Amrita Pati, Ph.D. - Publications

Affiliations: 
2008 Virginia Polytechnic and State University, United States 
Area:
Computer Science, Bioinformatics Biology

115 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Osman WAM, van Berkum P, León-Barrios M, Velázquez E, Elia P, Tian R, Ardley J, Gollagher M, Seshadri R, Reddy TBK, Ivanova N, Woyke T, Pati A, Markowitz V, Baeshen MN, et al. High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain. Standards in Genomic Sciences. 12: 58. PMID 28975015 DOI: 10.1186/s40793-017-0270-2  0.32
2017 Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, ... ... Pati A, et al. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. PMID 28604660 DOI: 10.1038/nbt.3886  0.32
2016 Nicholson WL, Davis CL, Shapiro N, Huntemann M, Clum A, Reddy TB, Pillay M, Markowitz V, Varghese N, Pati A, Ivanova N, Kyrpides N, Woyke T. An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T). Standards in Genomic Sciences. 11: 65. PMID 27617056 DOI: 10.1186/s40793-016-0193-3  0.96
2016 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum. Genome Announcements. 4. PMID 27609918 DOI: 10.1128/genomeA.00937-16  0.32
2016 Peña A, Busquets A, Gomila M, Mulet M, Gomila RM, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, García-Valdés E, Göker M, Woyke T, Klenk HP, Kyrpides N, et al. High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains. Standards in Genomic Sciences. 11: 55. PMID 27594974 DOI: 10.1186/s40793-016-0178-2  0.32
2016 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announcements. 4. PMID 27491994 DOI: 10.1128/genomeA.00765-16  0.32
2016 Gehlot HS, Ardley J, Tak N, Tian R, Poonar N, Meghwal RR, Rathi S, Tiwari R, Adnawani W, Seshadri R, Reddy TB, Pati A, Woyke T, Pillay M, Markowitz V, et al. High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India. Standards in Genomic Sciences. 11: 43. PMID 27340511 DOI: 10.1186/s40793-016-0157-7  0.96
2016 Tashkandy N, Sabban S, Fakieh M, Meier-Kolthoff JP, Huang S, Tindall BJ, Rohde M, Baeshen MN, Baeshen NA, Lapidus A, Copeland A, Pillay M, Reddy TB, Huntemann M, Pati A, et al. High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). Standards in Genomic Sciences. 11: 42. PMID 27313837 DOI: 10.1186/s40793-016-0159-5  0.32
2016 Panschin I, Huang S, Meier-Kolthoff JP, Tindall BJ, Rohde M, Verbarg S, Lapidus A, Han J, Trong S, Haynes M, Reddy TB, Huntemann M, Pati A, Ivanova NN, Mavromatis K, et al. Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005. Standards in Genomic Sciences. 11: 37. PMID 27274783 DOI: 10.1186/s40793-016-0163-9  0.32
2016 Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Palaniappan K, Szeto E, Pillay M, Chen IM, Pati A, Nielsen T, Markowitz VM, Kyrpides NC. Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4). Standards in Genomic Sciences. 11: 27. PMID 27004084 DOI: 10.1186/s40793-016-0148-8  0.32
2016 Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Tennessen K, Palaniappan K, Szeto E, Pillay M, Chen IM, Pati A, Nielsen T, Markowitz VM, Kyrpides NC. The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4). Standards in Genomic Sciences. 11: 17. PMID 26918089 DOI: 10.1186/s40793-016-0138-x  0.32
2016 Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, et al. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications. 7: 10476. PMID 26814032 DOI: 10.1038/ncomms10476  0.96
2015 Ardley J, Tian R, O'Hara G, Seshadri R, Reddy TB, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Howieson J, Reeve W. High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil. Standards in Genomic Sciences. 10: 126. PMID 26664655 DOI: 10.1186/s40793-015-0119-5  0.96
2015 Tiwari R, Howieson J, Yates R, Tian R, Held B, Tapia R, Han C, Seshadri R, Reddy TB, Huntemann M, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, et al. Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos. Standards in Genomic Sciences. 10: 113. PMID 26629308 DOI: 10.1186/s40793-015-0115-9  0.96
