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Igor V. Pivkin, Ph.D. - Publications

Affiliations: 
2006 Brown University, Providence, RI 
Area:
Biomedical Engineering
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Lykov K, Nematbakhsh Y, Shang M, Lim CT, Pivkin IV. Probing eukaryotic cell mechanics via mesoscopic simulations. Plos Computational Biology. 13: e1005726. PMID 28922399 DOI: 10.1371/Journal.Pcbi.1005726  0.404
2016 Peter EK, Pivkin IV, Shea JE. A canonical replica exchange molecular dynamics implementation with normal pressure in each replica. The Journal of Chemical Physics. 145: 044903. PMID 27475393 DOI: 10.1063/1.4958325  0.339
2016 Pivkin IV, Peng Z, Karniadakis GE, Buffet PA, Dao M, Suresh S. Biomechanics of red blood cells in human spleen and consequences for physiology and disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 27354532 DOI: 10.1073/Pnas.1606751113  0.545
2016 Peter EK, Shea JE, Pivkin IV. Coarse kMC-based replica exchange algorithms for the accelerated simulation of protein folding in explicit solvent. Physical Chemistry Chemical Physics : Pccp. PMID 27111190 DOI: 10.1039/C5Cp06867C  0.329
2015 Peter EK, Lykov K, Pivkin IV. A polarizable coarse-grained protein model for dissipative particle dynamics. Physical Chemistry Chemical Physics : Pccp. 17: 24452-61. PMID 26339692 DOI: 10.1039/C5Cp03479E  0.384
2015 Lykov K, Li X, Lei H, Pivkin IV, Karniadakis GE. Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees. Plos Computational Biology. 11: e1004410. PMID 26317829 DOI: 10.1371/Journal.Pcbi.1004410  0.615
2015 Lykov K, Li X, Lei H, Pivkin IV, Karniadakis GE. Snaphot for simulation of the blood flow in part of arterial network with three inlets and multiple outlets. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1004410.G007  0.546
2015 Lykov K, Li X, Lei H, Pivkin IV, Karniadakis GE. Effect of bifurcation angle on particle recovery efficiency. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1004410.G006  0.489
2015 Lykov K, Li X, Lei H, Pivkin IV, Karniadakis GE. Verification of the accuracy of the proposed method. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1004410.G003  0.411
2015 Lykov K, Li X, Lei H, Pivkin IV, Karniadakis GE. Schematic illustration of the computational domain of an open system. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1004410.G002  0.423
2015 Lykov K, Li X, Lei H, Pivkin IV, Karniadakis GE. Simulation of blood flow in a microvascular bifurcation using the proposed open boundary conditions. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1004410.G001  0.568
2015 Peng Z, Pivkin I, Dao M, Karniadakis G. Modeling Transmigration of Malaria Infected Red Blood Cells through Inter-Endothelial Slits in Human Spleens using Dissipative Particle Dynamics Biophysical Journal. 108: 458a. DOI: 10.1016/J.Bpj.2014.11.2499  0.554
2014 Peter EK, Pivkin IV. A polarizable coarse-grained water model for dissipative particle dynamics. The Journal of Chemical Physics. 141: 164506. PMID 25362324 DOI: 10.1063/1.4899317  0.376
2014 Cruz-Chu ER, Malafeev A, Pajarskas T, Pivkin IV, Koumoutsakos P. Structure and response to flow of the glycocalyx layer. Biophysical Journal. 106: 232-43. PMID 24411255 DOI: 10.1016/J.Bpj.2013.09.060  0.363
2014 Peng Z, Pivkin IV, Li X, Karniadakis GE, Dao M. Two-Component Dissipative Particle Dynamics Model of Red Blood Cells Biophysical Journal. 106: 573a. DOI: 10.1016/J.Bpj.2013.11.3179  0.612
2013 Peng Z, Li X, Pivkin IV, Dao M, Karniadakis GE, Suresh S. Lipid bilayer and cytoskeletal interactions in a red blood cell. Proceedings of the National Academy of Sciences of the United States of America. 110: 13356-61. PMID 23898181 DOI: 10.1073/Pnas.1311827110  0.575
2013 Li X, Pivkin IV, Liang H. Hydrodynamic effects on flow-induced polymer translocation through a microfluidic channel Polymer (United Kingdom). 54: 4309-4317. DOI: 10.1016/J.Polymer.2013.06.022  0.407
2012 Peng Z, Pivkin I, Dao M. Multiscale Simulation of Malaria-Infected Erythrocytes and Spherocytes of Hereditary Spherocytosis Passing Endothelial Slits in the Spleen Biophysical Journal. 102: 563a. DOI: 10.1016/J.Bpj.2011.11.3066  0.508
