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Jianying Gu, Ph.D. - Publications

Affiliations: 
2003 Iowa State University, Ames, IA, United States 
Area:
Genetics, Molecular Biology
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Yu X, Zhang H, Lilburn TG, Cai H, Gu J, Korkmaz T, Wang Y. Transcriptomic and network analyses combine to identify genes that drive the red blood cell cycle of Plasmodium falciparum International Journal of Data Mining and Bioinformatics. 18: 179-195. DOI: 10.1504/Ijdmb.2017.087157  0.391
2017 Yu X, Lilburn TG, Cai H, Gu J, Korkmaz T, Wang Y. PageRank influence analysis of protein-protein association networks in the malaria parasite Plasmodium falciparum International Journal of Computational Biology and Drug Design. 10: 137-156. DOI: 10.1504/Ijcbdd.2017.083878  0.356
2015 Cai H, Lilburn TG, Hong C, Gu J, Kuang R, Wang Y. Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments. Bmc Systems Biology. 9: S1. PMID 26100579 DOI: 10.1186/1752-0509-9-S4-S1  0.368
2015 Yu X, Korkmaz T, Lilburn TG, Cai H, Gu J, Wang Y. Heavy path mining of protein-protein associations in the malaria parasite. Methods (San Diego, Calif.). PMID 25861922 DOI: 10.1016/J.Ymeth.2015.04.002  0.382
2013 Cai H, Hong C, Lilburn TG, Rodriguez AL, Chen S, Gu J, Kuang R, Wang Y. A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum. Bmc Bioinformatics. 14: S2. PMID 24267797 DOI: 10.1186/1471-2105-14-S12-S2  0.341
2012 Cai H, Zhou Z, Gu J, Wang Y. Comparative Genomics and Systems Biology of Malaria Parasites Plasmodium. Current Bioinformatics. 7. PMID 24298232 DOI: 10.2174/157489312803900965  0.335
2012 Cai H, Hong C, Gu J, Lilburn TG, Kuang R, Wang Y. Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum. Bmc Systems Biology. 6: S5. PMID 23282319 DOI: 10.1186/1752-0509-6-S3-S5  0.384
2012 Zhou Z, Gu J, Li YQ, Wang Y. Genome plasticity and systems evolution in Streptomyces. Bmc Bioinformatics. 13: S8. PMID 22759432 DOI: 10.1186/1471-2105-13-S10-S8  0.331
2011 Cai H, Kuang R, Gu J, Wang Y. Proteases in malaria parasites - a phylogenomic perspective. Current Genomics. 12: 417-27. PMID 22379395 DOI: 10.2174/138920211797248565  0.322
2011 Zhou Z, Gu J, Du YL, Li YQ, Wang Y. The -omics Era- Toward a Systems-Level Understanding of Streptomyces. Current Genomics. 12: 404-16. PMID 22379394 DOI: 10.2174/138920211797248556  0.313
2011 Coyne RS, Hannick L, Shanmugam D, Hostetler JB, Brami D, Joardar VS, Johnson J, Radune D, Singh I, Badger JH, Kumar U, Saier M, Wang Y, Cai H, Gu J, et al. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control. Genome Biology. 12: R100. PMID 22004680 DOI: 10.1186/Gb-2011-12-10-R100  0.327
2010 Cai H, Gu J, Wang Y. Core genome components and lineage specific expansions in malaria parasites plasmodium. Bmc Genomics. 11: S13. PMID 21143780 DOI: 10.1186/1471-2164-11-S3-S13  0.375
2010 Lilburn TG, Gu J, Cai H, Wang Y. Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins. Bmc Genomics. 11: 369. PMID 20537180 DOI: 10.1186/1471-2164-11-369  0.359
2009 Gu J, Wang Y, Lilburn T. A comparative genomics, network-based approach to understanding virulence in Vibrio cholerae. Journal of Bacteriology. 191: 6262-72. PMID 19666715 DOI: 10.1128/Jb.00475-09  0.381
2009 Gu J, Neary J, Cai H, Moshfeghian A, Rodriguez SA, Lilburn TG, Wang Y. Genomic and systems evolution in Vibrionaceae species. Bmc Genomics. 10: S11. PMID 19594870 DOI: 10.1186/1471-2164-10-S1-S11  0.386
2009 Kuang R, Gu J, Cai H, Wang Y. Improved prediction of malaria degradomes by supervised learning with SVM and profile kernel. Genetica. 136: 189-209. PMID 19057851 DOI: 10.1007/S10709-008-9336-9  0.353
2007 Zhou H, Gu J, Lamont SJ, Gu X. Evolutionary analysis for functional divergence of the toll-like receptor gene family and altered functional constraints. Journal of Molecular Evolution. 65: 119-23. PMID 17762905 DOI: 10.1007/S00239-005-0008-4  0.31
2007 Gu J, Neary JL, Sanchez M, Yu J, Lilburn TG, Wang Y. Genome evolution and functional divergence in Yersinia. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 37-49. PMID 16838303 DOI: 10.1002/Jez.B.21120  0.358
2006 Gu J, Li WH. Are GC-rich isochores vanishing in mammals? Gene. 385: 50-6. PMID 16987615 DOI: 10.1016/J.Gene.2006.03.026  0.353
2006 Gu X, Wang Y, Gu J, Velden KV, Xu D. Predicting Type-I (Rate-Shift) Functional Divergence of Protein Sequences and Applications in Functional Genomics Current Genomics. 7: 87-96. DOI: 10.2174/138920206777304623  0.313
2004 Zhang Z, Gu J, Gu X. How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? Trends in Genetics : Tig. 20: 403-7. PMID 15313547 DOI: 10.1016/J.Tig.2004.07.006  0.34
2004 Jiang C, Gu J, Chopra S, Gu X, Peterson T. Ordered origin of the typical two- and three-repeat Myb genes. Gene. 326: 13-22. PMID 14729259 DOI: 10.1016/J.Gene.2003.09.049  0.33
2003 Gu J, Gu X. Natural history and functional divergence of protein tyrosine kinases. Gene. 317: 49-57. PMID 14604791 DOI: 10.1016/S0378-1119(03)00696-6  0.358
2002 Gu X, Wang Y, Gu J. Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. Nature Genetics. 31: 205-9. PMID 12032571 DOI: 10.1038/Ng902  0.349
2002 Gu J, Wang Y, Gu X. Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes. Journal of Molecular Evolution. 54: 725-33. PMID 12029354 DOI: 10.1007/S00239-001-0072-3  0.315
2002 Gu X, Wang Y, Gu J, Velden KV. Evolutionary perspective for functional divergence of gene family and applications in functional genomics Current Genomics. 3: 201-211. DOI: 10.2174/1389202023350480  0.362
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