for hyperspectral image data Ieee Transactions On Geoscience and Remote Sensing. 47: 748-760. DOI: 10.1109/Tgrs.2008.2011280 |
0.63 |
|
| 2009 |
Mukherjee A, Cohen A, Roysam B, Jenkins B, Fang C, Petrie SK, Banker G. Automated methods for profiling the axonal transport of secretory bdnf granules in live cultured neurons from time-lapse microscopy data Microscopy and Microanalysis. 15: 832-833. DOI: 10.1017/S1431927609096809 |
0.472 |
|
| 2008 |
Shen Q, Wang Y, Kokovay E, Lin G, Chuang SM, Goderie SK, Roysam B, Temple S. Adult SVZ stem cells lie in a vascular niche: a quantitative analysis of niche cell-cell interactions. Cell Stem Cell. 3: 289-300. PMID 18786416 DOI: 10.1016/J.Stem.2008.07.026 |
0.305 |
|
| 2008 |
Narasimha-Iyer H, Mahadevan V, Beach JM, Roysam B. Improved detection of the central reflex in retinal vessels using a generalized dual-gaussian model and robust hypothesis testing. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 12: 406-10. PMID 18693508 DOI: 10.1109/TITB.2007.897782 |
0.824 |
|
| 2008 |
Tsai CL, Madore B, Leotta MJ, Sofka M, Yang G, Majerovics A, Tanenbaum HL, Stewart CV, Roysam B. Automated retinal image analysis over the internet. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 12: 480-7. PMID 18632328 DOI: 10.1109/TITB.2007.908790 |
0.59 |
|
| 2008 |
Jun SB, Hynd MR, Dowell-Mesfin NM, Al-Kofahi Y, Roysam B, Shain W, Kim SJ. Modulation of cultured neural networks using neurotrophin release from hydrogel-coated microelectrode arrays. Journal of Neural Engineering. 5: 203-13. PMID 18477815 DOI: 10.1088/1741-2560/5/2/011 |
0.722 |
|
| 2008 |
Bjornsson CS, Lin G, Al-Kofahi Y, Narayanaswamy A, Smith KL, Shain W, Roysam B. Associative image analysis: a method for automated quantification of 3D multi-parameter images of brain tissue. Journal of Neuroscience Methods. 170: 165-78. PMID 18294697 DOI: 10.1016/J.Jneumeth.2007.12.024 |
0.842 |
|
| 2008 |
Al-Kofahi Y, Dowell-Mesfin N, Pace C, Shain W, Turner JN, Roysam B. Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 73: 36-43. PMID 18067123 DOI: 10.1002/Cyto.A.20499 |
0.796 |
|
| 2008 |
Cohen AR, Bjornsson C, Chen Y, Banker G, Ladi E, Robey E, Temple S, Roysam B. Automatic summarization of changes in image sequences using algorithmic information theory 2008 5th Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Proceedings, Isbi. 859-862. DOI: 10.1109/ISBI.2008.4541132 |
0.301 |
|
| 2008 |
Padfield D, Rittscher J, Roysam B. Spatio-temporal cell segmentation and tracking for automated screening 2008 5th Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Proceedings, Isbi. 376-379. DOI: 10.1109/ISBI.2008.4541011 |
0.753 |
|
| 2008 |
Padfield D, Rittscher J, Roysam B. Methods for monitoring cellular motion and function Conference Record - Asilomar Conference On Signals, Systems and Computers. 47-50. DOI: 10.1109/ACSSC.2008.5074358 |
0.76 |
|
| 2008 |
Roysam B, Shain W, Robey E, Chen Y, Narayanaswamy A, Tsai CL, Al-Kofahi Y, Bjornsson C, Ladi E, Herzmark P. The FARSIGHT project: Associative 4D/5D image analysis methods for quantifying complex and dynamic biological microenvironments Microscopy and Microanalysis. 14: 60-61. DOI: 10.1017/S1431927608087059 |
0.802 |
|
| 2008 |
Narayanaswamy A, Dwarakapuram S, Bjornsson C, Cutler BM, Shain W, Roysam B. Robust adaptive 3-D segmentation of vessel laminae from fluorescence confocal microscope images & parallel GPU implementation Microscopy and Microanalysis. 14: 726-727. DOI: 10.1017/S1431927608086947 |
0.651 |
|
| 2007 |
Roussel N, Morton CA, Finger FP, Roysam B. A computational model for C. elegans locomotory behavior: application to multiworm tracking. Ieee Transactions On Bio-Medical Engineering. 54: 1786-97. PMID 17926677 DOI: 10.1109/Tbme.2007.894981 |
0.584 |
|
| 2007 |
Narasimha-Iyer H, Can A, Roysam B, Tanenbaum HL, Majerovics A. Integrated analysis of vascular and nonvascular changes from color retinal fundus image sequences. Ieee Transactions On Bio-Medical Engineering. 54: 1436-45. PMID 17694864 DOI: 10.1109/Tbme.2007.900807 |
0.829 |
|
| 2007 |
Narasimha-Iyer H, Beach JM, Khoobehi B, Roysam B. Automatic identification of retinal arteries and veins from dual-wavelength images using structural and functional features. Ieee Transactions On Bio-Medical Engineering. 54: 1427-35. PMID 17694863 DOI: 10.1109/Tbme.2007.900804 |
0.817 |
|
| 2007 |
Lin G, Chawla MK, Olson K, Barnes CA, Guzowski JF, Bjornsson C, Shain W, Roysam B. A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscope images. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 71: 724-36. PMID 17654650 DOI: 10.1002/Cyto.A.20430 |
0.448 |
|
| 2007 |
Tyrrell JA, di Tomaso E, Fuja D, Tong R, Kozak K, Jain RK, Roysam B. Robust 3-D modeling of vasculature imagery using superellipsoids. Ieee Transactions On Medical Imaging. 26: 223-37. PMID 17304736 DOI: 10.1109/Tmi.2006.889722 |
0.746 |
|
| 2007 |