2012 Fedosov D, Pivkin I, Pan W, Dao M, Caswell B, Karniadakis GE. Multiscale modelling of hematologic disorders Modeling, Simulation and Applications. 5: 289-331. DOI: 10.1007/978-88-470-1935-5_10  0.669
2011 Bow H, Pivkin IV, Diez-Silva M, Goldfless SJ, Dao M, Niles JC, Suresh S, Han J. A microfabricated deformability-based flow cytometer with application to malaria. Lab On a Chip. 11: 1065-73. PMID 21293801 DOI: 10.1039/C0Lc00472C  0.382
2011 Quinn DJ, Pivkin I, Wong SY, Chiam KH, Dao M, Karniadakis GE, Suresh S. Combined simulation and experimental study of large deformation of red blood cells in microfluidic systems. Annals of Biomedical Engineering. 39: 1041-50. PMID 21240637 DOI: 10.1007/S10439-010-0232-Y  0.572
2010 Pivkin IV, Caswell B, Karniadakis GE. Dissipative particle dynamics Reviews in Computational Chemistry. 27: 85-110. DOI: 10.1002/9780470890905.ch2  0.453
2009 Pivkin I, Richardson P, Karniadakis G. Effect of red blood cells on platelet aggregation. Ieee Engineering in Medicine and Biology Magazine : the Quarterly Magazine of the Engineering in Medicine & Biology Society. 28: 32-7. PMID 19349249 DOI: 10.1109/Memb.2009.931788  0.458
2009 Li X, Pivkin IV, Liang H, Karniadakis GE. Shape transformations of membrane vesicles from amphiphilic triblock copolymers: A dissipative particle dynamics simulation study Macromolecules. 42: 3195-3200. DOI: 10.1021/Ma9000918  0.522
2008 Pivkin IV, Karniadakis GE. Accurate coarse-grained modeling of red blood cells. Physical Review Letters. 101: 118105. PMID 18851338 DOI: 10.1103/Physrevlett.101.118105  0.569
2008 Pan W, Pivkin IV, Karniadakis GE. Single-particle hydrodynamics in DPD: A new formulation Epl. 84. DOI: 10.1209/0295-5075/84/10012  0.569
2008 Fedosov DA, Pivkin IV, Karniadakis GE. Velocity limit in DPD simulations of wall-bounded flows Journal of Computational Physics. 227: 2540-2559. DOI: 10.1016/J.Jcp.2007.11.009  0.693
2006 Pivkin IV, Richardson PD, Karniadakis G. Blood flow velocity effects and role of activation delay time on growth and form of platelet thrombi. Proceedings of the National Academy of Sciences of the United States of America. 103: 17164-9. PMID 17085579 DOI: 10.1073/Pnas.0608546103  0.532
2006 Pivkin IV, Karniadakis GE. Controlling density fluctuations in wall-bounded dissipative particle dynamics systems. Physical Review Letters. 96: 206001. PMID 16803187 DOI: 10.1103/Physrevlett.96.206001  0.576
2006 Pivkin IV, Karniadakis GE. Coarse-graining limits in open and wall-bounded dissipative particle dynamics systems. The Journal of Chemical Physics. 124: 184101. PMID 16709091 DOI: 10.1063/1.2191050  0.544
2006 Richardson PD, Pivkin IV, Karniadakis GE, Laidlaw DH. Blood flow at arterial branches: Complexities to resolve for the angioplasty suite Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3993: 538-545. DOI: 10.1007/11758532_71  0.454
2005 Keaveny EE, Pivkin IV, Maxey M, Em Karniadakis G. A comparative study between dissipative particle dynamics and molecular dynamics for simple- and complex-geometry flows. The Journal of Chemical Physics. 123: 104107. PMID 16178589 DOI: 10.1063/1.2018635  0.487
2005 Pivkin IV, Richardson PD, Laidlaw DH, Karniadakis GE. Combined effects of pulsatile flow and dynamic curvature on wall shear stress in a coronary artery bifurcation model. Journal of Biomechanics. 38: 1283-90. PMID 15863113 DOI: 10.1016/J.Jbiomech.2004.06.015  0.549
2005 Pivkin IV, Karniadakis GE. A new method to impose no-slip boundary conditions in dissipative particle dynamics Journal of Computational Physics. 207: 114-128. DOI: 10.1016/J.Jcp.2005.01.006  0.572
2005 Pivkin IV, Hueso E, Weinstein R, Laidlaw DH, Swartz S, Karniadakis GE. Simulation and visualization of air flow around bat wings during flight Lecture Notes in Computer Science. 3515: 689-694.  0.438
2004 Sobel JS, Forsberg AS, Laidlaw DH, Zeleznik RC, Keefe DF, Pivkin I, Karniadakis GE, Richardson P, Swartz S. Particle flurries: synoptic 3D pulsatile flow visualization. Ieee Computer Graphics and Applications. 24: 76-85. PMID 15387231 DOI: 10.1109/Mcg.2004.1274065  0.509
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