Benilton d. Carvalho, Ph.D. - Publications

Affiliations: 
2009 Johns Hopkins University, Baltimore, MD 
Area:
Biostatistics Biology

14/28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Lima CSP, Carvalho B, Pellegrino R, Khater L, Chone CT, Lourenco GJ. Association of polymorphisms in genes related to cell cycle (ERP29, LEF1, MCC and PTCH1) and DNA transcription factors (IKBKAP and ZNF415) with base of tongue squamous cell carcinoma risk. Journal of Clinical Oncology. 31: 6073-6073. DOI: 10.1200/Jco.2013.31.15_Suppl.6073  0.355
2012 Lima CSP, Carvalho B, Pellegrino R, Khater L, Chone CT, Costa FF, Lourenco GJ. Base of tongue squamous cell carcinoma susceptibility: Novel candidate genetic polymorphisms identified in genome-wide association study. Journal of Clinical Oncology. 30. DOI: 10.1200/Jco.2012.30.15_Suppl.E16041  0.439
2011 Scharpf RB, Irizarry RA, Ritchie ME, Carvalho B, Ruczinski I. Using the R Package crlmm for Genotyping and Copy Number Estimation. Journal of Statistical Software. 40: 1-32. PMID 22523482  0.624
2011 Yegnasubramanian S, Wu Z, Haffner MC, Esopi D, Aryee MJ, Badrinath R, He TL, Morgan JD, Carvalho B, Zheng Q, De Marzo AM, Irizarry RA, Nelson WG. Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences. Bmc Genomics. 12: 313. PMID 21669002 DOI: 10.1186/1471-2164-12-313  0.526
2011 Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, et al. Performance assessment of copy number microarray platforms using a spike-in experiment. Bioinformatics (Oxford, England). 27: 1052-60. PMID 21478196 DOI: 10.1093/Bioinformatics/Btr106  0.658
2011 Scharpf RB, Ruczinski I, Carvalho B, Doan B, Chakravarti A, Irizarry RA. A multilevel model to address batch effects in copy number estimation using SNP arrays. Biostatistics (Oxford, England). 12: 33-50. PMID 20625178 DOI: 10.1093/Biostatistics/Kxq043  0.692
2011 Scharpf RB, Irizarry RA, Ritchie ME, Carvalho B, Ruczinski I. Using the R Package crlmm for Genotyping and Copy Number Estimation. Journal of Statistical Software. 40: 1-32. DOI: 10.18637/Jss.V040.I12  0.645
2009 Carvalho B, Irizarry RA, Scharpf RB, Carey VJ. Processing and analyzing Affymetrix SNP chips with Bioconductor Statistics in Biosciences. 1: 160-180. DOI: 10.1007/S12561-009-9015-0  0.626
2008 Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA. Estimating genome-wide copy number using allele-specific mixture models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 857-66. PMID 18707534 DOI: 10.1089/Cmb.2007.0148  0.675
2008 Tuefferd M, De Bondt A, Van Den Wyngaert I, Talloen W, Verbeke T, Carvalho B, Clevert DA, Alifano M, Raghavan N, Amaratunga D, Göhlmann H, Broët P, Camilleri-Broët S. Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays. Genes, Chromosomes & Cancer. 47: 957-64. PMID 18663747 DOI: 10.1002/Gcc.20599  0.492
2008 Lin S, Carvalho B, Cutler DJ, Arking DE, Chakravarti A, Irizarry RA. Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays. Genome Biology. 9: R63. PMID 18387188 DOI: 10.1186/Gb-2008-9-4-R63  0.6
2008 Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP. Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Research. 18: 780-90. PMID 18316654 DOI: 10.1101/Gr.7301508  0.584
2008 Bengtsson H, Irizarry R, Carvalho B, Speed TP. Estimation and assessment of raw copy numbers at the single locus level Bioinformatics. 24: 759-767. PMID 18204055 DOI: 10.1093/Bioinformatics/Btn016  0.663
2007 Carvalho B, Bengtsson H, Speed TP, Irizarry RA. Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. Biostatistics (Oxford, England). 8: 485-99. PMID 17189563 DOI: 10.1093/Biostatistics/Kxl042  0.648
Low-probability matches (unlikely to be authored by this person)
2014 Weaver JM, Ross-Innes CS, Shannon N, Lynch AG, Forshew T, Barbera M, Murtaza M, Ong CA, Lao-Sirieix P, Dunning MJ, Smith L, Smith ML, Anderson CL, Carvalho B, O'Donovan M, et al. Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis. Nature Genetics. 46: 837-43. PMID 24952744 DOI: 10.1038/Ng.3013  0.29
2014 Weaver JM, Ross-Innes C, Shannon NB, Lynch A, Forshew T, Barbera M, Ong CJ, Murtaza M, Lao-Sirieix P, Dunning MJ, Smith L, Smith M, Carvalho B, Underwood T, May A, et al. 935 The Timing of Oncogenic Events in the Evolution of the Oesophageal Adenocarcinoma Genome and Implications for Clinical Diagnostics Gastroenterology. 146: S-161. DOI: 10.1016/S0016-5085(14)60576-X  0.289