Sutherland VL, Timlin JA, Nieman LT, Guzowski JF, Chawla MK, Worley PF, Roysam B, McNaughton BL, Sinclair MB, Barnes CA. Advanced imaging of multiple mRNAs in brain tissue using a custom hyperspectral imager and multivariate curve resolution. Journal of Neuroscience Methods. 160: 144-8. PMID 17049619 DOI: 10.1016/J.Jneumeth.2006.08.018 |
0.342 |
|
| 2007 |
Lin G, Al Kofahi Y, Tyrrell JA, Bjornsson C, Shain W, Roysam B. Automated 3-D quantification of brain tissue at the cellular scale from multi-parameter confocal microscopy images 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 1040-1043. DOI: 10.1109/ISBI.2007.357033 |
0.72 |
|
| 2006 |
Narasimha-Iyer H, Can A, Roysam B, Stern J. Automated change analysis from fluorescein angiograms for monitoring wet macular degeneration. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 4714-7. PMID 17947113 DOI: 10.1109/IEMBS.2006.259738 |
0.807 |
|
| 2006 |
Bjornsson CS, Oh SJ, Al-Kofahi YA, Lim YJ, Smith KL, Turner JN, De S, Roysam B, Shain W, Kim SJ. Effects of insertion conditions on tissue strain and vascular damage during neuroprosthetic device insertion. Journal of Neural Engineering. 3: 196-207. PMID 16921203 DOI: 10.1088/1741-2560/3/3/002 |
0.738 |
|
| 2006 |
Al-Kofahi O, Radke RJ, Roysam B, Banker G. Automated semantic analysis of changes in image sequences of neurons in culture. Ieee Transactions On Bio-Medical Engineering. 53: 1109-23. PMID 16761838 DOI: 10.1109/Tbme.2006.873565 |
0.794 |
|
| 2006 |
Narasimha-Iyer H, Can A, Roysam B, Stewart CV, Tanenbaum HL, Majerovics A, Singh H. Robust detection and classification of longitudinal changes in color retinal fundus images for monitoring diabetic retinopathy. Ieee Transactions On Bio-Medical Engineering. 53: 1084-98. PMID 16761836 DOI: 10.1109/Tbme.2005.863971 |
0.814 |
|
| 2006 |
Al-Kofahi O, Radke RJ, Goderie SK, Shen Q, Temple S, Roysam B. Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells. Cell Cycle (Georgetown, Tex.). 5: 327-35. PMID 16434878 DOI: 10.4161/Cc.5.3.2426 |
0.758 |
|
| 2006 |
Ortiz-Rivera V, Vélez-Reyes M, Roysam B. Change detection in hyperspectral imagery using temporal principal components Proceedings of Spie - the International Society For Optical Engineering. 6233. DOI: 10.1117/12.667961 |
0.337 |
|
| 2006 |
Chan P, Lin G, Yuen T, Roysam B, Sealfon SC. Development of multiplex immunohistochemistry and in situ hybridization using colloidal quantum dots for semi-automated neuronal expression mapping in brain Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6096. DOI: 10.1117/12.661780 |
0.318 |
|
| 2006 |
Padfield D, Rittscher J, Thomas N, Roysam B. Validation methods for cell cycle analysis algorithms in confocal fluorescence images 2006 Ieee/Nlm Life Science Systems and Applications Workshop, Lisa 2006. DOI: 10.1109/LSSA.2006.250406 |
0.782 |
|
| 2006 |
Chen Y, Lin G, Al-Kofahi O, Mohler WA, Roysam B. Automated extraction of cell lineages and spatial migration paths in live C. elegans embryos from 4D fluorescence microscopy image sequences Microscopy and Microanalysis. 12: 1672-1673. DOI: 10.1017/S1431927606062039 |
0.748 |
|
| 2006 |
Roysam B, Lin G, Abdul-Karim MA, Al-Kofahi O, Al-Kofahi K, Shain W, Szarowski DH, Turner JN. Automated three-dimensional image analysis methods for confocal microscopy Handbook of Biological Confocal Microscopy: Third Edition. 316-337. DOI: 10.1007/978-0-387-45524-2_15 |
0.821 |
|
| 2006 |
Padfield DR, Rutscher J, Sebastian T, Thomas N, Roysam B. Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images 2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 2006: 1036-1039. |
0.791 |
|
| 2006 |
Tyrrell JA, Roysam B, Di Tomaso E, Tong R, Brown EB, Jain RK. Robust 3-D modeling of tumor microvasculature using superellipsoids 2006 3rd Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 2006: 185-188. |
0.657 |
|
| 2005 |
Narasimha-Iyer H, Beach JM, Khoobehi B, Ning J, Kawano H, Roysam B. Algorithms for automated oximetry along the retinal vascular tree from dual-wavelength fundus images. Journal of Biomedical Optics. 10: 054013. PMID 16292973 DOI: 10.1117/1.2113187 |
0.816 |
|
| 2005 |
Tyrrell JA, Mahadevan V, Tong RT, Brown EB, Jain RK, Roysam B. A 2-D/3-D model-based method to quantify the complexity of microvasculature imaged by in vivo multiphoton microscopy. Microvascular Research. 70: 165-78. PMID 16239015 DOI: 10.1016/J.Mvr.2005.08.005 |
0.777 |
|
| 2005 |
Abdul-Karim MA, Roysam B, Dowell-Mesfin NM, Jeromin A, Yuksel M, Kalyanaraman S. Automatic selection of parameters for vessel/neurite segmentation algorithms. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 14: 1338-50. PMID 16190469 DOI: 10.1109/Tip.2005.852462 |
0.447 |
|
| 2005 |
Lin G, Bjornsson CS, Smith KL, Abdul-Karim MA, Turner JN, Shain W, Roysam B. Automated image analysis methods for 3-D quantification of the neurovascular unit from multichannel confocal microscope images. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 66: 9-23. PMID 15934061 DOI: 10.1002/Cyto.A.20149 |
0.433 |
|
| 2005 |
Radke RJ, Andra S, Al-Kofahi O, Roysam B. Image change detection algorithms: a systematic survey. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 14: 294-307. PMID 15762326 DOI: 10.1109/Tip.2004.838698 |
