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Mark R. Marten - Publications

Affiliations: 
1992-1994 Chemical Engineering North Carolina State University, Raleigh, NC 
 1994-1996 Pilot Plant Novozymes NA, Franklinton, NC 
 1996- Engineering, Chemical and Biochemical University of Maryland, Baltimore County, Baltimore, MD, United States 
Area:
Biochemical Engineering
Website:
https://cbee.umbc.edu/mark-marten/
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Spence RN, Huso W, Edwards H, Doan A, Reese S, Harris SD, Srivastava R, Marten MR. Aspergillus nidulans Septa Are Indispensable for Surviving Cell Wall Stress. Microbiology Spectrum. e0206321. PMID 35107348 DOI: 10.1128/spectrum.02063-21  0.781
2021 Reese S, Chelius C, Riekhof W, Marten MR, Harris SD. Micafungin-Induced Cell Wall Damage Stimulates Morphological Changes Consistent with Microcycle Conidiation in . Journal of Fungi (Basel, Switzerland). 7. PMID 34210108 DOI: 10.3390/jof7070525  0.8
2021 Reese S, Chelius C, Riekhof W, Marten MR, Harris SD. Micafungin-Induced Cell Wall Damage Stimulates Morphological Changes Consistent with Microcycle Conidiation in . Journal of Fungi (Basel, Switzerland). 7. PMID 34210108 DOI: 10.3390/jof7070525  0.8
2021 Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, ... ... Marten MR, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 1-382. PMID 33634751 DOI: 10.1080/15548627.2020.1797280  0.786
2020 Chelius C, Huso W, Reese S, Doan A, Lincoln S, Lawson K, Tran B, Purohit R, Glaros T, Srivastava R, Harris SD, Marten MR. Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in Aspergillus nidulans. Molecular & Cellular Proteomics : McP. 19: 1310-1329. PMID 33451506 DOI: 10.1074/mcp.RA119.001769  0.722
2020 Glaros T, Dhummakupt ES, Rizzo GM, McBride E, Carmany DO, Wright LKM, Forster JS, Renner JA, Moretz RW, Dorsey R, Marten MR, Huso W, Doan A, Dorsey CD, Phillips C, et al. Discovery of treatment for nerve agents targeting a new metabolic pathway. Archives of Toxicology. PMID 32720192 DOI: 10.1007/S00204-020-02820-4  0.423
2020 Chelius C, Huso W, Reese S, Doan A, Lincoln S, Lawson K, Tran B, Purohit R, Glaros T, Srivastava R, Harris S, Marten MR. Dynamic transcriptomic and phosphoproteomic analysis during cell wall stress in . Molecular & Cellular Proteomics : McP. PMID 32430394 DOI: 10.1074/Mcp.Ra119.001769  0.761
2020 Mattos EC, Silva LP, Valero C, de Castro PA, Dos Reis TF, Ribeiro LFC, Marten MR, Silva-Rocha R, Westmann C, da Silva CHTP, Taft CA, Al-Furaiji N, Bromley M, Mortensen UH, Benz JP, et al. The Aspergillus fumigatus Phosphoproteome Reveals Roles of High-Osmolarity Glycerol Mitogen-Activated Protein Kinases in Promoting Cell Wall Damage and Caspofungin Tolerance. Mbio. 11. PMID 32019798 DOI: 10.1128/Mbio.02962-19  0.824
2019 Ribeiro LFC, Chelius C, Boppidi KR, Naik NS, Hossain S, Ramsey JJJ, Kumar J, Ribeiro LF, Ostermeier M, Tran B, Ah Goo Y, de Assis LJ, Ulas M, Bayram O, Goldman GH, ... ... Marten MR, et al. Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation. Mbio. 10. PMID 31040248 DOI: 10.1128/Mbio.02825-18  0.774
2019 Chelius CL, Ribeiro LFC, Huso W, Kumar J, Lincoln S, Tran B, Ah Goo Y, Srivastava R, Harris SD, Marten MR. Phosphoproteomic and transcriptomic analyses reveal multiple functions for Aspergillus nidulans MpkA independent of cell wall stress. Fungal Genetics and Biology : Fg & B. PMID 30639305 DOI: 10.1016/J.Fgb.2019.01.003  0.799
2018 Boppidi KR, Ribeiro LFC, Iambamrung S, Nelson SM, Wang Y, Momany M, Richardson EA, Lincoln S, Srivastava R, Harris SD, Marten MR. Altered secretion patterns and cell wall organization caused by loss of PodB function in the filamentous fungus Aspergillus nidulans. Scientific Reports. 8: 11433. PMID 30061727 DOI: 10.1038/S41598-018-29615-Z  0.795