2015 Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G. Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake. Standards in Genomic Sciences. 10: 105. PMID 26594306 DOI: 10.1186/s40793-015-0097-7  0.32
2015 Choi DH, Ahn C, Jang GI, Lapidus A, Han J, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, Rohde M, Tindall B, Göker M, Woyke T, Klenk HP, et al. High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture. Standards in Genomic Sciences. 10: 98. PMID 26566423 DOI: 10.1186/s40793-015-0088-8  0.96
2015 Eshraghi L, De Meyer SE, Tian R, Seshadri R, Ivanova N, Pati A, Markowitz V, Woyke T, Kyrpides NC, Tiwari R, Yates R, Howieson J, Reeve W. High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia. Standards in Genomic Sciences. 10: 87. PMID 26512312 DOI: 10.1186/s40793-015-0073-2  0.32
2015 Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Palaniappan K, Szeto E, Pillay M, Chen IM, Pati A, Nielsen T, Markowitz VM, Kyrpides NC. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4). Standards in Genomic Sciences. 10: 86. PMID 26512311 DOI: 10.1186/s40793-015-0077-y  0.32
2015 Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G. Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T). Standards in Genomic Sciences. 10: 85. PMID 26512310 DOI: 10.1186/s40793-015-0078-x  0.32
2015 Berben T, Sorokin DY, Ivanova N, Pati A, Kyrpides N, Goodwin LA, Woyke T, Muyzer G. Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1(T), a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification. Standards in Genomic Sciences. 10: 84. PMID 26512309 DOI: 10.1186/s40793-015-0080-3  0.32
2015 Oulas A, Polymenakou PN, Seshadri R, Tripp HJ, Mandalakis M, Paez-Espino AD, Pati A, Chain P, Nomikou P, Carey S, Kilias S, Christakis C, Kotoulas G, Magoulas A, Ivanova NN, et al. Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology. Environmental Microbiology. PMID 26487573 DOI: 10.1111/1462-2920.13095  0.32
2015 De Meyer SE, Parker M, Van Berkum P, Tian R, Seshadri R, Reddy TB, Markowitz V, Ivanova N, Pati A, Woyke T, Kyrpides N, Howieson J, Reeve W. High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6. Standards in Genomic Sciences. 10: 80. PMID 26478786 DOI: 10.1186/s40793-015-0074-1  0.96
2015 De Meyer SE, Tian R, Seshadri R, Reddy T, Markowitz V, Ivanova N, Pati A, Woyke T, Kyrpides N, Yates R, Howieson J, Reeve W. High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176. Standards in Genomic Sciences. 10: 79. PMID 26478785 DOI: 10.1186/s40793-015-0072-3  0.96
2015 Markowitz VM, Chen IM, Chu K, Pati A, Ivanova NN, Kyrpides NC. Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System. Trends in Microbiology. 23: 730-41. PMID 26439299 DOI: 10.1016/j.tim.2015.07.012  0.32
2015 De Meyer SE, Tian R, Seshadri R, Ivanova N, Pati A, Markowitz V, Woyke T, Yates R, Howieson J, Kyrpides N, Reeve W. High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T). Standards in Genomic Sciences. 10: 64. PMID 26388968 DOI: 10.1186/s40793-015-0048-3  0.96
2015 Reeve W, Sullivan J, Ronson C, Tian R, Munk C, Han C, Reddy TB, Seshadri R, Woyke T, Pati A, Markowitz V, Ivanova N, Kyrpides N. High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym. Standards in Genomic Sciences. 10: 54. PMID 26380641 DOI: 10.1186/s40793-015-0049-2  0.32
2015 Ntougias S, Lapidus A, Copeland A, Reddy TB, Pati A, Ivanova NN, Markowitz VM, Klenk HP, Woyke T, Fasseas C, Kyrpides NC, Zervakis GI. High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea. Standards in Genomic Sciences. 10: 52. PMID 26380640 DOI: 10.1186/s40793-015-0052-7  0.32
2015 Yassin AF, Lapidus A, Han J, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, Woyke T, Klenk HP, Kyrpides NC. High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395(T) (DSM 45146(T)). Standards in Genomic Sciences. 10: 50. PMID 26380638 DOI: 10.1186/s40793-015-0036-7  0.32