0.776 |
|
| 2005 |
Lin G, Chawla MK, Olson K, Guzowski JF, Barnes CA, Roysam B. Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 63: 20-33. PMID 15584021 DOI: 10.1002/Cyto.A.20099 |
0.447 |
|
| 2005 |
Mahadevan V, Tyrrell JA, Tong RT, Brown EB, Jain RK, Roysam B. Complexity analysis of angiogenesis vasculature Progress in Biomedical Optics and Imaging - Proceedings of Spie. 5747: 526-536. DOI: 10.1117/12.596016 |
0.641 |
|
| 2005 |
Narasimha-Iyer H, Dowell-Mesfin NM, Abdul-Karim M, Roysam B, Turner J, Shain W. Associative Multiple-Label Image Analysis Method for Synapse Identification in Neuronal Cultures: Application to Comparative Analysis of Synapse Formation Efficiency & Distribution on Smooth and Topographically Modified Surfaces Microscopy and Microanalysis. 11. DOI: 10.1017/S1431927605501879 |
0.795 |
|
| 2004 |
Mahadevan V, Narasimha-Iyer H, Roysam B, Tanenbaum HL. Robust model-based vasculature detection in noisy biomedical images. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 8: 360-76. PMID 15484442 DOI: 10.1109/TITB.2004.834410 |
0.823 |
|
| 2004 |
Chawla MK, Lin G, Olson K, Vazdarjanova A, Burke SN, McNaughton BL, Worley PF, Guzowski JF, Roysam B, Barnes CA. 3D-catFISH: a system for automated quantitative three-dimensional compartmental analysis of temporal gene transcription activity imaged by fluorescence in situ hybridization. Journal of Neuroscience Methods. 139: 13-24. PMID 15351517 DOI: 10.1016/J.Jneumeth.2004.04.017 |
0.479 |
|
| 2004 |
Tyrrell JA, LaPre JM, Carothers CD, Roysam B, Stewart CV. Efficient migration of complex off-line computer vision software to real-time system implementation on generic computer hardware. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 8: 142-53. PMID 15217259 DOI: 10.1109/TITB.2004.828883 |
0.678 |
|
| 2004 |
Tsai CL, Stewart CV, Tanenbaum HL, Roysam B. Model-based method for improving the accuracy and repeatability of estimating vascular bifurcations and crossovers from retinal fundus images. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 8: 122-30. PMID 15217257 DOI: 10.1109/TITB.2004.826733 |
0.642 |
|
| 2004 |
Lin G, Stewart CV, Roysam B, Fritzsche K, Yang G, Tanenbaum HL. Predictive scheduling algorithms for real-time feature extraction and spatial referencing: application to retinal image sequences. Ieee Transactions On Bio-Medical Engineering. 51: 115-25. PMID 14723500 DOI: 10.1109/Tbme.2003.820332 |
0.776 |
|
| 2004 |
Tyrrell JA, Mahadevan V, Tong R, Roysam B, Brown EB, Jain RK. Robust parametric modeling for improved segmentation of complex tumor microvasculature from multiphoton microscopy data Microscopy and Microanalysis. 10: 176-177. DOI: 10.1017/S1431927604885787 |
0.67 |
|
| 2003 |
Al-Kofahi KA, Can A, Lasek S, Szarowski DH, Dowell-Mesfin N, Shain W, Turner JN, Roysam B. Median-based robust algorithms for tracing neurons from noisy confocal microscope images. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 7: 302-17. PMID 15000357 DOI: 10.1109/TITB.2003.816564 |
0.816 |
|
| 2003 |
Gee MS, Makonnen S, al-Kofahi K, Roysam B, Payvandi F, Man HW, Muller GW, Lee WM. Selective cytokine inhibitory drugs with enhanced antiangiogenic activity control tumor growth through vascular inhibition. Cancer Research. 63: 8073-8. PMID 14678955 |
0.743 |
|
| 2003 |
Stewart CV, Tsai CL, Roysam B. The dual-bootstrap iterative closest point algorithm with application to retinal image registration. Ieee Transactions On Medical Imaging. 22: 1379-94. PMID 14606672 DOI: 10.1109/Tmi.2003.819276 |
0.685 |
|
| 2003 |
Lin G, Adiga U, Olson K, Guzowski JF, Barnes CA, Roysam B. A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 56: 23-36. PMID 14566936 DOI: 10.1002/Cyto.A.10079 |
0.498 |
|
| 2003 |
Abdul-Karim MA, Al-Kofahi K, Brown EB, Jain RK, Roysam B. Automated tracing and change analysis of angiogenic vasculature from in vivo multiphoton confocal image time series. Microvascular Research. 66: 113-25. PMID 12935769 DOI: 10.1016/S0026-2862(03)00039-6 |
0.843 |
|
| 2003 |
He W, Hamilton TA, Cohen AR, Holmes TJ, Pace C, Szarowski DH, Turner JN, Roysam B. Automated three-dimensional tracing of neurons in confocal and brightfield images. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 9: 296-310. PMID 12901764 DOI: 10.1017/S143192760303040X |
0.544 |
|
| 2003 |
Can A, Al-Kofahi O, Lasek S, Szarowski DH, Turner JN, Roysam B. Attenuation correction in confocal laser microscopes: a novel two-view approach. Journal of Microscopy. 211: 67-79. PMID 12839553 DOI: 10.1046/J.1365-2818.2003.01195.X |
0.841 |
|
| 2003 |
Al-Kofahi O, Can A, Lasek S, Szarowski DH, Turner JN, Roysam B. Algorithms for accurate 3D registration of neuronal images acquired by confocal scanning laser microscopy. Journal of Microscopy. 211: 8-18. PMID 12839546 DOI: 10.1046/J.1365-2818.2003.01196.X |
0.841 |
|
| 2003 |
