Bret R. Larget - Publications

University of Wisconsin, Madison, Madison, WI 

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Shim H, Larget B. BayesCAT: Bayesian co-estimation of alignment and tree. Biometrics. PMID 28099991 DOI: 10.1111/Biom.12640  0.48
2016 Sievers CK, Zou LS, Pickhardt PJ, Matkowskyj KA, Albrecht DM, Clipson L, Bacher JW, Pooler BD, Moawad FJ, Cash BD, Reichelderfer M, Vo TN, Newton MA, Larget BR, Halberg RB. Subclonal diversity arises early even in small colorectal tumours and contributes to differential growth fates. Gut. PMID 27609830 DOI: 10.1136/Gutjnl-2016-312232  0.64
2016 Alger SJ, Larget BR, Riters LV. A novel statistical method for behaviour sequence analysis and its application to birdsong Animal Behaviour. 116: 181-193. DOI: 10.1016/j.anbehav.2016.04.001  0.64
2015 Stenz N, Larget B, Baum DA, Ané C. Exploring tree-like and non-tree-like patterns using genome sequences: An example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Systematic Biology. PMID 26117705 DOI: 10.1093/Sysbio/Syv039  0.64
2015 Murfin KE, Lee MM, Klassen JL, McDonald BR, Larget B, Forst S, Stock SP, Currie CR, Goodrich-Blair H. Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts. Mbio. 6. PMID 26045536 DOI: 10.1128/Mbio.00076-15  0.64
2015 Wang Z, He Q, Larget B, Newton MA. A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis Annals of Applied Statistics. 9: 225-246. DOI: 10.1214/14-Aoas777  0.64
2015 Larget B. Bayesian Phylogenetics: Methods, Algorithms and Applications International Statistical Review. 83: 160-161. DOI: 10.1111/Insr.12095_1  0.64
2014 Posavi M, Gelembiuk GW, Larget B, Lee CE. Testing for beneficial reversal of dominance during salinity shifts in the invasive copepod Eurytemora affinis, and implications for the maintenance of genetic variation Evolution. 68: 3166-3183. PMID 25135455 DOI: 10.1111/Evo.12502  0.6
2014 Kim J, Larget B. Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees. Biometrics. 70: 683-94. PMID 24750097 DOI: 10.1111/Biom.12169  0.64
2013 Solomon CT, Bruesewitz DA, Richardson DC, Rose KC, Van de Bogert MC, Hanson PC, Kratz TK, Larget B, Adrian R, Leroux Babin B, Chiu CY, Hamilton DP, Gaiser EE, Hendricks S, Istvá V, et al. Ecosystem respiration: Drivers of daily variability and background respiration in lakes around the globe Limnology and Oceanography. 58: 849-866. DOI: 10.4319/Lo.2013.58.3.0849  0.64
2012 Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology. 61: 539-42. PMID 22357727 DOI: 10.1093/Sysbio/Sys029  0.64
2012 Correa R, Stanga J, Larget B, Roznowski A, Shu G, Dilkes B, Baum DA. An assessment of transgenomics as a tool for identifying genes involved in the evolutionary differentiation of closely related plant species. The New Phytologist. 193: 494-503. PMID 22077724 DOI: 10.1111/J.1469-8137.2011.03949.X  0.64
2012 Kim J, Anthony NM, Larget BR. A Bayesian method for estimating evolutionary history Bayesian Analysis. 7: 917-974. DOI: 10.1214/12-Ba732  0.64
2012 Nilsson E, Solomon CT, Wilson KA, Willis TV, Larget B, Vander Zanden MJ. Effects of an invasive crayfish on trophic relationships in north-temperate lake food webs Freshwater Biology. 57: 10-23. DOI: 10.1111/J.1365-2427.2011.02688.X  0.64
2011 Cafaro MJ, Poulsen M, Little AE, Price SL, Gerardo NM, Wong B, Stuart AE, Larget B, Abbot P, Currie CR. Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria. Proceedings. Biological Sciences / the Royal Society. 278: 1814-22. PMID 21106596 DOI: 10.1098/Rspb.2010.2118  0.64