2006 Fernandes VR, Polak JF, Edvardsen T, Carvalho B, Gomes A, Bluemke DA, Nasir K, O'Leary DH, Lima JA. Subclinical atherosclerosis and incipient regional myocardial dysfunction in asymptomatic individuals: the Multi-Ethnic Study of Atherosclerosis (MESA). Journal of the American College of Cardiology. 47: 2420-8. PMID 16781369 DOI: 10.1016/J.Jacc.2005.12.075  0.244
2008 Fernandes VR, Polak JF, Cheng S, Rosen BD, Carvalho B, Nasir K, McClelland R, Hundley G, Pearson G, O'Leary DH, Bluemke DA, Lima JA. Arterial stiffness is associated with regional ventricular systolic and diastolic dysfunction: the Multi-Ethnic Study of Atherosclerosis. Arteriosclerosis, Thrombosis, and Vascular Biology. 28: 194-201. PMID 17962621 DOI: 10.1161/Atvbaha.107.156950  0.236
2007 Fernandes VR, Edvardsen T, Rosen BD, Carvalho B, Campos O, Cordeiro MA, Kronmal R, Bluemke DA, Lima JA. The influence of left ventricular size and global function on regional myocardial contraction and relaxation in an adult population free of cardiovascular disease: a tagged CMR study of the MESA cohort. Journal of Cardiovascular Magnetic Resonance : Official Journal of the Society For Cardiovascular Magnetic Resonance. 9: 921-30. PMID 18066753 DOI: 10.1080/10976640701693824  0.225
2014 Opdahl A, Ambale Venkatesh B, Fernandes VR, Wu CO, Nasir K, Choi EY, Almeida AL, Rosen B, Carvalho B, Edvardsen T, Bluemke DA, Lima JA. Resting heart rate as predictor for left ventricular dysfunction and heart failure: MESA (Multi-Ethnic Study of Atherosclerosis). Journal of the American College of Cardiology. 63: 1182-9. PMID 24412444 DOI: 10.1016/J.Jacc.2013.11.027  0.183
2016 de Andrade HM, de Albuquerque M, Avansini SH, de S Rocha C, Dogini DB, Nucci A, Carvalho B, Lopes-Cendes I, França MC. MicroRNAs-424 and 206 are potential prognostic markers in spinal onset amyotrophic lateral sclerosis. Journal of the Neurological Sciences. 368: 19-24. PMID 27538595 DOI: 10.1016/J.Jns.2016.06.046  0.182
2011 Sande Lie JH, Carvalho BD. Chronicle of a frustration foretold? Theimplementation of a broad protection agendain the united nations Journal of International Peacekeeping. 15: 341-362. DOI: 10.1163/187541111X572719  0.1
2011 Carvalho BD, Schia NN. Sexual and gender-based violence in Liberia and the case for a comprehensive approach to the rule of law Journal of International Relations and Development. 14: 134-141. DOI: 10.1057/jird.2010.26  0.054
2019 Maruyama SR, Carvalho B, González-Porta M, Rung J, Brazma A, Gustavo Gardinassi L, Ferreira BR, Banin TM, Veríssimo CJ, Katiki LM, de Miranda-Santos IKF. Blood transcriptome profile induced by an efficacious vaccine formulated with salivary antigens from cattle ticks. Npj Vaccines. 4: 53. PMID 31871773 DOI: 10.1038/s41541-019-0145-1  0.052
2019 Maruyama SR, Carvalho B, González-Porta M, Rung J, Brazma A, Gustavo Gardinassi L, Ferreira BR, Banin TM, Veríssimo CJ, Katiki LM, de Miranda-Santos IKF. Blood transcriptome profile induced by an efficacious vaccine formulated with salivary antigens from cattle ticks. Npj Vaccines. 4: 53. PMID 33328479 DOI: 10.1038/s41541-019-0145-1  0.052
2012 Cachiba TH, Carvalho BD, Carvalho DT, Cusinato M, Prado CG, Dias ALT. Synthesis and preliminary evaluation of n-acylhydrazone compounds as antibacterial and antifungal agents Quimica Nova. 35: 1566-1569.  0.038
2012 Carvalho J, van Grieken N, Pereira P, Diosdado B, Santos M, Meijer G, Buffart T, Seruca R, Carvalho B, Oliveira C. 591 Lack of MicroRNA-101 Causes E-cadherin Functional Deregulation Through EZH2 Upregulation in Intestinal Gastric Cancer European Journal of Cancer. 48: S141. DOI: 10.1016/S0959-8049(12)71248-0  0.035
2014 Opdahl A, Ambale Venkatesh B, Fernandes VR, Wu CO, Nasir K, Choi EY, Almeida AL, Rosen B, Carvalho B, Edvardsen T, Bluemke DA, Lima JA. Reply: Resting heart rate: an independent predictor of congestive heart failure. Journal of the American College of Cardiology. 64: 422. PMID 25060383 DOI: 10.1016/j.jacc.2014.05.017  0.02
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