Abdul-Karim MA, Al-Kofahi O, Brown EB, Jain RK, Al-Kofahi K, Roysam B. Automated in vivo change analysis of tumor vasculature from two-photon confocal image time series Proceedings of Spie - the International Society For Optical Engineering. 4963: 151-159. DOI: 10.1117/12.477991 |
0.829 |
|
| 2003 |
Shen H, Stewart CV, Roysam B, Lin G, Tanenbaum HL. Frame-rate spatial referencing based on invariant indexing and alignment with application to online retinal image registration Ieee Transactions On Pattern Analysis and Machine Intelligence. 25: 379-384. DOI: 10.1109/TPAMI.2003.1182101 |
0.309 |
|
| 2003 |
Karim MAA, Al-Kofahi K, Roysam B, Dowell-Mesfin N, Hussain RJ, Shain W, Turner JN. Computer Vision Algorithms for Quantifying the Growth and Behavior of Neurons Cultured on Nanofabricated Surfaces Ieee Computer Society Conference On Computer Vision and Pattern Recognition Workshops. 2. DOI: 10.1109/CVPRW.2003.10016 |
0.759 |
|
| 2003 |
Abdul-Karim MA, Al-Kofahi K, Brown EB, Jain RK, Roysam B. Automated change analysis of registered angiogenic vasculature images from in vivo multiphoton time series images Microscopy and Microanalysis. 9: 1150-1151. DOI: 10.1017/S1431927603445753 |
0.822 |
|
| 2003 |
Tsai CL, Majerovics A, Stewart CV, Roysam B. Disease-oriented evaluation of Dual-Bootstrap retinal image registration Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2878: 754-761. |
0.57 |
|
| 2002 |
Al-Kofahi KA, Lasek S, Szarowski DH, Pace CJ, Nagy G, Turner JN, Roysam B. Rapid automated three-dimensional tracing of neurons from confocal image stacks. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 6: 171-87. PMID 12075671 DOI: 10.1109/TITB.2002.1006304 |
0.833 |
|
| 2002 |
Tsai CL, Stewart CV, Roysam B, Tanenbaum HL. Covariance-driven retinal image registration initialized from small sets of landmark correspondences Proceedings - International Symposium On Biomedical Imaging. 2002: 333-336. DOI: 10.1109/ISBI.2002.1029261 |
0.593 |
|
| 2002 |
Can A, Stewart CV, Roysam B, Tanenbaum HL. A feature-based technique for joint, linear estimation of high-order image-to-Mosaic transformations: Mosaicing the curved human retina Ieee Transactions On Pattern Analysis and Machine Intelligence. 24: 412-419. DOI: 10.1109/34.990145 |
0.652 |
|
| 2002 |
Can A, Stewart CV, Roysam B, Tanenbaum HL. A feature-based, robust, hierarchical algorithm for registering pairs of images of the curved human retina Ieee Transactions On Pattern Analysis and Machine Intelligence. 24: 347-364. DOI: 10.1109/34.990136 |
0.686 |
|
| 2002 |
Al-Kofahi O, Can A, Lasek S, Szarowski D, Turner J, Roysam B. Multi-view three-dimensional image montaging & signal attenuation correction for maximizing the imaging depth and lateral extent of confocal microscopes Microscopy and Microanalysis. 8: 1042-1043. DOI: 10.1017/S1431927602102893 |
0.82 |
|
| 2001 |
Shen H, Roysam B, Stewart CV, Turner JN, Tanenbaum HL. Optimal scheduling of tracing computations for real-time vascular landmark extraction from retinal fundus images. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 5: 77-91. PMID 11300219 DOI: 10.1109/4233.908405 |
0.345 |
|
| 2001 |
Roysam B, Can A, Al-Kofahi K, Laser S, Szarowski DH, Turner JN. Biological confocal microscopy: Automated three-dimensional image analysis Scanning. 23: 83-84. |
0.39 |
|
| 2000 |
Al-Kofahi K, Lasek S, Turner JN, Roysam B. Rapid Automated 3-D Tracing of Neurons from Confocal Image Stacks Microscopy and Microanalysis. 6: 824-825. DOI: 10.1017/S1431927600036618 |
0.815 |
|
| 2000 |
Can A, Lasek S, Szarowski DH, Turner JN, Roysam B. A Robust Two-View Method for Increasing the Imaging Depth and Correcting for Signal Attenuation in Confocal Microscope Images Microscopy and Microanalysis. 6: 818-819. DOI: 10.1017/S1431927600036588 |
0.666 |
|
| 2000 |
Can A, Stewart CV, Roysam B, Tanenbaum HL. Feature-based technique for joint, linear estimation of high-order image-to-mosaic transformations: application to mosaicing the curved human retina Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2: 585-591. |
0.55 |
|
| 1999 |
Can A, Shen H, Turner JN, Tanenbaum HL, Roysam B. Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 3: 125-38. PMID 10719494 DOI: 10.1109/4233.767088 |
0.635 |
|
| 1999 |
Shain W, Kayali S, Szarowski D, Davis-Cox M, Ancin H, Bhattacharjya AK, Roysam B, Turner JN. Application and Quantitative Validation of Computer-Automated Three-Dimensional Counting of Cell Nuclei. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 5: 106-119. PMID 10341010 DOI: 10.1017/S1431927699000069 |
0.448 |
|
| 1999 |
Turner JN, Shain W, Szarowski DH, Lasek S, Sipple B, Pace C, Al-Kafahi K, Can A, Roysam B. Confocal light microscopy of brain cells and tissue: Image analysis and quantitation Acta Histochemica Et Cytochemica. 32: 5-11. DOI: 10.1267/Ahc.32.5 |
0.665 |
|
| 1999 |
Ostrander LE, Roysam B. Tailoring an Introductory Course in Biomedical Imaging International Journal of Engineering Education. 15: 265-269. |
0.383 |
|
| 1998 |