2015 Sakamoto M, Lapidus AL, Han J, Trong S, Haynes M, Reddy TB, Mikhailova N, Huntemann M, Pati A, Ivanova NN, Pukall R, Markowitz VM, Woyke T, Klenk HP, Kyrpides NC, et al. High quality draft genome sequence of Bacteroides barnesiae type strain BL2(T) (DSM 18169(T)) from chicken caecum. Standards in Genomic Sciences. 10: 48. PMID 26380636 DOI: 10.1186/s40793-015-0045-6  0.96
2015 Hahnke RL, Stackebrandt E, Meier-Kolthoff JP, Tindall BJ, Huang S, Rohde M, Lapidus A, Han J, Trong S, Haynes M, Reddy TB, Huntemann M, Pati A, Ivanova NN, Mavromatis K, et al. High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes. Standards in Genomic Sciences. 10: 46. PMID 26380634 DOI: 10.1186/s40793-015-0032-y  0.96
2015 Tripp HJ, Sutton G, White O, Wortman J, Pati A, Mikhailova N, Ovchinnikova G, Payne SH, Kyrpides NC, Ivanova N. Toward a standard in structural genome annotation for prokaryotes. Standards in Genomic Sciences. 10: 45. PMID 26380633 DOI: 10.1186/s40793-015-0034-9  0.96
2015 Yates R, Howieson J, De Meyer SE, Tian R, Seshadri R, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Loi A, Nutt B, Garau G, Sulas L, Reeve W. High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy. Standards in Genomic Sciences. 10: 44. PMID 26380632 DOI: 10.1186/s40793-015-0020-2  0.32
2015 Mhamdi R, Ardley J, Tian R, Seshadri R, Reddy TB, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Reeve W. High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris. Standards in Genomic Sciences. 10: 34. PMID 26380038 DOI: 10.1186/s40793-015-0005-1  0.96
2015 Tian R, Parker M, Seshadri R, Reddy T, Markowitz V, Ivanova N, Pati A, Woyke T, Baeshen M, Baeshen N, Kyrpides N, Reeve W. High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica. Standards in Genomic Sciences. 10: 33. PMID 26380037 DOI: 10.1186/s40793-015-0007-z  0.96
2015 Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, ... ... Pati A, et al. Minimum Information about a Biosynthetic Gene cluster. Nature Chemical Biology. 11: 625-31. PMID 26284661 DOI: 10.1038/nchembio.1890  0.96
2015 Tisa LS, Beauchemin N, Cantor MN, Furnholm T, Ghodhbane-Gtari F, Goodwin L, Copeland A, Gtari M, Huntemann M, Ivanova N, Kyrpides N, Markowitz V, Mavrommatis K, Mikhailova N, Nouioui I, ... ... Pati A, et al. Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina. Genome Announcements. 3. PMID 26251504 DOI: 10.1128/genomeA.00889-15  0.32
2015 Mazur A, De Meyer SE, Tian R, Wielbo J, Zebracki K, Seshadri R, Reddy T, Markowitz V, Ivanova NN, Pati A, Woyke T, Kyrpides NC, Reeve W. High-quality permanent draft genome sequence of Rhizobium leguminosarum bv. viciae strain GB30; an effective microsymbiont of Pisum sativum growing in Poland. Standards in Genomic Sciences. 10: 36. PMID 26221417 DOI: 10.1186/s40793-015-0029-6  0.96
2015 Rooney EA, Rowe KT, Guseva A, Huntemann M, Han JK, Chen A, Kyrpides NC, Mavromatis K, Markowitz VM, Palaniappan K, Ivanova N, Pati A, Liolios K, Nordberg HP, Cantor MN, et al. Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a. Genome Announcements. 3. PMID 26205857 DOI: 10.1128/genomeA.00797-15  0.32
2015 De Meyer SE, Fabiano E, Tian R, Van Berkum P, Seshadri R, Reddy T, Markowitz V, Ivanova N, Pati A, Woyke T, Howieson J, Kyrpides N, Reeve W. High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413. Standards in Genomic Sciences. 10: 31. PMID 26203342 DOI: 10.1186/s40793-015-0018-9  0.96
2015 Laviad S, Lapidus A, Han J, Haynes M, Reddy T, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Lang E, Rohde M, Markowitz V, Woyke T, Klenk HP, Kyrpides NC, et al. High quality draft genome sequence of Brachymonas chironomi AIMA4(T) (DSM 19884(T)) isolated from a Chironomus sp. egg mass. Standards in Genomic Sciences. 10: 29. PMID 26203340 DOI: 10.1186/s40793-015-0010-4  0.32
