Benilton d. Carvalho, Ph.D. - Publications

2009 Johns Hopkins University, Baltimore, MD 
Biostatistics Biology

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Wajnberg G, Carvalho BS, Ferreira CG, Passetti F. Combined Analysis of SNP Array Data Identifies Novel CNV Candidates and Pathways in Ependymoma and Mesothelioma. Biomed Research International. 2015: 902419. PMID 26185765 DOI: 10.1155/2015/902419  0.56
2015 Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, et al. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 12: 115-21. PMID 25633503 DOI: 10.1038/Nmeth.3252  0.56
2014 Opdahl A, Ambale Venkatesh B, Fernandes VR, Wu CO, Nasir K, Choi EY, Almeida AL, Rosen B, Carvalho B, Edvardsen T, Bluemke DA, Lima JA. Reply: Resting heart rate: an independent predictor of congestive heart failure. Journal of the American College of Cardiology. 64: 422. PMID 25060383 DOI: 10.1016/j.jacc.2014.05.017  0.56
2014 Weaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, et al. Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis. Nature Genetics. 46: 837-43. PMID 24952744 DOI: 10.1038/Ng.3013  0.56
2014 Opdahl A, Ambale Venkatesh B, Fernandes VR, Wu CO, Nasir K, Choi EY, Almeida AL, Rosen B, Carvalho B, Edvardsen T, Bluemke DA, Lima JA. Resting heart rate as predictor for left ventricular dysfunction and heart failure: MESA (Multi-Ethnic Study of Atherosclerosis). Journal of the American College of Cardiology. 63: 1182-9. PMID 24412444 DOI: 10.1016/j.jacc.2013.11.027  0.56
2013 Carvalho BS, Rustici G. The challenges of delivering bioinformatics training in the analysis of high-throughput data. Briefings in Bioinformatics. 14: 538-47. PMID 23543353 DOI: 10.1093/bib/bbt018  0.32
2011 Scharpf RB, Irizarry RA, Ritchie ME, Carvalho B, Ruczinski I. Using the R Package crlmm for Genotyping and Copy Number Estimation. Journal of Statistical Software. 40: 1-32. PMID 22523482  0.56
2011 Yegnasubramanian S, Wu Z, Haffner MC, Esopi D, Aryee MJ, Badrinath R, He TL, Morgan JD, Carvalho B, Zheng Q, De Marzo AM, Irizarry RA, Nelson WG. Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences. Bmc Genomics. 12: 313. PMID 21669002 DOI: 10.1186/1471-2164-12-313  0.56
2011 Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, et al. Performance assessment of copy number microarray platforms using a spike-in experiment. Bioinformatics (Oxford, England). 27: 1052-60. PMID 21478196 DOI: 10.1093/Bioinformatics/Btr106  0.56
2011 Ritchie ME, Liu R, Carvalho BS, Irizarry RA, Bahlo M, Booth DR, Broadley SA, Brown MA, Foote SJ, Griffiths LR, Kilpatrick TJ, Lechner-Scott J, Moscato P, Perreau VM, Rubio JP, et al. Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips Bmc Bioinformatics. 12. PMID 21385424 DOI: 10.1186/1471-2105-12-68  0.56
2011 Scharpf RB, Ruczinski I, Carvalho B, Doan B, Chakravarti A, Irizarry RA. A multilevel model to address batch effects in copy number estimation using SNP arrays. Biostatistics (Oxford, England). 12: 33-50. PMID 20625178 DOI: 10.1093/Biostatistics/Kxq043  0.56
2010 Carvalho BS, Irizarry RA. A framework for oligonucleotide microarray preprocessing. Bioinformatics (Oxford, England). 26: 2363-7. PMID 20688976 DOI: 10.1093/bioinformatics/btq431  0.56
2010 Carvalho BS, Louis TA, Irizarry RA. Quantifying uncertainty in genotype calls. Bioinformatics (Oxford, England). 26: 242-9. PMID 19906825 DOI: 10.1093/Bioinformatics/Btp624  0.56
2009 Ritchie ME, Carvalho BS, Hetrick KN, Tavaré S, Irizarry RA. R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinformatics (Oxford, England). 25: 2621-3. PMID 19661241 DOI: 10.1093/Bioinformatics/Btp470  0.56
2008 Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA. Estimating genome-wide copy number using allele-specific mixture models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 857-66. PMID 18707534 DOI: 10.1089/cmb.2007.0148  0.56
2008 Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA. Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biology. 9: R63. PMID 18387188 DOI: 10.1186/Gb-2008-9-4-R63  0.56
2008 Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP. Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Research. 18: 780-90. PMID 18316654 DOI: 10.1101/gr.7301508  0.56
2007 Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. Biostatistics (Oxford, England). 8: 485-99. PMID 17189563 DOI: 10.1093/biostatistics/kxl042  0.56
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