Brooke L. Fridley, Ph.D. - Related publications

2003 Iowa State University, Ames, IA, United States 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Sun R, Lin X. Genetic Variant Set-Based Tests Using the Generalized Berk-Jones Statistic with Application to a Genome-Wide Association Study of Breast Cancer. Journal of the American Statistical Association. 115: 1079-1091. PMID 33041403 DOI: 10.1080/01621459.2019.1660170   
2020 Pan X, Li M, Huang L, Mo D, Liang Y, Huang Z, Zhu B, Fang M. , , and Gene Polymorphisms on Hepatocellular Carcinoma Susceptibility in the Chinese Population. Biomed Research International. 2020: 2918517. PMID 33062675 DOI: 10.1155/2020/2918517   
2020 Lu G, Zhou B, He Y, Liu H, Luo S, Amos CI, Lee JE, Yang K, Qureshi A, Han J, Wei Q. Novel genetic variants of and of the endosome-related pathway predict cutaneous melanoma-specific survival. American Journal of Cancer Research. 10: 3382-3394. PMID 33163277   
2020 Jiang K, Du F, Lv L, Zhuo H, Xu T, Peng L, Chen Y, Li L, Zhang J. Genetic Fine Mapping and Genomic Annotation Defines Causal Mechanisms at A Novel Colorectal Cancer Susceptibility Locus in Han Chinese. Journal of Cancer. 11: 6841-6849. PMID 33123275 DOI: 10.7150/jca.47189   
2020 Guo X, Lin W, Wen W, Huyghe J, Bien S, Cai Q, Harrison T, Chen Z, Qu C, Bao J, Long J, Yuan Y, Wang F, Bai M, Abecasis GR, et al. Identifying novel susceptibility genes for colorectal cancer risk from a transcriptome-wide association study of 125,478 subjects. Gastroenterology. PMID 33058866 DOI: 10.1053/j.gastro.2020.08.062   
2020 Brandão A, Paulo P, Maia S, Pinheiro M, Peixoto A, Cardoso M, Silva MP, Santos C, Eeles RA, Kote-Jarai Z, Muir K, Ukgpcs Collaborators, Schleutker J, Wang Y, Pashayan N, et al. The Variant C.349A>G Is Associated with Prostate Cancer Risk and Carriers Share a Common Ancestor. Cancers. 12. PMID 33158149 DOI: 10.3390/cancers12113254   
2020 Ning XH, Qi YY, Wang FX, Li SC, Jia ZK, Yang JJ. A Three Protein-Coding Gene Prognostic Model Predicts Overall Survival in Bladder Cancer Patients. Biomed Research International. 2020: 7272960. PMID 33150179 DOI: 10.1155/2020/7272960   
2020 Iacoangeli A, Lin T, Al Khleifat A, Jones AR, Opie-Martin S, Coleman JRI, Shatunov A, Sproviero W, Williams KL, Garton F, Restuadi R, Henders AK, Mather KA, Needham M, Mathers S, et al. Genome-wide Meta-analysis Finds the ACSL5-ZDHHC6 Locus Is Associated with ALS and Links Weight Loss to the Disease Genetics. Cell Reports. 33: 108323. PMID 33113361 DOI: 10.1016/j.celrep.2020.108323   
2020 Wang X, Hayes JE, Xu X, Gao X, Mehta D, Lilja HG, Klein RJ. Validation of prostate cancer risk variants rs10993994 and rs7098889 by CRISPR/Cas9 mediated genome editing. Gene. 145265. PMID 33122083 DOI: 10.1016/j.gene.2020.145265   
2020 Grasel RS, Felicio PS, de Paula AE, Campacci N, Garcia FAO, de Andrade ES, Evangelista AF, Fernandes GC, Sabato CDS, De Marchi P, Souza CP, de Paula CAA, Torrezan GT, Galvão HCR, Carraro DM, et al. Using Co-segregation and Loss of Heterozygosity Analysis to Define the Pathogenicity of Unclassified Variants in Hereditary Breast Cancer Patients. Frontiers in Oncology. 10: 571330. PMID 33134171 DOI: 10.3389/fonc.2020.571330   
2020 León-Reyes G, Rivera-Paredez B, López JCF, Ramírez-Salazar EG, Aquino-Gálvez A, Gallegos-Carrillo K, Denova-Gutiérrez E, Salmerón J, Velázquez-Cruz R. The Variant rs1784042 of the Gene is Associated with Metabolic Syndrome through Low HDL-c Levels in a Mexican Population. Genes. 11. PMID 33066450 DOI: 10.3390/genes11101192   