Mackin RW, Newton LM, Turner JN, Roysam B. Advances in high-speed, three-dimensional imaging and automated segmentation algorithms for thick and overlapped clusters in cytologic preparations: Application to cervical smears Analytical and Quantitative Cytology and Histology. 20: 105-121. PMID 9569968 |
0.407 |
|
| 1998 |
Becker DE, Can A, Turner JN, Tanenbaum HL, Roysam B. Image processing algorithms for retinal montage synthesis, mapping, and real-time location determination. Ieee Transactions On Bio-Medical Engineering. 45: 105-18. PMID 9444845 DOI: 10.1109/10.650362 |
0.677 |
|
| 1997 |
Can A, Shen H, Al-Kofahi K, Turner JN, Tanenbaum HL, McCandless B, Roysam B. Rapid, Automated, and Robust Tracing of Vasculature, and Quantification of Visual Features from Angiographic Images Microscopy and Microanalysis. 3: 325-326. DOI: 10.1017/S1431927600008515 |
0.809 |
|
| 1997 |
Turner JN, Ancin H, Becker DE, Szarowski DH, Holmes M, O'Connor N, Wang M, Holmes T, Roysam B. Automated image analysis technologies for biological 3D light microscopy International Journal of Imaging Systems and Technology. 8: 240-254. DOI: 10.1002/(Sici)1098-1098(1997)8:3<240::Aid-Ima2>3.0.Co;2-A |
0.541 |
|
| 1996 |
Becker DE, Ancin H, Szarowski DH, Turner JN, Roysam B. Automated 3-D montage synthesis from laser-scanning confocal images: Application to quantitative tissue-level cytological analysis Cytometry. 25: 235-245. PMID 8914820 DOI: 10.1002/(Sici)1097-0320(19961101)25:3<235::Aid-Cyto4>3.0.Co;2-E |
0.53 |
|
| 1996 |
Ancin H, Roysam B, Dufresne TE, Chestnut MM, Ridder GM, Szarowski DH, Turner JN. Advances in automated 3-D image analysis of cell populations imaged by confocal microscopy Cytometry. 25: 221-234. PMID 8914819 DOI: 10.1002/(Sici)1097-0320(19961101)25:3<221::Aid-Cyto3>3.0.Co;2-I |
0.561 |
|
| 1996 |
Roysam B, Becker DE, Turner JN, Tanenbaum HL. Real-time image processing algorithms for an computer-assisted retinal laser surgery system Investigative Ophthalmology and Visual Science. 37. |
0.422 |
|
| 1996 |
Chestnut MH, Otte TE, Dufresne TE, Ancin H, Roysam B, Ridder GM. Confocal microscopy and three-dimensional image analysis of cell replication Scanning. 18: 211-212. |
0.369 |
|
| 1994 |
Cohen AR, Roysam B, Turner JN. Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data Journal of Microscopy. 173: 103-114. PMID 8169949 DOI: 10.1111/J.1365-2818.1994.Tb03433.X |
0.426 |
|
| 1994 |
Roysam B, Ancin H, Bhattacharjya AK, Chisti MA, Seegal R, Turner JN. Algorithms for automated characterization of cell populations in thick specimens from 3-D confocal fluorescence microscopy data Journal of Microscopy. 173: 115-126. PMID 7909568 DOI: 10.1111/J.1365-2818.1994.Tb03434.X |
0.469 |
|
| 1994 |
Turner JN, Szarowski DH, Turner TJ, Ancin H, Lin WC, Roysam B, Holmes TJ. Three-dimensional imaging and image analysis of hippocampal neurons: confocal and digitally enhanced wide field microscopy. Microscopy Research and Technique. 29: 269-78. PMID 7841499 DOI: 10.1002/Jemt.1070290403 |
0.517 |
|
| 1994 |
Bhattacharjya AK, Roysam B. Joint Solution of Low, Intermediate, and High-Level Vision Tasks by Evolutionary Optimization: Application to Computer Vision at Low SNR Ieee Transactions On Neural Networks. 5: 83-95. DOI: 10.1109/72.265963 |
0.406 |
|
| 1994 |
Becker DE, Ancin H, Roysam B, Turner JN. Fast automated mosaic synthesis method for 2-D/3-D image analysis of specimens much wider than the field of view Proceedings - Annual Meeting, Microscopy Society of America. 224-225. |
0.418 |
|
| 1994 |
Ancin H, Roysam B, Chestnut MH, Otte TE, Szarowski DH, Turner JN. Automated counting and 3-D morphometry of nuclei in thick tissue slices from laser-scanning confocal microscopy data Proceedings - Annual Meeting, Microscopy Society of America. 222-223. |
0.395 |
|
| 1994 |
Turner JN, Roysam B, Holmes TJ, Szarowski DH, Lin W, Bhattacharyya S, Ancin H, Mackin R, Becker D. Visualization and quantitation of cellular and tissue anatomy by 3D light microscopy Proceedings - Annual Meeting, Microscopy Society of America. 928-929. |
0.315 |
|
| 1993 |
Willis B, Roysam B, Turner JN, Holmes TJ. Iterative, constrained 3-D image reconstruction of transmitted light bright-field micrographs based on maximum likelihood estimation. Journal of Microscopy. 169: 347-61. PMID 8478915 DOI: 10.1111/J.1365-2818.1993.Tb03311.X |
0.432 |
|
| 1993 |
Willis B, Turner JN, Collins DN, Roysam B, Holmes TJ. Developments in three-dimensional stereo brightfield microscopy. Microscopy Research and Technique. 24: 437-51. PMID 8318726 DOI: 10.1002/Jemt.1070240509 |
0.494 |
|
| 1993 |
Mackin RW, Roysam B, Holmes TJ, Turner JN. Automated three-dimensional image analysis of thick and overlapped clusters in cytologic preparations. Application to cytologic smears. Analytical and Quantitative Cytology and Histology / the International Academy of Cytology [and] American Society of Cytology. 15: 405-17. PMID 8297431 |
0.385 |
|
| 1992 |
Roysam B, Maffitt DR, Miller MI, Saffitz JE, Thomas LJ. A personal computer based implementation of the maximum-likelihood method of analysis of electron microscope autoradiographs Microscopy Research and Technique. 20: 73-86. PMID 1611151 DOI: 10.1002/Jemt.1070200108 |
