Jijun Tang, Ph.D. - Related publications

University of South Carolina, Columbia, SC 
Computer Science, Molecular Biology, Biostatistics Biology
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33 most relevant papers in past 60 days:
Year Citation  Score
2021 Silberstein M, Nesbit N, Cai J, Lee PH. Pathway analysis for genome-wide genetic variation data: Analytic principles, latest developments, and new opportunities. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 33896739 DOI: 10.1016/j.jgg.2021.01.007   
2021 Suehiro Y, Yoshina S, Motohashi T, Iwata S, Dejima K, Mitani S. Efficient collection of a large number of mutations by mutagenesis of DNA damage response defective animals. Scientific Reports. 11: 7630. PMID 33828169 DOI: 10.1038/s41598-021-87226-7   
2021 Knyshov A, Gordon ERL, Weirauch C. New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics. Peerj. 9: e11019. PMID 33850647 DOI: 10.7717/peerj.11019   
2021 Reynolds KA, Rosa-Molinar E, Ward RE, Zhang H, Urbanowicz BR, Settles AM. Accelerating biological insight for understudied genes. Integrative and Comparative Biology. PMID 33970251 DOI: 10.1093/icb/icab029   
2021 Rahman CR, Amin R, Shatabda S, Toaha MSI. A convolution based computational approach towards DNA N6-methyladenine site identification and motif extraction in rice genome. Scientific Reports. 11: 10357. PMID 33990665 DOI: 10.1038/s41598-021-89850-9   
2021 Wainberg M, Kamber RA, Balsubramani A, Meyers RM, Sinnott-Armstrong N, Hornburg D, Jiang L, Chan J, Jian R, Gu M, Shcherbina A, Dubreuil MM, Spees K, Meuleman W, Snyder MP, et al. A genome-wide atlas of co-essential modules assigns function to uncharacterized genes. Nature Genetics. PMID 33859415 DOI: 10.1038/s41588-021-00840-z   
2021 Misztal I, Aguilar I, Lourenco D, Ma L, Steibel J, Toro M. Emerging issues in genomic selection. Journal of Animal Science. PMID 33773494 DOI: 10.1093/jas/skab092   
2021 O'Sullivan DM, Doyle RM, Temisak S, Redshaw N, Whale AS, Logan G, Huang J, Fischer N, Amos GCA, Preston MD, Marchesi JR, Wagner J, Parkhill J, Motro Y, Denise H, et al. An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities. Scientific Reports. 11: 10590. PMID 34012005 DOI: 10.1038/s41598-021-89881-2   
2021 Morrissey KL, DeWitt D, Shah N, Fall W, Shah H, McGown LB. Comparison of protein capture from a human cancer cell line by genomic G-quadruplex DNA sequences toward aptamer discovery. Analytical and Bioanalytical Chemistry. PMID 33884462 DOI: 10.1007/s00216-021-03328-1   
2021 Hong J, Gao R, Yang Y. CrepHAN: Cross-species prediction of enhancers by using hierarchical attention networks. Bioinformatics (Oxford, England). PMID 33978703 DOI: 10.1093/bioinformatics/btab349   
2021 Zhu X, Wang J, Sun B, Ren C, Yang T, Ding J. An efficient ensemble method for missing value imputation in microarray gene expression data. Bmc Bioinformatics. 22: 188. PMID 33849444 DOI: 10.1186/s12859-021-04109-4   
2021 Lichtenegger S, Trinh TT, Assig K, Prior K, Harmsen D, Pesl J, Zauner A, Lipp M, Que TA, Mutsam B, Kleinhappl B, Steinmetz I, Wagner GE. Development and validation of a core genome multilocus sequence typing scheme to facilitate molecular surveillance. Journal of Clinical Microbiology. PMID 33980649 DOI: 10.1128/JCM.00093-21   
2021 Morales-Briones DF, Gehrke B, Huang CH, Liston A, Ma H, Marx HE, Tank DC, Yang Y. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology. PMID 33978764 DOI: 10.1093/sysbio/syab032   
2021 Ping J, Feng P, Li J, Zhang R, Su Y, Wang T. Molecular evolution and SSRs analysis based on the chloroplast genome of . Ecology and Evolution. 11: 4786-4802. PMID 33976848 DOI: 10.1002/ece3.7381   
2021 Cadenelli N, Jun SW, Polo J, Wright A, Carrera D, Arvind. Enabling Genomics Pipelines in Commodity Personal Computers With Flash Storage. Frontiers in Genetics. 12: 615958. PMID 33995473 DOI: 10.3389/fgene.2021.615958   
2021 Ma W, Wang Z, Zhang Y, Magee NE, Feng Y, Shi R, Chen Y, Zang C. BARTweb: a web server for transcriptional regulator association analysis. Nar Genomics and Bioinformatics. 3: lqab022. PMID 33860225 DOI: 10.1093/nargab/lqab022   
2021 Bernard G, Stephens TG, González-Pech RA, Chan CX. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods. Methods in Molecular Biology (Clifton, N.J.). 2242: 69-76. PMID 33961218 DOI: 10.1007/978-1-0716-1099-2_5   