2020 Yuan L, Liu Z, Wei G, Yang P, Hu XE, Qu F, Lu J, He X, Bao G. Genetic polymorphisms in folate-metabolizing genes associated with gastric cancer prognosis in northwest China subjects. Journal of Cancer. 11: 6413-6420. PMID 33033524 DOI: 10.7150/jca.46978   
2020 Komaravalli PL, Rani S V, Dalal A, Jahan P. Association analysis of FMR1 genetic variants and primary ovarian insufficiency in South Indian women with a novel approach of CGG repeats classification. European Journal of Medical Genetics. 63: 104081. PMID 33039683 DOI: 10.1016/j.ejmg.2020.104081   
2020 Zhang H, Deng S, Zhang J, Zhu G, Zhou J, Ye W, Wang Q, Wang Y, Zou B, Zhang P, Zhang S, Lang J, Lu S. Single nucleotide polymorphisms within NFKBIA are associated with nasopharyngeal carcinoma susceptibility in Chinese Han population. Cytokine. 155356. PMID 33160813 DOI: 10.1016/j.cyto.2020.155356   
2020 Manjunath M, Yan J, Youn Y, Drucker KL, Kollmeyer TM, McKinney AM, Zazubovich V, Zhang Y, Costello JF, Eckel-Passow J, Selvin PR, Jenkins RB, Song JS. Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. Neuro-Oncology. PMID 33130899 DOI: 10.1093/neuonc/noaa248   
2020 Jiang L, Li S, Yuan M, Ma L, Lin Y, Zhu W, Du H, Wang M, Chen T, Zhu L. Genetic variants in the Folic acid Metabolic Pathway Genes predict outcomes of metastatic Colorectal Cancer patients receiving first-line Chemotherapy. Journal of Cancer. 11: 6507-6515. PMID 33046972 DOI: 10.7150/jca.44580   
2020 Nakamura R, Misawa K, Tohnai G, Nakatochi M, Furuhashi S, Atsuta N, Hayashi N, Yokoi D, Watanabe H, Watanabe H, Katsuno M, Izumi Y, Kanai K, Hattori N, Morita M, et al. A multi-ethnic meta-analysis identifies novel genes, including ACSL5, associated with amyotrophic lateral sclerosis. Communications Biology. 3: 526. PMID 32968195 DOI: 10.1038/s42003-020-01251-2   
2020 Huang T, Braun D, Lynch HT, Parmigiani G. Variation in cancer risk among families with genetic susceptibility. Genetic Epidemiology. PMID 33030277 DOI: 10.1002/gepi.22366   
2020 Gialluisi A, Andlauer TFM, Mirza-Schreiber N, Moll K, Becker J, Hoffmann P, Ludwig KU, Czamara D, Pourcain BS, Honbolygó F, Tóth D, Csépe V, Huguet G, Chaix Y, Iannuzzi S, et al. Genome-wide association study reveals new insights into the heritability and genetic correlates of developmental dyslexia. Molecular Psychiatry. PMID 33057169 DOI: 10.1038/s41380-020-00898-x   
2020 Gao W, Cheng L, He S, Li W, Zhou C, Zhou B, Liu J, Xu J, Yu X, Zhu H. Multiomics integrative analysis for gene signatures and prognostic values of mA regulators in pancreatic adenocarcinoma: a retrospective study in The Cancer Genome Atlas project. Aging. 12. PMID 33082301 DOI: 10.18632/aging.103942   
2020 Cismaru AL, Rudin D, Ibañez L, Liakoni E, Bonadies N, Kreutz R, Carvajal A, Lucena MI, Martin J, Sancho Ponce E, Molokhia M, Eriksson N, EuDAC Collaborators, Krähenbühl S, Largiadèr CR, et al. Genome-Wide Association Study of Metamizole-Induced Agranulocytosis in European Populations. Genes. 11. PMID 33138277 DOI: 10.3390/genes11111275   
2020 Chen YX, Rong Y, Jiang F, Chen JB, Duan YY, Dong SS, Zhu DL, Chen H, Yang TL, Dai Z, Guo Y. An integrative multi-omics network-based approach identifies key regulators for breast cancer. Computational and Structural Biotechnology Journal. 18: 2826-2835. PMID 33133424 DOI: 10.1016/j.csbj.2020.10.001   
2020 Magotra A, Gupta ID, Ahmad T, Alex R. Polymorphism in DNA repair gene BRCA1 associated with clinical mastitis and production traits in indigenous dairy cattle. Research in Veterinary Science. 133: 194-201. PMID 33011602 DOI: 10.1016/j.rvsc.2020.09.013   