0.315 |
|
| 1992 |
Roysam B, Bhattacharjya AK, Srinivas C, Szarowski DH, Turner JN. Unsupervised noise removal algorithms for three-dimensional confocal fluorescence microscopy Micron and Microscopica Acta. 23: 447-461. DOI: 10.1016/0739-6260(92)90020-E |
0.468 |
|
| 1992 |
Bhattacharjya AK, Becker DE, Roysam B. A genetic algorithm for intelligent imaging from quantum-limited data Signal Processing. 28: 335-348. DOI: 10.1016/0165-1684(92)90047-Z |
0.354 |
|
| 1991 |
Miller MI, Roysam B, Smith KR, O'Sullivan JA. Representing and computing regular languages on massively parallel networks. Ieee Transactions On Neural Networks / a Publication of the Ieee Neural Networks Council. 2: 56-72. PMID 18276351 DOI: 10.1109/72.80291 |
0.312 |
|
| 1991 |
Miller MI, Roysam B. Bayesian image reconstruction for emission tomography incorporating Good's roughness prior on massively parallel processors Proceedings of the National Academy of Sciences of the United States of America. 88: 3223-3227. PMID 2014243 DOI: 10.1073/Pnas.88.8.3223 |
0.449 |
|
| 1987 |
Fuhrmann DR, Brown MA, Miller MI, Roysam B, Saffitz JE, Thomas LJ. Data acquisition system for maximum-likelihood analysis of electron microscopic autoradiographs Journal of Electron Microscopy Technique. 7: 199-204. PMID 3504447 DOI: 10.1002/Jemt.1060070309 |
0.367 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 1993 |
Lin W, Holmes T, Ancin H, Roysam B, Szarowski DH, Turner JN. Three-dimensional light microscopy, optimized staining, and automated image analysis of cell nuclei in thick tissue slices Proceedings - Annual Meeting, Microscopy Society of America. 268-269. |
0.298 |
|
| 1998 |
Mackin RW, Newton LM, Turner JN, Holmes TJ, Roysam B. Accuracy of nuclear classification in cervical smear images. Quantitative impact of computational deconvolution and 3-D feature computation. Analytical and Quantitative Cytology and Histology / the International Academy of Cytology [and] American Society of Cytology. 20: 77-91. PMID 9569965 |
0.294 |
|
| 2021 |
Maric D, Jahanipour J, Li XR, Singh A, Mobiny A, Van Nguyen H, Sedlock A, Grama K, Roysam B. Whole-brain tissue mapping toolkit using large-scale highly multiplexed immunofluorescence imaging and deep neural networks. Nature Communications. 12: 1550. PMID 33692351 DOI: 10.1038/s41467-021-21735-x |
0.287 |
|
| 2011 |
Melichar HJ, Li O, Herzmark P, Padmanabhan RK, Oliaro J, Ludford-Menting MJ, Bousso P, Russell SM, Roysam B, Robey EA. Quantifying subcellular distribution of fluorescent fusion proteins in cells migrating within tissues. Immunology and Cell Biology. 89: 549-57. PMID 20956985 DOI: 10.1038/Icb.2010.122 |
0.287 |
|
| 2004 |
Dowell-Mesfin NM, Abdul-Karim MA, Turner AM, Schanz S, Craighead HG, Roysam B, Turner JN, Shain W. Topographically modified surfaces affect orientation and growth of hippocampal neurons. Journal of Neural Engineering. 1: 78-90. PMID 15876626 DOI: 10.1088/1741-2560/1/2/003 |
0.283 |
|
| 2013 |
Liadi I, Singh H, Romain G, Rey-Villamizar N, Merouane A, Roysam B, Cooper LJ, Varadarajan N. Quantitative single-cell characterization of CAR+ T cell effector functions Journal For Immunotherapy of Cancer. 1: P36. DOI: 10.1186/2051-1426-1-S1-P36 |
0.281 |
|
| 2003 |
Abdul-Karim MA, Dowell-Mesfin NM, Shain W, Turner JN, Roysam B. Automated classification and analysis of axons and dendrites of hippocampal neurons in cell culture Microscopy and Microanalysis. 9: 188-189. DOI: 10.1017/S143192760344052X |
0.281 |
|
| 2015 |
Romain G, Singh H, Liadi I, Adolacion JR, Roysam B, Cooper L, Varadarajan N. Single cell metrics of the efficacy of CAR T cells Journal For Immunotherapy of Cancer. 3. DOI: 10.1186/2051-1426-3-S2-P324 |
0.279 |
|
| 2014 |
Varadarajan N, Cooper LJ, Ivan L, Singh H, Roysam B, Gabrielle R, Amin M. Functional and Molecular Characterization of Serial Killer CAR+ T Cells Demonstrates Adaptive Modification of Fate and Behavior Based on Tumor Cell Density Blood. 124: 658-658. DOI: 10.1182/Blood.V124.21.658.658 |
0.278 |
|
| 2017 |
An X, Sendra VG, Liadi I, Ramesh B, Romain G, Haymaker C, Martinez-Paniagua M, Lu Y, Radvanyi LG, Roysam B, Varadarajan N. Single-cell profiling of dynamic cytokine secretion and the phenotype of immune cells. Plos One. 12: e0181904. PMID 28837583 DOI: 10.1371/Journal.Pone.0181904 |
0.278 |
|
| 2015 |
Liadi I, Singh H, Romain G, Rey-Villamizar N, Merouane A, Adolacion JR, Kebriaei P, Huls H, Qiu P, Roysam B, Cooper LJ, Varadarajan N. Individual Motile CD4(+) T Cells Can Participate in Efficient Multikilling through Conjugation to Multiple Tumor Cells. Cancer Immunology Research. 3: 473-82. PMID 25711538 DOI: 10.1158/2326-6066.Cir-14-0195 |
0.276 |
|
| 2023 |
Faulkenberry R, Prasad S, Maric D, Roysam B. Visual Prompting based Incremental Learning for Semantic Segmentation of Multiplex Immuno-Flourescence Microscopy Imagery. Research Square. PMID 38234728 DOI: 10.21203/rs.3.rs-3783494/v1 |
0.271 |
|
| 2019 |