2015 Tian R, Parker M, Seshadri R, Reddy T, Markowitz V, Ivanova N, Pati A, Woyke T, Baeshen MN, Baeshen NA, Kyrpides N, Reeve W. High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama. Standards in Genomic Sciences. 10: 27. PMID 26203338 DOI: 10.1186/s40793-015-0006-0  0.96
2015 Tian R, Parker M, Seshadri R, Reddy T, Markowitz V, Ivanova N, Pati A, Woyke T, Baeshen MN, Baeshen NA, Kyrpides N, Reeve W. High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York. Standards in Genomic Sciences. 10: 24. PMID 26203336 DOI: 10.1186/s40793-015-0008-y  0.96
2015 Laviad S, Lapidus A, Copeland A, Reddy T, Huntemann M, Pati A, Ivanova NN, Markowitz VM, Pukall R, Klenk HP, Woyke T, Kyrpides NC, Halpern M. High quality draft genome sequence of Leucobacter chironomi strain MM2LB(T) (DSM 19883(T)) isolated from a Chironomus sp. egg mass. Standards in Genomic Sciences. 10: 21. PMID 26203333 DOI: 10.1186/s40793-015-0003-3  0.32
2015 Mukherjee S, Huntemann M, Ivanova N, Kyrpides NC, Pati A. Large-scale contamination of microbial isolate genomes by Illumina PhiX control. Standards in Genomic Sciences. 10: 18. PMID 26203331 DOI: 10.1186/1944-3277-10-18  0.32
2015 De Meyer SE, Fabiano E, Tian R, Van Berkum P, Seshadri R, Reddy T, Markowitz V, Ivanova NN, Pati A, Woyke T, Howieson J, Kyrpides NC, Reeve W. High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512. Standards in Genomic Sciences. 10: 13. PMID 26203327 DOI: 10.1186/1944-3277-10-13  0.96
2015 Mukherjee S, Lapidus A, Shapiro N, Cheng JF, Han J, Reddy T, Huntemann M, Ivanova N, Mikhailova N, Chen A, Palaniappan K, Spring S, Göker M, Markowitz V, Woyke T, ... ... Pati A, et al. High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1(T) (DSM 17521(T)) isolated from muddy waters of a drainage system in Chandigarh, India. Standards in Genomic Sciences. 10: 8. PMID 26203325 DOI: 10.1186/1944-3277-10-8  0.32
2015 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium. Genome Announcements. 3. PMID 26184945 DOI: 10.1128/genomeA.00793-15  0.32
2015 Hadjithomas M, Chen IM, Chu K, Ratner A, Palaniappan K, Szeto E, Huang J, Reddy TB, Cimerman?i? P, Fischbach MA, Ivanova NN, Markowitz VM, Kyrpides NC, Pati A. IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites. Mbio. 6. PMID 26173699 DOI: 10.1128/mBio.00932-15  0.96
2015 Varghese NJ, Mukherjee S, Ivanova N, Konstantinidis KT, Mavrommatis K, Kyrpides NC, Pati A. Microbial species delineation using whole genome sequences. Nucleic Acids Research. 43: 6761-71. PMID 26150420 DOI: 10.1093/nar/gkv657  0.32
2015 Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, et al. Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announcements. 3. PMID 26089431 DOI: 10.1128/genomeA.00672-15  0.32
2015 Tennessen K, Andersen E, Clingenpeel S, Rinke C, Lundberg DS, Han J, Dangl JL, Ivanova N, Woyke T, Kyrpides N, Pati A. ProDeGe: a computational protocol for fully automated decontamination of genomes. The Isme Journal. PMID 26057843 DOI: 10.1038/ismej.2015.100  0.32
2015 He S, Malfatti SA, McFarland JW, Anderson FE, Pati A, Huntemann M, Tremblay J, Glavina del Rio T, Waldrop MP, Windham-Myers L, Tringe SG. Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions. Mbio. 6: e00066-15. PMID 25991679 DOI: 10.1128/mBio.00066-15  0.96
2015 Lee LL, Izquierdo JA, Blumer-Schuette SE, Zurawski JV, Conway JM, Cottingham RW, Huntemann M, Copeland A, Chen IM, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, ... ... Pati A, et al. Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus". Genome Announcements. 3. PMID 25977428 DOI: 10.1128/genomeA.00440-15  0.32
2015 Gutierrez T, Thompson HF, Angelova A, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, et al. Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton. Genome Announcements. 3. PMID 25814607 DOI: 10.1128/genomeA.00207-15  0.32