2020 Ali MW, Patro CPK, Zhu JJ, Dampier CH, Plummer SJ, Kuscu C, Adli M, Lau C, Lai RK, Casey G. A Functional Variant on 20q13.33 Related to Glioma Risk Alters Enhancer Activity and Modulates Expression of Multiple Genes. Human Mutation. PMID 33169458 DOI: 10.1002/humu.24134   
2020 Gorski M, Jung B, Li Y, Matias-Garcia PR, Wuttke M, Coassin S, Thio CHL, Kleber ME, Winkler TW, Wanner V, Chai JF, Chu AY, Cocca M, Feitosa MF, Ghasemi S, ... , ... , et al. Meta-analysis uncovers genome-wide significant variants for rapid kidney function decline. Kidney International. PMID 33137338 DOI: 10.1016/j.kint.2020.09.030   
2020 Fataki Asina O, Noyes H, Bucheton B, Ilboudo H, MacLeod A, Mumba Ngoyi D, . SNPs in IL4 and IFNG show no protective associations with human African trypanosomiasis in the Democratic Republic of the Congo: a case-control study. Aas Open Research. 3: 35. PMID 32964195 DOI: 10.12688/aasopenres.12999.1   
2020 Alqudah AM, Haile JK, Alomari DZ, Pozniak CJ, Kobiljski B, Börner A. Genome-wide and SNP network analyses reveal genetic control of spikelet sterility and yield-related traits in wheat. Scientific Reports. 10: 2098. PMID 32034248 DOI: 10.1038/s41598-020-59004-4   
2020 Rodriguez DA, Sanchez MI, Decatur CL, Correa ZM, Martin ER, Harbour JW. Impact of Genetic Ancestry on Prognostic Biomarkers in Uveal Melanoma. Cancers. 12. PMID 33142712 DOI: 10.3390/cancers12113208   
2020 Liu W, Li M, Zhang W, Zhou G, Wu X, Wang J, Lu Q, Zhao H. Leveraging functional annotation to identify genes associated with complex diseases. Plos Computational Biology. 16: e1008315. PMID 33137096 DOI: 10.1371/journal.pcbi.1008315   
2020 Owen KA, Price A, Ainsworth H, Aidukaitis BN, Bachali P, Catalina MD, Dittman JM, Howard TD, Kingsmore KM, Labonte AC, Marion MC, Robl RD, Zimmerman KD, Langefeld CD, Grammer AC, et al. Analysis of Trans-Ancestral SLE Risk Loci Identifies Unique Biologic Networks and Drug Targets in African and European Ancestries. American Journal of Human Genetics. PMID 33031749 DOI: 10.1016/j.ajhg.2020.09.007   
2020 Pavanello M, Chan IH, Ariff A, Pharoah PD, Gayther SA, Ramus SJ. Rare Germline Genetic Variants and the Risks of Epithelial Ovarian Cancer. Cancers. 12. PMID 33086730 DOI: 10.3390/cancers12103046   
2020 Han YG, Zeng Y, Huang YF, Huang DL, Peng P, Na RS. A nonsynonymous SNP within the gene is associated with litter size in Dazu black goats. Animal Biotechnology. 1-5. PMID 33151107 DOI: 10.1080/10495398.2020.1842750   
2020 Jung SY, Papp JC, Sobel EM, Pellegrini M, Yu H, Zhang ZF. Pro-inflammatory cytokine polymorphisms in ONECUT2 and HNF4A and primary colorectal carcinoma: a post genome-wide gene-lifestyle interaction study. American Journal of Cancer Research. 10: 2955-2976. PMID 33042629   
2020 Pierce SE, Booms A, Prahl J, van der Schans EJC, Tyson T, Coetzee GA. Post-GWAS knowledge gap: the how, where, and when. Npj Parkinson's Disease. 6: 23. PMID 32964108 DOI: 10.1038/s41531-020-00125-y   
2020 Kim YA, Sarto Basso R, Wojtowicz D, Liu AS, Hochbaum DS, Vandin F, Przytycka TM. Identifying Drug Sensitivity Subnetworks with NETPHIX. Iscience. 23: 101619. PMID 33089107 DOI: 10.1016/j.isci.2020.101619   
2020 Li F, Xu X, Xuan C, Chen WT. Association between interleukin-10 gene polymorphisms and risk of oral carcinoma: A meta-analysis. Histology and Histopathology. 18275. PMID 33119124 DOI: 10.14670/HH-18-275   
2020 Li F, Xu X, Xuan C, Chen WT. Association between interleukin-10 gene polymorphisms and risk of oral carcinoma: A meta-analysis. Histology and Histopathology. 18275. PMID 33119124 DOI: 10.14670/HH-18-275   
