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Reed A. Cartwright, Ph.D. - Publications

Affiliations: 
Biology and Biochemistry University of Houston, Houston, TX, United States 
Area:
evolution, genetics, bioinformatics
Website:
http://scit.us/
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, et al. A community-maintained standard library of population genetic models. Elife. 9. PMID 32573438 DOI: 10.7554/Elife.54967  0.357
2020 Orr AJ, Padovan A, Kainer D, Külheim C, Bromham L, Bustos-Segura C, Foley W, Haff T, Hsieh JF, Morales-Suarez A, Cartwright RA, Lanfear R. A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant. Proceedings. Biological Sciences. 287: 20192364. PMID 32156194 DOI: 10.1098/Rspb.2019.2364  0.346
2019 Kurgan G, Sievert C, Flores A, Schneider A, Billings T, Panyon L, Morris C, Taylor E, Kurgan L, Cartwright R, Wang X. Parallel experimental evolution reveals a novel repressive control of GalP on xylose fermentation in Escherichia coli. Biotechnology and Bioengineering. PMID 31038200 DOI: 10.1002/Bit.27004  0.317
2018 Herman A, Brandvain Y, Weagley J, Jeffery WR, Keene AC, Kono TJY, Bilandžija H, Borowsky R, Espinasa L, O'Quin K, Ornelas-García CP, Yoshizawa M, Carlson B, Maldonado E, Gross JB, ... Cartwright RA, et al. The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus. Molecular Ecology. PMID 30252986 DOI: 10.1111/Mec.14877  0.372
2018 Winter DJ, Wu SH, Howell AA, Azevedo RBR, Zufall RA, Cartwright RA. accuMUlate: A mutation caller designed for mutation accumulation experiments. Bioinformatics (Oxford, England). PMID 29566129 DOI: 10.1093/Bioinformatics/Bty165  0.347
2017 Ashkenazy H, Levy Karin E, Mertens Z, Cartwright RA, Pupko T. SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm. Nucleic Acids Research. PMID 28460062 DOI: 10.1093/Nar/Gkx322  0.314
2017 Levy Karin E, Shkedy D, Ashkenazy H, Cartwright RA, Pupko T. Inferring rates and length-distributions of indels using approximate Bayesian computation. Genome Biology and Evolution. PMID 28453624 DOI: 10.1093/Gbe/Evx084  0.337
2017 Wu SH, Schwartz RS, Winter DJ, Conrad DF, Cartwright RA. Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions. Bioinformatics (Oxford, England). PMID 28334373 DOI: 10.1093/Bioinformatics/Btx133  0.378
2017 Cartwright RA, Schwartz RS, Merry AL, Howell MM. The importance of selection in the evolution of blindness in cavefish. Bmc Evolutionary Biology. 17: 45. PMID 28173751 DOI: 10.1186/S12862-017-0876-4  0.362
2016 Long H, Winter DJ, Chang AY, Sung W, Wu SH, Balboa M, Azevedo RB, Cartwright RA, Lynch M, Zufall RA. Low base-substitution mutation rate in the germline genome of the ciliate Tetrahymena thermophila. Genome Biology and Evolution. PMID 27635054 DOI: 10.1093/Gbe/Evw223  0.383
2016 Furstenau TN, Cartwright RA. The effect of the dispersal kernel on isolation-by-distance in a continuous population. Peerj. 4: e1848. PMID 27069794 DOI: 10.7717/Peerj.1848  0.3
2015 Winter DJ, Pacheco MA, Vallejo AF, Schwartz RS, Arevalo-Herrera M, Herrera S, Cartwright RA, Escalante AA. Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia. Plos Neglected Tropical Diseases. 9: e0004252. PMID 26709695 DOI: 10.1371/Journal.Pntd.0004252  0.342
2015 Schwartz RS, Harkins KM, Stone AC, Cartwright RA. A composite genome approach to identify phylogenetically informative data from next-generation sequencing. Bmc Bioinformatics. 16: 193. PMID 26062548 DOI: 10.1186/S12859-015-0632-Y  0.353
2013 Ramu A, Noordam MJ, Schwartz RS, Wuster A, Hurles ME, Cartwright RA, Conrad DF. DeNovoGear: de novo indel and point mutation discovery and phasing. Nature Methods. 10: 985-7. PMID 23975140 DOI: 10.1038/Nmeth.2611  0.378
2012 Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, et al. Comparative population genomics of maize domestication and improvement. Nature Genetics. 44: 808-11. PMID 22660546 DOI: 10.1038/Ng.2309  0.571
2012 Cartwright RA, Hussin J, Keebler JE, Stone EA, Awadalla P. A family-based probabilistic method for capturing de novo mutations from high-throughput short-read sequencing data. Statistical Applications in Genetics and Molecular Biology. 11. PMID 22499693 DOI: 10.2202/1544-6115.1713  0.407
2011 Conrad DF, Keebler JE, DePristo MA, Lindsay SJ, Zhang Y, Casals F, Idaghdour Y, Hartl CL, Torroja C, Garimella KV, Zilversmit M, Cartwright R, Rouleau GA, Daly M, Stone EA, et al. Variation in genome-wide mutation rates within and between human families. Nature Genetics. 43: 712-4. PMID 21666693 DOI: 10.1038/Ng.862  0.353
2011 Cartwright RA, Lartillot N, Thorne JL. History can matter: non-Markovian behavior of ancestral lineages. Systematic Biology. 60: 276-90. PMID 21398626 DOI: 10.1093/Sysbio/Syr012  0.626
2011 Cartwright RA, Graur D. The multiple personalities of Watson and Crick strands. Biology Direct. 6: 7. PMID 21303550 DOI: 10.1186/1745-6150-6-7  0.522
2011 Price N, Cartwright RA, Sabath N, Graur D, Azevedo RB. Neutral evolution of robustness in Drosophila microRNA precursors. Molecular Biology and Evolution. 28: 2115-23. PMID 21285032 DOI: 10.1093/Molbev/Msr029  0.563
2011 Cartwright RA. Bards, poets, and cliques: frequency-dependent selection and the evolution of language genes. Bulletin of Mathematical Biology. 73: 2201-12. PMID 21191662 DOI: 10.1007/S11538-010-9619-Z  0.312
2009 Cartwright RA. Problems and solutions for estimating indel rates and length distributions. Molecular Biology and Evolution. 26: 473-80. PMID 19042944 DOI: 10.1093/Molbev/Msn275  0.347
2005 Cartwright RA. DNA assembly with gaps (Dawg): simulating sequence evolution. Bioinformatics (Oxford, England). 21: iii31-8. PMID 16306390 DOI: 10.1093/Bioinformatics/Bti1200  0.357
2005 Comai L, Cartwright RA. A toxic mutator and selection alternative to the non-Mendelian RNA cache hypothesis for hothead reversion. The Plant Cell. 17: 2856-8. PMID 16267378 DOI: 10.1105/Tpc.105.036293  0.33
2004 Asmussen MA, Cartwright RA, Spencer HG. Frequency-dependent selection with dominance: a window onto the behavior of the mean fitness. Genetics. 167: 499-512. PMID 15166172 DOI: 10.1534/Genetics.167.1.499  0.606
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