2015 Kotak M, Isanapong J, Goodwin L, Bruce D, Chen A, Han CS, Huntemann M, Ivanova N, Land ML, Nolan M, Pati A, Woyke T, Rodrigues JL. Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes. Genome Announcements. 3. PMID 25744998 DOI: 10.1128/genomeA.00060-15  0.32
2015 Gao XY, Zhi XY, Li HW, Zhou Y, Lapidus A, Han J, Haynes M, Lobos E, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Tindall BJ, Markowitz V, Woyke T, et al. Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China. Standards in Genomic Sciences. 10: 1. PMID 25678942 DOI: 10.1186/1944-3277-10-1  0.32
2014 Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, et al. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Standards in Genomic Sciences. 9: 10. PMID 25780503 DOI: 10.1186/1944-3277-9-10  0.32
2014 Kelly S, Sullivan J, Ronson C, Tian R, Bräu L, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woyke T, ... ... Pati A, et al. Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037. Standards in Genomic Sciences. 9: 7. PMID 25780500 DOI: 10.1186/1944-3277-9-7  0.32
2014 Kelly S, Sullivan J, Ronson C, Tian R, Bräu L, Munk C, Goodwin L, Han C, Woyke T, Reddy T, Huntemann M, Pati A, Mavromatis K, Markowitz V, Ivanova N, et al. Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A. Standards in Genomic Sciences. 9: 6. PMID 25780499 DOI: 10.1186/1944-3277-9-6  0.32
2014 Ardley J, Tian R, Howieson J, Yates R, Bräu L, Han J, Lobos E, Huntemann M, Chen A, Mavromatis K, Markowitz V, Ivanova N, Pati A, Goodwin L, Woyke T, et al. Genome sequence of the dark pink pigmented Listia bainesii microsymbiont Methylobacterium sp. WSM2598. Standards in Genomic Sciences. 9: 5. PMID 25780498 DOI: 10.1186/1944-3277-9-5  0.32
2014 Garau G, Terpolilli J, Hill Y, Tian R, Howieson J, Bräu L, Goodwin L, Han J, Reddy T, Huntemann M, Pati A, Woyke T, Mavromatis K, Markowitz V, Ivanova N, et al. Genome sequence of Ensifer medicae Di28; an effective N2-fixing microsymbiont of Medicago murex and M. polymorpha. Standards in Genomic Sciences. 9: 4. PMID 25780497 DOI: 10.1186/1944-3277-9-4  0.96
2014 Reeve W, Sullivan J, Ronson C, Tian R, Bräu L, Davenport K, Goodwin L, Chain P, Woyke T, Lobos E, Huntemann M, Pati A, Mavromatis K, Markowitz V, Ivanova N, et al. Genome sequence of the Lotus corniculatus microsymbiont Mesorhizobium loti strain R88B. Standards in Genomic Sciences. 9: 3. PMID 25780496 DOI: 10.1186/1944-3277-9-3  0.32
2014 Simmons CW, Reddy AP, D'haeseleer P, Khudyakov J, Billis K, Pati A, Simmons BA, Singer SW, Thelen MP, VanderGheynst JS. Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw. Biotechnology For Biofuels. 7: 495. PMID 25648696 DOI: 10.1186/s13068-014-0180-0  0.96
2014 Vishnivetskaya TA, Chauhan A, Layton AC, Pfiffner SM, Huntemann M, Copeland A, Chen A, Kyrpides NC, Markowitz VM, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen EW, Pati A, et al. Draft genome sequences of 10 strains of the genus exiguobacterium. Genome Announcements. 2. PMID 25323723 DOI: 10.1128/genomeA.01058-14  0.32
2014 Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, et al. Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California. Standards in Genomic Sciences. 9: 1259-74. PMID 25197496 DOI: 10.4056/sigs.5029016  0.96
2014 Reeve W, Parker M, Tian R, Goodwin L, Teshima H, Tapia R, Han C, Han J, Liolios K, Huntemann M, Pati A, Woyke T, Mavromatis K, Markowitz V, Ivanova N, et al. Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas. Standards in Genomic Sciences. 9: 1159-67. PMID 25197490 DOI: 10.4056/sigs.5249382  0.96
2014 Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, ... ... Pati A, et al. Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring. Standards in Genomic Sciences. 9: 1105-17. PMID 25197486 DOI: 10.4056/sigs.3016383  0.96