2017 Islam N, Hossain KG, Ross JM, Marten MR. Blood Serum Affects Polysaccharide Production and Surface Protein Expression in . Advances in Biotechnology & Microbiology (Newbury, Calif.). 2. PMID 29863159 DOI: 10.19080/ARGH.2017.02.555589  0.572
2017 Quintanilla D, Chelius C, Iambamrung S, Nelson S, Thomas D, Gernaey KV, Marten MR. A fast and simple method to estimate relative, hyphal tensile-strength of filamentous fungi used to assess the effect of autophagy. Biotechnology and Bioengineering. PMID 29135022 DOI: 10.1002/Bit.26490  0.783
2017 Ribeiro LF, Chelius CL, Harris SD, Marten MR. Insights Regarding Fungal Phosphoproteomic Analysis. Fungal Genetics and Biology : Fg & B. PMID 28288883 DOI: 10.1016/J.Fgb.2017.03.003  0.796
2015 Islam N, Ross JM, Marten MR. Proteome Analyses of Staphylococcus aureus Biofilm at Elevated Levels of NaCl. Clinical Microbiology (Los Angeles, Calif.). 4. PMID 26973848 DOI: 10.4172/2327-5073.1000219  0.622
2014 Ramsubramaniam N, Harris SD, Marten MR. The phosphoproteome of Aspergillus nidulans reveals functional association with cellular processes involved in morphology and secretion. Proteomics. 14: 2454-9. PMID 25116090 DOI: 10.1002/Pmic.201400063  0.786
2014 Islam N, Kim Y, Ross JM, Marten MR. Proteomic analysis of Staphylococcus aureus biofilm cells grown under physiologically relevant fluid shear stress conditions. Proteome Science. 12: 21. PMID 24855455 DOI: 10.1186/1477-5956-12-21  0.707
2013 Ramsubramaniam N, Tao F, Li S, Marten MR. Cost-effective isobaric tagging for quantitative phosphoproteomics using DiART reagents. Molecular Biosystems. 9: 2981-7. PMID 24129742 DOI: 10.1039/C3Mb70358D  0.77
2013 Ramsubramaniam N, Tao F, Li S, Marten MR. Novel and cost-effective 6-plex isobaric tagging reagent, DiART, is effective for identification and relative quantification of complex protein mixtures using PQD fragmentation. Journal of Mass Spectrometry : Jms. 48: 1032-41. PMID 24078244 DOI: 10.1002/Jms.3249  0.778
2012 Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, ... ... Marten MR, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 8: 445-544. PMID 22966490 DOI: 10.4161/Auto.19496  0.781
2011 Kim Y, Islam N, Moss BJ, Nandakumar MP, Marten MR. Autophagy induced by rapamycin and carbon-starvation have distinct proteome profiles in Aspergillus nidulans. Biotechnology and Bioengineering. 108: 2705-15. PMID 21618477 DOI: 10.1002/Bit.23223  0.806
2011 Sripathineni U, Moss BJ, Zhao L, Roberson RW, Schaefer D, Marten MR. Effect of Rapamycin on Filamentous Fungal Cell Walls Biophysical Journal. 100: 484a. DOI: 10.1016/J.Bpj.2010.12.2840  0.773
2010 Marten MR, Seo JH. Localization of cloned invertase in Saccharomyces cerevisiae directed by the SUC2 and MFalpha1 signal sequences. Biotechnology and Bioengineering. 34: 1133-9. PMID 18588210 DOI: 10.1002/Bit.260340903  0.603
2009 Garcia JR, Cha HJ, Rao G, Marten MR, Bentley WE. Microbial nar-GFP cell sensors reveal oxygen limitations in highly agitated and aerated laboratory-scale fermentors. Microbial Cell Factories. 8: 6. PMID 19146688 DOI: 10.1186/1475-2859-8-6  0.367
2009 Pollack JK, Harris SD, Marten MR. Autophagy in filamentous fungi. Fungal Genetics and Biology : Fg & B. 46: 1-8. PMID 19010432 DOI: 10.1016/J.Fgb.2008.10.010  0.796
2008 Zustiak MP, Pollack JK, Marten MR, Betenbaugh MJ. Feast or famine: autophagy control and engineering in eukaryotic cell culture. Current Opinion in Biotechnology. 19: 518-26. PMID 18725292 DOI: 10.1016/J.Copbio.2008.07.007  0.802
2008 Moss BJ, Kim Y, Nandakumar MP, Marten MR. Quantifying metabolic activity of filamentous fungi using a colorimetric XTT assay. Biotechnology Progress. 24: 780-3. PMID 18386938 DOI: 10.1021/Bp070334T  0.779
2008 Kim Y, Nandakumar MP, Marten MR. The state of proteome profiling in the fungal genus Aspergillus. Briefings in Functional Genomics & Proteomics. 7: 87-94. PMID 18187513 DOI: 10.1093/Bfgp/Elm031  0.809