Mobiny A, Lu H, Nguyen HV, Roysam B, Varadarajan N. Automated Classification of Apoptosis in Phase Contrast Microscopy Using Capsule Network. Ieee Transactions On Medical Imaging. PMID 31135355 DOI: 10.1109/Tmi.2019.2918181 |
0.271 |
|
| 1992 |
Roysam B, Bhattacharjya AK. Hierarchically Structured Unit-Simplex Transformations for Parallel Distributed Optimization Problems Ieee Transactions On Neural Networks. 3: 108-114. DOI: 10.1109/72.105423 |
0.269 |
|
| 2020 |
Becker JU, Mayerich D, Padmanabhan M, Barratt J, Ernst A, Boor P, Cicalese PA, Mohan C, Nguyen HV, Roysam B. Artificial intelligence and machine learning in nephropathology. Kidney International. PMID 32475607 DOI: 10.1016/J.Kint.2020.02.027 |
0.268 |
|
| 2012 |
Hogrebe L, Paiva AR, Jurrus E, Christensen C, Bridge M, Dai L, Pfeiffer RL, Hof PR, Roysam B, Korenberg JR, Tasdizen T. Serial section registration of axonal confocal microscopy datasets for long-range neural circuit reconstruction. Journal of Neuroscience Methods. 207: 200-10. PMID 22465678 DOI: 10.1016/J.Jneumeth.2012.03.002 |
0.267 |
|
| 2014 |
Romain G, Senyukov V, Rey-Villamizar N, Merouane A, Kelton W, Liadi I, Mahendra A, Charab W, Georgiou G, Roysam B, Lee DA, Varadarajan N. Antibody Fc engineering improves frequency and promotes kinetic boosting of serial killing mediated by NK cells. Blood. 124: 3241-9. PMID 25232058 DOI: 10.1182/Blood-2014-04-569061 |
0.265 |
|
| 2004 |
Warner CM, Newmark JA, Comiskey M, De Fazio SR, O'Malley DM, Rajadhyaksha M, Townsend DJ, McKnight S, Roysam B, Dwyer PJ, DiMarzio CA. Genetics and imaging to assess oocyte and preimplantation embryo health. Reproduction, Fertility, and Development. 16: 729-41. PMID 15740696 DOI: 10.1071/Rd04088 |
0.264 |
|
| 1988 |
Miller MI, Roysam B, Smith KR. Mapping rule-based and stochastic constraints to connection architectures: Implication for hierarchical image processing Proceedings of Spie - the International Society For Optical Engineering. 1001: 1078-1085. DOI: 10.1117/12.969061 |
0.26 |
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| 2015 |
Martinez-Paniagua M, Haymaker C, Adolacion JR, Radvanyi L, Hwu P, Roysam B, Bernatchez C, Varadarajan N. Single-cell motility and gene expression signature as predictors of the overall survival of act in melanoma patients Journal For Immunotherapy of Cancer. 3. DOI: 10.1186/2051-1426-3-S2-P33 |
0.257 |
|
| 2010 |
Kokovay E, Goderie S, Wang Y, Lotz S, Lin G, Sun Y, Roysam B, Shen Q, Temple S. Adult SVZ lineage cells home to and leave the vascular niche via differential responses to SDF1/CXCR4 signaling. Cell Stem Cell. 7: 163-73. PMID 20682445 DOI: 10.1016/J.Stem.2010.05.019 |
0.253 |
|
| 2011 |
Mayerich D, Bjornsson C, Taylor J, Roysam B. Metrics for comparing explicit representations of interconnected biological networks Ieee Symposium On Biological Data Visualization 2011, Biovis 2011 - Proceedings. 79-86. DOI: 10.1109/BioVis.2011.6094051 |
0.251 |
|
| 2009 |
Schaeffer M, Han SJ, Chtanova T, van Dooren GG, Herzmark P, Chen Y, Roysam B, Striepen B, Robey EA. Dynamic imaging of T cell-parasite interactions in the brains of mice chronically infected with Toxoplasma gondii. Journal of Immunology (Baltimore, Md. : 1950). 182: 6379-93. PMID 19414791 DOI: 10.4049/Jimmunol.0804307 |
0.25 |
|
| 1992 |
Roysam B, Miller MI. Combining stochastic and syntactic processing with analog computation methods Digital Signal Processing. 2: 48-64. DOI: 10.1016/1051-2004(92)90025-T |
0.248 |
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| 2007 |
Ruf F, Hayot F, Park MJ, Ge Y, Lin G, Roysam B, Sealfon SC. Noise propagation and scaling in regulation of gonadotrope biosynthesis. Biophysical Journal. 93: 4474-80. PMID 17720728 DOI: 10.1529/Biophysj.107.115170 |
0.248 |
|
| 2016 |
Barton EA, Lu Y, Megjhani M, Maynard ME, Kulkarni PM, Roysam B, Leasure JL. Binge Alcohol Alters Exercise-Driven Neuroplasticity. Neuroscience. PMID 27932309 DOI: 10.1016/J.Neuroscience.2016.11.041 |
0.237 |
|
| 2010 |
Wang Y, Roysam B. Joint tracking and locomotion state recognition of C. elegans from time-lapse image sequences 2010 7th Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Isbi 2010 - Proceedings. 540-543. DOI: 10.1109/ISBI.2010.5490291 |
0.236 |
|
| 2008 |
Ladi E, Schwickert TA, Chtanova T, Chen Y, Herzmark P, Yin X, Aaron H, Chan SW, Lipp M, Roysam B, Robey EA. Thymocyte-dendritic cell interactions near sources of CCR7 ligands in the thymic cortex. Journal of Immunology (Baltimore, Md. : 1950). 181: 7014-23. PMID 18981121 DOI: 10.4049/Jimmunol.181.10.7014 |
0.224 |
|
| 2009 |
Roysam B, Shain W, Ascoli GA. The central role of neuroinformatics in the National Academy of Engineering's grandest challenge: reverse engineer the brain. Neuroinformatics. 7: 1-5. PMID 19140032 DOI: 10.1007/S12021-008-9043-9 |
0.222 |
|
| 2009 |
Mitra K, Wunder C, Roysam B, Lin G, Lippincott-Schwartz J. A hyperfused mitochondrial state achieved at G1-S regulates cyclin E buildup and entry into S phase. Proceedings of the National Academy of Sciences of the United States of America. 106: 11960-5. PMID 19617534 DOI: 10.1073/Pnas.0904875106 |