2020 Xu W, Tan CC, Cao XP, Tan L, . Association of Alzheimer's disease risk variants on the gene with PICALM expression, core biomarkers, and feature neurodegeneration. Aging. 12. PMID 33170153 DOI: 10.18632/aging.103814   
2020 Liu L, Zhou J, Chen CJ, Zhang J, Wen W, Tian J, Zhang Z, Gu Y. GWAS-Based Identification of New Loci for Milk Yield, Fat, and Protein in Holstein Cattle. Animals : An Open Access Journal From Mdpi. 10. PMID 33167458 DOI: 10.3390/ani10112048   
2020 Sun S, Dong B, Zou Q. Revisiting genome-wide association studies from statistical modelling to machine learning. Briefings in Bioinformatics. PMID 33126243 DOI: 10.1093/bib/bbaa263   
2020 Nguyen ND, Jin T, Wang D. Varmole: A biologically drop-connect deep neural network model for prioritizing disease risk variants and genes. Bioinformatics (Oxford, England). PMID 33031552 DOI: 10.1093/bioinformatics/btaa866   
2020 Torre-Fuentes L, Matías-Guiu JA, Pytel V, Montero-Escribano P, Maietta P, Álvarez S, Gómez-Pinedo U, Matías-Guiu J. Variants of genes encoding TNF receptors and ligands and proteins regulating TNF activation in familial multiple sclerosis. Cns Neuroscience & Therapeutics. PMID 32951330 DOI: 10.1111/cns.13456   
2020 Tudini E, Davidson AL, Dressel U, Andrews L, Antill Y, Crook A, Field M, Gattas M, Harris R, Kirk J, Pachter N, Salmon L, Susman R, Townshend S, Trainer AH, et al. Implementing gene curation for hereditary cancer susceptibility in Australia: achieving consensus on genes with clinical utility. Journal of Medical Genetics. PMID 33168572 DOI: 10.1136/jmedgenet-2020-107140   
2020 Brenner LN, Mercader JM, Robertson CC, Cole J, Chen L, Jacobs SBR, Rich SS, Florez JC. Analysis of Glucocorticoid-Related Genes Reveal as a New Candidate Gene for Type 2 Diabetes. Journal of the Endocrine Society. 4: bvaa121. PMID 33150273 DOI: 10.1210/jendso/bvaa121   
2020 Deutelmoser H, Lorenzo Bermejo J, Benner A, Weigl K, Park HA, Haffa M, Herpel E, Schneider M, Ulrich CM, Hoffmeister M, Chang-Claude J, Brenner H, Scherer D. Genotype-Based Gene Expression in Colon Tissue-Prediction Accuracy and Relationship with the Prognosis of Colorectal Cancer Patients. International Journal of Molecular Sciences. 21. PMID 33142733 DOI: 10.3390/ijms21218150   
2020 Lai E, Danner AL, Famula TR, Oberbauer AM. Genome-Wide Association Studies Reveal Susceptibility Loci for Digital Dermatitis in Holstein Cattle. Animals : An Open Access Journal From Mdpi. 10. PMID 33142934 DOI: 10.3390/ani10112009   
2020 Luyapan J, Ji X, Li S, Xiao X, Zhu D, Duell EJ, Christiani DC, Schabath MB, Arnold SM, Zienolddiny S, Brunnström H, Melander O, Thornquist MD, MacKenzie TA, Amos CI, et al. A new efficient method to detect genetic interactions for lung cancer GWAS. Bmc Medical Genomics. 13: 162. PMID 33126877 DOI: 10.1186/s12920-020-00807-9   
2020 Ruotsalainen SE, Partanen JJ, Cichonska A, Lin J, Benner C, Surakka I, , Reeve MP, Palta P, Salmi M, Jalkanen S, Ahola-Olli A, Palotie A, Salomaa V, Daly MJ, et al. An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease. European Journal of Human Genetics : Ejhg. PMID 33110245 DOI: 10.1038/s41431-020-00730-8   
2020 Loo SL, Ong A, Kyaw W, Thibaut LM, Lan R, Tanaka MM. A comparative examination of non-synonymous polymorphism counts in bacterial genomes. Applied and Environmental Microbiology. PMID 33097502 DOI: 10.1128/AEM.02002-20   
2020 Zhang Q, Cai Z, Lhomme M, Sahana G, Lesnik P, Guerin M, Fredholm M, Karlskov-Mortensen P. Inclusion of endophenotypes in a standard GWAS facilitate a detailed mechanistic understanding of genetic elements that control blood lipid levels. Scientific Reports. 10: 18434. PMID 33116219 DOI: 10.1038/s41598-020-75612-6