2014 Biddle AS, Leschine S, Huntemann M, Han J, Chen A, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Schaumberg A, Pati A, Stamatis D, Reddy T, et al. The complete genome sequence of Clostridium indolis DSM 755(T.). Standards in Genomic Sciences. 9: 1089-104. PMID 25197485 DOI: 10.4056/sigs.5281010  0.96
2014 Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Pati A, et al. Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9: 1076-88. PMID 25197484 DOI: 10.4056/sigs.5138968  0.96
2014 Zhou Y, Li R, Gao XY, Lapidus A, Han J, Haynes M, Lobos E, Huntemann M, Pati A, Ivanova NN, Rohde M, Mavromatis K, Tindall BJ, Markowitz V, Woyke T, et al. High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169(T) (DSM 21076(T)) from a sea urchin in southern China. Standards in Genomic Sciences. 9: 1020-30. PMID 25197480 DOI: 10.4056/sigs.5449586  0.96
2014 Ntougias S, Lapidus A, Han J, Mavromatis K, Pati A, Chen A, Klenk HP, Woyke T, Fasseas C, Kyrpides NC, Zervakis GI. High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6(T)), a diphenol degrader with genes involved in the catechol pathway. Standards in Genomic Sciences. 9: 783-93. PMID 25197463 DOI: 10.4056/sigs.5088950  0.32
2014 Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Tindall BJ, Kyrpides NC, et al. Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment. Standards in Genomic Sciences. 9: 687-703. PMID 25197454 DOI: 10.4056/sigs.3828824  0.96
2014 Reeve W, Ballard R, Drew E, Tian R, Bräu L, Goodwin L, Huntemann M, Han J, Tatiparthi R, Chen A, Mavrommatis K, Markowitz V, Palaniappan K, Ivanova N, Pati A, et al. Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128. Standards in Genomic Sciences. 9: 602-13. PMID 25197447 DOI: 10.4056/sigs.4929626  0.96
2014 Walker R, Watkin E, Tian R, Bräu L, O'Hara G, Goodwin L, Han J, Reddy T, Huntemann M, Pati A, Woyke T, Mavromatis K, Markowitz V, Ivanova N, Kyrpides N, et al. Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia. Standards in Genomic Sciences. 9: 1168-80. PMID 25197442 DOI: 10.4056/sigs.5018795  0.96
2014 Walker R, Watkin E, Tian R, Bräu L, O'Hara G, Goodwin L, Han J, Lobos E, Huntemann M, Pati A, Woyke T, Mavromatis K, Markowitz V, Ivanova N, Kyrpides N, et al. Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia. Standards in Genomic Sciences. 9: 551-61. PMID 25197440 DOI: 10.4056/sigs.5008793  0.96
2014 Reeve W, Ardley J, Tian R, De Meyer S, Terpolilli J, Melino V, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Zhang X, Bruce D, Detter C, Tapia R, ... ... Pati A, et al. Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557(T.). Standards in Genomic Sciences. 9: 540-50. PMID 25197439 DOI: 10.4056/sigs.4548266  0.96
2014 Terpolilli J, Rui T, Yates R, Howieson J, Poole P, Munk C, Tapia R, Han C, Markowitz V, Tatiparthi R, Mavrommatis K, Ivanova N, Pati A, Goodwin L, Woyke T, et al. Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum. Standards in Genomic Sciences. 9: 527-39. PMID 25197438 DOI: 10.4056/sigs.4988693  0.96
2014 Reeve W, Ballard R, Howieson J, Drew E, Tian R, Bräu L, Munk C, Davenport K, Chain P, Goodwin L, Pagani I, Huntemann M, Mavrommatis K, Pati A, Markowitz V, et al. Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece. Standards in Genomic Sciences. 9: 514-26. PMID 25197437 DOI: 10.4056/sigs.4938652  0.96
2014 Willems A, Tian R, Bräu L, Goodwin L, Han J, Liolios K, Huntemann M, Pati A, Woyke T, Mavrommatis K, Markowitz V, Ivanova N, Kyrpides N, Reeve W. Genome sequence of Burkholderia mimosarum strain LMG 23256(T), a Mimosa pigra microsymbiont from Anso, Taiwan. Standards in Genomic Sciences. 9: 484-94. PMID 25197434 DOI: 10.4056/sigs.4848627  0.96
2014 Reeve W, Tian R, Bräu L, Goodwin L, Munk C, Detter C, Tapia R, Han C, Liolios K, Huntemann M, Pati A, Woyke T, Mavrommatis K, Markowitz V, Ivanova N, et al. Genome sequence of Ensifer arboris strain LMG 14919(T); a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan. Standards in Genomic Sciences. 9: 473-83. PMID 25197433 DOI: 10.4056/sigs.4828625  0.96