2021 Merlin B, Castro Alves JT, de Sá PHCG, de Oliveira MS, Dias LM, da Silva Moia G, Cardoso Dos Santos V, Veras AAO. CODON-Software to manual curation of prokaryotic genomes. Plos Computational Biology. 17: e1008797. PMID 33788829 DOI: 10.1371/journal.pcbi.1008797   
2021 Liaquat F, Munis MFH, Arif S, Haroon U, Shi J, Saqib S, Zaman W, Che S, Liu Q. PacBio Single-Molecule Long-Read Sequencing Reveals Genes Tolerating Manganese Stress in Saplings. Frontiers in Genetics. 12: 635043. PMID 33889177 DOI: 10.3389/fgene.2021.635043   
2021 Keller A, Ankenbrand MJ. Inferring Core Genome Phylogenies for Bacteria. Methods in Molecular Biology (Clifton, N.J.). 2242: 59-68. PMID 33961217 DOI: 10.1007/978-1-0716-1099-2_4   
2021 Miura H, Imafuku J, Kurosaki A, Sato M, Ma Y, Zhang G, Mizutani A, Kamimura K, Gurumurthy CB, Liu D, Ohtsuka M. Novel reporter mouse models useful for evaluating gene editing and for optimization of methods of delivering genome editing tools. Molecular Therapy. Nucleic Acids. 24: 325-336. PMID 33850636 DOI: 10.1016/j.omtn.2021.03.003   
2021 Sales G, Calura E. Micro-RNA Quantification, Target Gene Identification, and Pathway Analysis. Methods in Molecular Biology (Clifton, N.J.). 2284: 207-229. PMID 33835445 DOI: 10.1007/978-1-0716-1307-8_12   
2021 Puri A, Bajaj A, Lal S, Singh Y, Lal R. Phylogenomic Framework for Taxonomic Delineation of spp. and Exploration of Core-Pan Genome. Indian Journal of Microbiology. 61: 180-194. PMID 33927459 DOI: 10.1007/s12088-021-00929-3   
2021 Iwaki H, Leonard HL, Makarious MB, Bookman M, Landin B, Vismer D, Casey B, Gibbs JR, Hernandez DG, Blauwendraat C, Vitale D, Song Y, Kumar D, Dalgard CL, Sadeghi M, ... , ... , ... , et al. Accelerating Medicines Partnership: Parkinson's Disease. Genetic Resource. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 33960523 DOI: 10.1002/mds.28549   
2021 Jiang M, Li Y, Chen H, Wang B, Liu C. Comparative and phylogenetic analysis of the complete chloroplast genome sequences of and . Mitochondrial Dna. Part B, Resources. 6: 1498-1506. PMID 33969207 DOI: 10.1080/23802359.2021.1911700   
2021 Santiago C, Rito T, Vieira D, Fernandes T, Pais C, Sousa MJ, Soares P, Franco-Duarte R. Improvement of Genome Annotation: Towards the Exploitation of Genomic Features of a Biotechnologically Relevant Yeast. Journal of Fungi (Basel, Switzerland). 7. PMID 33920164 DOI: 10.3390/jof7040287   
2021 Fennell T, Zhang D, Isik M, Wang T, Gotta G, Wilson CJ, Marco E. CALITAS: A CRISPR-Cas-aware ALigner for off-TArget Search. The Crispr Journal. 4: 264-274. PMID 33876962 DOI: 10.1089/crispr.2020.0036   
2021 Rehder C, Bean LJH, Bick D, Chao E, Chung W, Das S, O'Daniel J, Rehm H, Shashi V, Vincent LM, . Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical Genetics and Genomics (ACMG). Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 33927380 DOI: 10.1038/s41436-021-01139-4   
2021 Yates B, Gray KA, Jones TEM, Bruford EA. Updates to HCOP: the HGNC comparison of orthology predictions tool. Briefings in Bioinformatics. PMID 33959747 DOI: 10.1093/bib/bbab155   
2021 Gu H, Zhang P, Xu M, Liang D. Amplicon genome fishing (AGF): a rapid and efficient method for sequencing target cis-regulatory regions in nonmodel organisms. Molecular Genetics and Genomics : Mgg. PMID 33797587 DOI: 10.1007/s00438-021-01775-0   
2021 Zhou J, Zhang S, Wang J, Shen H, Ai B, Gao W, Zhang C, Fei Q, Yuan D, Wu Z, Tembrock LR, Li S, Gu C, Liao X. Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution. Scientific Reports. 11: 9471. PMID 33947883 DOI: 10.1038/s41598-021-88160-4   
2021 Ashouri S, Wong JH, Nakagawa H, Shimada M, Tokunaga K, Fujimoto A. Characterization of intermediate-sized insertions using whole-genome sequencing data and analysis of their functional impact on gene expression. Human Genetics. PMID 33978893 DOI: 10.1007/s00439-021-02291-2   
2021 Jung S, Cheng CH, Buble K, Lee T, Humann J, Yu J, Crabb J, Hough H, Main D. Tripal MegaSearch: a tool for interactive and customizable query and download of big data. Database : the Journal of Biological Databases and Curation. 2021. PMID 33900378 DOI: 10.1093/database/baab023