2010 Aguerre MJ, Wattiaux MA, Hunt T, Larget BR. Effect of dietary crude protein on ammonia-N emission measured by herd nitrogen mass balance in a freestall dairy barn managed under farm-like conditions. Animal : An International Journal of Animal Bioscience. 4: 1390-400. PMID 22444659 DOI: 10.1017/S1751731110000248  0.64
2010 Larget BR, Kotha SK, Dewey CN, Ané C. BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics (Oxford, England). 26: 2910-1. PMID 20861028 DOI: 10.1093/Bioinformatics/Btq539  0.64
2009 White MA, Ané C, Dewey CN, Larget BR, Payseur BA. Fine-scale phylogenetic discordance across the house mouse genome. Plos Genetics. 5: e1000729. PMID 19936022 DOI: 10.1371/Journal.Pgen.1000729  0.64
2009 Luo R, Larget B. Modeling substitution and indel processes for AFLP marker evolution and phylogenetic inference Annals of Applied Statistics. 3: 222-248. DOI: 10.1214/08-Aoas212  0.64
2009 Zheng L, Ives AR, Garland T, Larget BR, Yu Y, Cao K. New multivariate tests for phylogenetic signal and trait correlations applied to ecophysiological phenotypes of nine Manglietia species Functional Ecology. 23: 1059-1069. DOI: 10.1111/J.1365-2435.2009.01596.X  0.64
2008 Huelsenbeck JP, Ané C, Larget B, Ronquist F. A Bayesian perspective on a non-parsimonious parsimony model. Systematic Biology. 57: 406-19. PMID 18570035 DOI: 10.1080/10635150802166046  0.64
2008 Lakner C, van der Mark P, Huelsenbeck JP, Larget B, Ronquist F. Efficiency of Markov chain Monte Carlo tree proposals in Bayesian phylogenetics. Systematic Biology. 57: 86-103. PMID 18278678 DOI: 10.1080/10635150801886156  0.64
2007 Ané C, Larget B, Baum DA, Smith SD, Rokas A. Bayesian estimation of concordance among gene trees. Molecular Biology and Evolution. 24: 412-26. PMID 17095535 DOI: 10.1093/Molbev/Msl170  0.64
2006 Ronquist F, Larget B, Huelsenbeck JP, Kadane JB, Simon D, van der Mark P. Comment on "Phylogenetic MCMC algorithms are misleading on mixtures of trees". Science (New York, N.Y.). 312: 367; author reply 36. PMID 16627724 DOI: 10.1126/Science.1123622  0.64
2005 Holder MT, Lewis PO, Swofford DL, Larget B. Hastings ratio of the LOCAL proposal used in Bayesian phylogenetics. Systematic Biology. 54: 961-5. PMID 16385776 DOI: 10.1080/10635150500354670  0.64
2004 Schloss PD, Larget BR, Handelsman J. Integration of microbial ecology and statistics: a test to compare gene libraries. Applied and Environmental Microbiology. 70: 5485-92. PMID 15345436 DOI: 10.1128/Aem.70.9.5485-5492.2004  0.64
2004 Huelsenbeck JP, Larget B, Alfaro ME. Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo. Molecular Biology and Evolution. 21: 1123-33. PMID 15034130 DOI: 10.1093/Molbev/Msh123  0.64
2002 Huelsenbeck JP, Larget B, Miller RE, Ronquist F. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology. 51: 673-88. PMID 12396583 DOI: 10.1080/10635150290102366  0.64
2001 Mizanur Rahman GM, Isenhour TL, Larget B, Greenlaw PD. Statistical analysis of DOE EML QAP data from 1982 to 1998. Journal of Chemical Information and Computer Sciences. 41: 1099-105. PMID 11604010 DOI: 10.1021/Ci0000934  0.64
2000 Huelsenbeck JP, Rannala B, Larget B. A Bayesian framework for the analysis of cospeciation. Evolution; International Journal of Organic Evolution. 54: 352-64. PMID 10937213 DOI: 10.1111/J.0014-3820.2000.Tb00039.X  0.64
1999 Larget B, Simon D. Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees Molecular Biology and Evolution. 16: 750-750. DOI: 10.1093/Oxfordjournals.Molbev.A026160  0.64
1992 Aldous D, Larget B. A tree-based scaling exponent for random cluster models Journal of Physics a: Mathematical and General. 25: L1065-L1069. DOI: 10.1088/0305-4470/25/17/009  0.64
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