2014 Nandasena K, Yates R, Tiwari R, O'Hara G, Howieson J, Ninawi M, Chertkov O, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Liolios K, ... Pati A, et al. Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271(T)). Standards in Genomic Sciences. 9: 462-72. PMID 25197432 DOI: 10.4056/sigs.4458283  0.96
2014 Cimermancic P, Medema MH, Claesen J, Kurita K, Wieland Brown LC, Mavrommatis K, Pati A, Godfrey PA, Koehrsen M, Clardy J, Birren BW, Takano E, Sali A, Linington RG, Fischbach MA. Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters. Cell. 158: 412-21. PMID 25036635 DOI: 10.1016/j.cell.2014.06.034  0.96
2014 Hawley ER, Malfatti SA, Pagani I, Huntemann M, Chen A, Foster B, Copeland A, del Rio TG, Pati A, Jansson JR, Gilbert JA, Tringe SG, Lorenson TD, Hess M. Metagenomes from two microbial consortia associated with Santa Barbara seep oil. Marine Genomics. 18: 97-9. PMID 24958360 DOI: 10.1016/j.margen.2014.06.003  0.96
2014 Ivanova NN, Schwientek P, Tripp HJ, Rinke C, Pati A, Huntemann M, Visel A, Woyke T, Kyrpides NC, Rubin EM. Stop codon reassignments in the wild. Science (New York, N.Y.). 344: 909-13. PMID 24855270 DOI: 10.1126/science.1250691  0.96
2013 Terpolilli J, Garau G, Hill Y, Tian R, Howieson J, Bräu L, Goodwin L, Han J, Liolios K, Huntemann M, Pati A, Woyke T, Mavromatis K, Markowitz V, Ivanova N, et al. Genome sequence of Ensifer medicae strain WSM1369; an effective microsymbiont of the annual legume Medicago sphaerocarpos. Standards in Genomic Sciences. 9: 420-30. PMID 24976897 DOI: 10.4056/sigs.4838624  0.96
2013 Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Gu W, Goodwin L, Detter C, Tapia R, Han C, Copeland A, Liolios K, Chen A, Markowitz V, ... Pati A, et al. Complete genome sequence of Mesorhizobium australicum type strain (WSM2073(T)). Standards in Genomic Sciences. 9: 410-9. PMID 24976896 DOI: 10.4056/sigs.4568282  0.96
2013 Reeve W, De Meyer S, Terpolilli J, Melino V, Ardley J, Rui T, Tiwari R, Howieson J, Yates R, O'Hara G, Lu M, Bruce D, Detter C, Tapia R, Han C, ... ... Pati A, et al. Genome sequence of the Lebeckia ambigua-nodulating "Burkholderia sprentiae" strain WSM5005(T.). Standards in Genomic Sciences. 9: 385-94. PMID 24976894 DOI: 10.4056/sigs.4558268  0.96
2013 Khanna N, Ghosh AK, Huntemann M, Deshpande S, Han J, Chen A, Kyrpides N, Mavrommatis K, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, et al. Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production. Standards in Genomic Sciences. 9: 359-69. PMID 24976892 DOI: 10.4056/sigs.4348035  0.96
2013 Dogs M, Voget S, Teshima H, Petersen J, Davenport K, Dalingault H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Standfest S, Rohde M, Gronow S, et al. Genome sequence of Phaeobacter inhibens type strain (T5(T)), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens. Standards in Genomic Sciences. 9: 334-50. PMID 24976890 DOI: 10.4056/sigs.4448212  0.96
2013 Galardini M, Bazzicalupo M, Biondi E, Brambilla E, Brilli M, Bruce D, Chain P, Chen A, Daligault H, Davenport KW, Deshpande S, Detter JC, Goodwin LA, Han C, Han J, ... ... Pati A, et al. Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58. Standards in Genomic Sciences. 9: 325-33. PMID 24976889 DOI: 10.4056/sigs.3797438  0.96
2013 Terpolilli J, Hill Y, Tian R, Howieson J, Bräu L, Goodwin L, Han J, Liolios K, Huntemann M, Pati A, Woyke T, Mavromatis K, Markowitz V, Ivanova N, Kyrpides N, et al. Genome sequence of Ensifer meliloti strain WSM1022; a highly effective microsymbiont of the model legume Medicago truncatula A17. Standards in Genomic Sciences. 9: 315-24. PMID 24976888 DOI: 10.4056/sigs.4608286  0.96