0.221 |
|
| 2011 |
Choi SG, Ruf-Zamojski F, Pincas H, Roysam B, Sealfon SC. Characterization of a MAPK scaffolding protein logic gate in gonadotropes. Molecular Endocrinology (Baltimore, Md.). 25: 1027-39. PMID 21436256 DOI: 10.1210/Me.2010-0387 |
0.21 |
|
| 2009 |
Frampton JP, Hynd MR, Vargun A, Roysam B, Shain W. An in vitro system for modeling brain reactive responses and changes in neuroprosthetic device impedance. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 7155-8. PMID 19965268 DOI: 10.1109/IEMBS.2009.5335352 |
0.202 |
|
| 2017 |
Lee HC, Gaire J, Roysam B, Otto KJ. Placing Sites on the Edge of Planar Silicon Microelectrodes Enhances Chronic Recording Functionality. Ieee Transactions On Bio-Medical Engineering. PMID 28641240 DOI: 10.1109/Tbme.2017.2715811 |
0.198 |
|
| 2011 |
Leng Z, Korenberg JR, Roysam B, Tasdizen T. A rapid 2-D centerline extraction method based on tensor voting Proceedings - International Symposium On Biomedical Imaging. 1000-1003. DOI: 10.1109/ISBI.2011.5872570 |
0.17 |
|
| 2023 |
Wu KL, Martinez-Paniagua M, Reichel K, Menon PS, Deo S, Roysam B, Varadarajan N. Automated Detection of Apoptotic Bodies and Cells in Label-Free Time-lapse High-throughput Video Microscopy using Deep Convolutional Neural Networks. Bioinformatics (Oxford, England). PMID 37773981 DOI: 10.1093/bioinformatics/btad584 |
0.163 |
|
| 2005 |
Guzowski JF, Timlin JA, Roysam B, McNaughton BL, Worley PF, Barnes CA. Mapping behaviorally relevant neural circuits with immediate-early gene expression. Current Opinion in Neurobiology. 15: 599-606. PMID 16150584 DOI: 10.1016/J.Conb.2005.08.018 |
0.155 |
|
| 2001 |
Turner JN, Szarowski DH, Lasek S, Sipple BA, Shain W, Can A, Al-Kofahi K, Roysam B. Biological confocal microscopy: Applications and quantitation Scanning. 23: 82-83. |
0.142 |
|
| 2006 |
Ruf F, Park MJ, Hayot F, Lin G, Roysam B, Ge Y, Sealfon SC. Mixed analog/digital gonadotrope biosynthetic response to gonadotropin-releasing hormone. The Journal of Biological Chemistry. 281: 30967-78. PMID 16916798 DOI: 10.1074/Jbc.M606486200 |
0.135 |
|
| 1993 |
Roysam B, Cohen AR, Getto PH, Boyce PR. A numerical approach to the computation of light propagation through turbid media: Application to the evaluation of lighted exit signs Ieee Transactions On Industry Applications. 29: 661-669. DOI: 10.1109/28.222442 |
0.129 |
|
| 2024 |
Faulkenberry R, Prasad S, Maric D, Roysam B. Visual Prompting Based Incremental Learning for Semantic Segmentation of Multiplex Immuno-Flourescence Microscopy Imagery. Neuroinformatics. PMID 38396218 DOI: 10.1007/s12021-024-09651-z |
0.12 |
|
| 2001 |
Shen H, Stewart CV, Roysam B, Lin G, Tanenbaum HL. Frame-rate spatial referencing based on invariant indexing and alignment with application to laser retinal surgery Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1: I79-I86. |
0.098 |
|
| 2004 |
Bjornsson CS, Lin G, Abdul-Karim MA, Szarowski DH, Smith KL, LeBlanc D, Roysam B, Shain W, Turner JN. Brain vascular damage due to neuroprosthetic insertion: Casting and quantitative analysis Microscopy and Microanalysis. 10: 1478-1479. DOI: 10.1017/S1431927604885271 |
0.092 |
|
| 2000 |
Turner JN, Shain W, Szarowski DH, Lasek S, Dowell N, Sipple B, Can A, Al-Kofahi K, Roysam B. Three-dimensional light microscopy: Observation of thick objects Journal of Histotechnology. 23: 205-217. |
0.086 |
|
| 2013 |
Embrechts MJ, Gatti CJ, Linton J, Roysam B. Hierarchical clustering for large data sets Studies in Computational Intelligence. 410: 197-233. DOI: 10.1007/978-3-642-28696-4-8 |
0.082 |
|
| 2021 |
Sadeghi F, Kumar M, Bandey IN, Li X, Roysam B, Varadarajan N. Salicylic acid inducible nucleocytoplasmic shuttling of NPR1 fusion proteins in human cells. Biotechnology and Bioengineering. PMID 34698368 DOI: 10.1002/bit.27966 |
0.079 |
|
| 2022 |
Broussard JI, Redell JB, Maynard ME, Zhao J, Moore A, Mills RW, Hood KN, Underwood E, Roysam B, Dash PK. Impaired Experience-Dependent Refinement of Place Cells in a Rat Model of Alzheimer's Disease. Journal of Alzheimer's Disease : Jad. PMID 35253742 DOI: 10.3233/JAD-215023 |
0.068 |
|
| 1993 |
Roysam B. Computational Vision (Harry Wechsler) Siam Review. 35: 165-166. DOI: 10.1137/1035034 |
0.058 |
|
| 2013 |
Lu Y, Trett K, Shain W, Carin L, Coifman R, Roysam B. Quantitative profiling of microglia populations using harmonic co-clustering of arbor morphology measurements Proceedings - International Symposium On Biomedical Imaging. 1360-1363. DOI: 10.1109/ISBI.2013.6556785 |
0.055 |
|
| 2007 |
Roysam B. What is your brain worth? [4] Scientist. 21: 14. |
0.023 |
|
| 1996 |
Shain W, Ancin H, Craighead HC, Isaacson M, Kam LC, Roysam B, Szarowski D, Turner JN, Turner SW. Adhesion of astrocytes to charge modified silicon substrates Transactions of the Annual Meeting of the Society For Biomaterials in Conjunction With the International Biomaterials Symposium. 1: 310. |
0.016 |
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