2008 Pollack JK, Li ZJ, Marten MR. Fungal mycelia show lag time before re-growth on endogenous carbon. Biotechnology and Bioengineering. 100: 458-65. PMID 18183629 DOI: 10.1002/Bit.21779  0.774
2008 Rathore A, Wang W, Chen W, Marten M. American Chemical Society: Division of Biochemical Technology (BIOT) Biotechnology Progress. 24: 487-487. DOI: 10.1021/Bp080141L  0.314
2007 Kim Y, Nandakumar MP, Marten MR. Proteomics of filamentous fungi. Trends in Biotechnology. 25: 395-400. PMID 17681627 DOI: 10.1016/J.Tibtech.2007.07.008  0.806
2007 Kim Y, Nandakumar MP, Marten MR. Proteome map of Aspergillus nidulans during osmoadaptation. Fungal Genetics and Biology : Fg & B. 44: 886-95. PMID 17258477 DOI: 10.1016/J.Fgb.2006.12.001  0.812
2006 Potra FA, Liu X, Seillier-Moiseiwitsch F, Roy A, Hang Y, Marten MR, Raman B, Whisnant C. Protein image alignment via piecewise affine transformations. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 614-30. PMID 16706715 DOI: 10.1089/Cmb.2006.13.614  0.743
2006 Nandakumar MP, Cheung A, Marten MR. Proteomic analysis of extracellular proteins from Escherichia coli W3110. Journal of Proteome Research. 5: 1155-61. PMID 16674104 DOI: 10.1021/Pr050401J  0.79
2006 Vallejos JR, Kostov Y, Ram A, French JA, Marten MR, Rao G. Optical analysis of liquid mixing in a minibioreactor. Biotechnology and Bioengineering. 93: 906-11. PMID 16317764 DOI: 10.1002/Bit.20785  0.339
2005 Vallejos JR, Kostov Y, Marten MR, Rao G. Confocal optical system: a novel noninvasive sensor to study mixing. Biotechnology Progress. 21: 1531-6. PMID 16209558 DOI: 10.1021/Bp050117X  0.33
2005 Raman B, Nandakumar MP, Muthuvijayan V, Marten MR. Proteome analysis to assess physiological changes in Escherichia coli grown under glucose-limited fed-batch conditions. Biotechnology and Bioengineering. 92: 384-92. PMID 16180237 DOI: 10.1002/Bit.20570  0.785
2005 Zhao L, Schaefer D, Xu H, Modi SJ, LaCourse WR, Marten MR. Elastic properties of the cell wall of Aspergillus nidulans studied with atomic force microscopy. Biotechnology Progress. 21: 292-9. PMID 15903268 DOI: 10.1021/Bp0497233  0.603
2005 Nandakumar R, Nandakumar MP, Marten MR, Ross JM. Proteome analysis of membrane and cell wall associated proteins from Staphylococcus aureus. Journal of Proteome Research. 4: 250-7. PMID 15822900 DOI: 10.1021/Pr049866K  0.785
2005 Zhao L, Schaefer D, Marten MR. Assessment of elasticity and topography of Aspergillus nidulans spores via atomic force microscopy. Applied and Environmental Microbiology. 71: 955-60. PMID 15691953 DOI: 10.1128/Aem.71.2.955-960.2005  0.559
2005 Bhargava S, Wenger KS, Rane K, Rising V, Marten MR. Effect of cycle time on fungal morphology, broth rheology, and recombinant enzyme productivity during pulsed addition of limiting carbon source. Biotechnology and Bioengineering. 89: 524-9. PMID 15643626 DOI: 10.1002/Bit.20355  0.789
2004 Muthuvijayan V, Marten MR. In silico reconstruction of nutrient-sensing signal transduction pathways in Aspergillus nidulans. In Silico Biology. 4: 605-31. PMID 15752076  0.761
2003 Davidson KM, Sushil S, Eggleton CD, Marten MR. Using computational fluid dynamics software to estimate circulation time distributions in bioreactors. Biotechnology Progress. 19: 1480-6. PMID 14524709 DOI: 10.1021/Bp025580D  0.387
2003 Bhargava S, Wenger KS, Marten MR. Pulsed feeding during fed-batch Aspergillus oryzae fermentation leads to improved oxygen mass transfer. Biotechnology Progress. 19: 1091-4. PMID 12790687 DOI: 10.1021/Bp025694P  0.774
2003 Nandakumar MP, Shen J, Raman B, Marten MR. Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via naOH for two-dimensional electrophoresis. Journal of Proteome Research. 2: 89-93. PMID 12643547 DOI: 10.1021/Pr025541X  0.787
2003 Bhargava S, Wenger KS, Marten MR. Pulsed addition of limiting-carbon during Aspergillus oryzae fermentation leads to improved productivity of a recombinant enzyme. Biotechnology and Bioengineering. 82: 111-7. PMID 12569630 DOI: 10.1002/Bit.10548  0.78
2003 Bhargava S, Nandakumar MP, Roy A, Wenger KS, Marten MR. Pulsed feeding during fed-batch fungal fermentation leads to reduced viscosity without detrimentally affecting protein expression. Biotechnology and Bioengineering. 81: 341-7. PMID 12474257 DOI: 10.1002/Bit.10481  0.785
2003 Roy A, Seillier-Moiseiwitsch F, Lee KR, Hang Y, Marten M, Raman B. Analyzing Two-Dimensional Gel Images Chance. 16: 13-18. DOI: 10.1080/09332480.2003.10554869  0.324
2002 Nandakumar MP, Marten MR. Comparison of lysis methods and preparation protocols for one- and two-dimensional electrophoresis of Aspergillus oryzae intracellular proteins. Electrophoresis. 23: 2216-22. PMID 12210225 DOI: 10.1002/1522-2683(200207)23:14<2216::Aid-Elps2216>3.0.Co;2-Y  0.78
2002 Raman B, Cheung A, Marten MR. Quantitative comparison and evaluation of two commercially available, two-dimensional electrophoresis image analysis software packages, Z3 and Melanie. Electrophoresis. 23: 2194-202. PMID 12210223 DOI: 10.1002/1522-2683(200207)23:14<2194::Aid-Elps2194>3.0.Co;2-#  0.754
2002 Li ZJ, Shukla V, Wenger KS, Fordyce AP, Pedersen AG, Marten MR. Effects of increased impeller power in a production-scale Aspergillus oryzae fermentation. Biotechnology Progress. 18: 437-44. PMID 12052056 DOI: 10.1021/Bp020023C  0.558
2002 Li ZJ, Shukla V, Wenger K, Fordyce A, Pedersen AG, Marten M. Estimation of hyphal tensile strength in production-scale Aspergillus oryzae fungal fermentations. Biotechnology and Bioengineering. 77: 601-13. PMID 11807755 DOI: 10.1002/Bit.10209  0.578
2002 Li ZJ, Bhargava S, Marten MR. Measurements of the fragmentation rate constant imply that the tensile strength of fungal hyphae can change significantly during growth Biotechnology Letters. 24: 1-7. DOI: 10.1023/A:1013848325193  0.563
2002 Marten MR, Park TH, Nagamune T. Biological systems engineering: An overview Acs Symposium Series. 830: 1-6.  0.258
2001 Shanklin T, Roper K, Yegneswaran PK, Marten MR. Selection of bioprocess simulation software for industrial applications. Biotechnology and Bioengineering. 72: 483-9. PMID 11180068 DOI: 10.1002/1097-0290(20010220)72:4<483::Aid-Bit1010>3.0.Co;2-3  0.736
2000 Li ZJ, Shukla V, Fordyce AP, Pedersen AG, Wenger KS, Marten MR. Microbial dynamics in an extractive membrane bioreactor exposed to an alternating sequence of organic compounds Biotechnology and Bioengineering. 70: 313-322. PMID 10992235 DOI: 10.1002/1097-0290(20001105)70:3<313::Aid-Bit8>3.0.Co;2-R  0.306
1999 Marten MR, Han NS, Park JB, Seo JH. Analysis of secretion behavior of human lysozyme from recombinant Saccharomyces cerevisiae Journal of Microbiology and Biotechnology. 9: 576-581.  0.341
1997 Velkovska S, Marten MR, Ollis DF. Kinetic model for batch cellulase production by Trichoderma reesei RUT C30 Journal of Biotechnology. 54: 83-94. PMID 9195752 DOI: 10.1016/S0168-1656(97)01669-6  0.592
1996 Marten MR, Velkovska S, Khan SA, Ollis DF. Rheological, mass transfer, and mixing characterization of cellulase- producing Trichoderma reesei suspensions Biotechnology Progress. 12: 602-611. DOI: 10.1021/Bp950066B  0.643
1995 Marten MR, Chung BH, Seo JH. Effects of temperature and cycloheximide on secretion of cloned invertase from recombinant Saccharomyces cerevisiae. Biotechnology and Bioengineering. 46: 627-30. PMID 18623358 DOI: 10.1002/Bit.260460616  0.597
1995 Marten MR, Velkovska S, Khan SA, Ollis DF. Steady and dynamic shear characterization of cellulase-producing Trichoderma reesei suspensions Applied Biochemistry and Biotechnology. 51: 319-328. DOI: 10.1007/Bf02933435  0.624
1989 Marten M, Seo J. A method for fractionation of cloned protein in recombinantSaccharomyces cerevisiae Biotechnology Techniques. 3: 325-328. DOI: 10.1007/Bf01875630  0.476
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