2013 Tak N, Gehlot HS, Kaushik M, Choudhary S, Tiwari R, Tian R, Hill Y, Bräu L, Goodwin L, Han J, Liolios K, Huntemann M, Palaniappan K, Pati A, Mavromatis K, et al. Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert. Standards in Genomic Sciences. 9: 304-14. PMID 24976887 DOI: 10.4056/sigs.4598281  0.96
2013 Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Chertkov O, Goodwin L, Bruce D, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, ... ... Pati A, et al. Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.). Standards in Genomic Sciences. 9: 294-303. PMID 24976886 DOI: 10.4056/sigs.4538264  0.96
2013 Reeve W, Melino V, Ardley J, Tian R, De Meyer S, Terpolilli J, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Held B, Bruce D, Detter C, Tapia R, ... ... Pati A, et al. Genome sequence of the Trifolium rueppellianum -nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012. Standards in Genomic Sciences. 9: 283-93. PMID 24976885 DOI: 10.4056/sigs.4528262  0.96
2013 Reeve W, Terpolilli J, Melino V, Ardley J, Tian R, De Meyer S, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Teshima H, Bruce D, Detter C, Tapia R, ... ... Pati A, et al. Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417. Standards in Genomic Sciences. 9: 273-82. PMID 24976884 DOI: 10.4056/sigs.4518260  0.96
2013 Reeve W, Terpolilli J, Melino V, Ardley J, Tian R, De Meyer S, Tiwari R, Yates R, O'Hara G, Howieson J, Ninawi M, Held B, Bruce D, Detter C, Tapia R, ... ... Pati A, et al. Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597. Standards in Genomic Sciences. 9: 264-72. PMID 24976883 DOI: 10.4056/sigs.4508258  0.96
2013 Reeve W, De Meyer S, Terpolilli J, Melino V, Ardley J, Tian R, Tiwari R, Howieson J, Yates R, O'Hara G, Ninawi M, Lu M, Bruce D, Detter C, Tapia R, ... ... Pati A, et al. Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471. Standards in Genomic Sciences. 9: 254-63. PMID 24976882 DOI: 10.4056/sigs.4498256  0.96
2013 Reeve W, Tian R, De Meyer S, Melino V, Terpolilli J, Ardley J, Tiwari R, Howieson J, Yates R, O'Hara G, Ninawi M, Teshima H, Bruce D, Detter C, Tapia R, ... ... Pati A, et al. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain TA1. Standards in Genomic Sciences. 9: 243-53. PMID 24976881 DOI: 10.4056/sigs.4488254  0.96
2013 Reeve W, Drew E, Ballard R, Melino V, Tian R, De Meyer S, Brau L, Ninawi M, Teshima H, Goodwin L, Chain P, Liolios K, Pati A, Mavromatis K, Ivanova N, et al. Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565. Standards in Genomic Sciences. 9: 220-31. PMID 24976879 DOI: 10.4056/sigs.4468250  0.96
2013 Dogs M, Teshima H, Petersen J, Fiebig A, Chertkov O, Dalingault H, Chen A, Pati A, Goodwin LA, Chain P, Detter JC, Ivanova N, Lapidus A, Rohde M, Gronow S, et al. Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. Standards in Genomic Sciences. 9: 142-59. PMID 24501652 DOI: 10.4056/sigs.4287962  0.96
2013 Buddruhs N, Chertkov O, Petersen J, Fiebig A, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Gronow S, Kyrpides NC, Woyke T, Göker M, et al. Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade. Standards in Genomic Sciences. 9: 128-41. PMID 24501651 DOI: 10.4056/sigs.4297965  0.96
2013 Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, ... ... Pati A, et al. Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences. 9: 83-92. PMID 24501647 DOI: 10.4056/sigs.4338002  0.96
2013 Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Pati A, et al. Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences. 9: 57-70. PMID 24501645 DOI: 10.4056/sigs.4237901  0.96
2013 Freese HM, Dalingault H, Petersen J, Pradella S, Davenport K, Teshima H, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, et al. Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.). Standards in Genomic Sciences. 8: 450-64. PMID 24501630 DOI: 10.4056/sigs.383362  0.96
2013 Neupane S, Goodwin LA, Högberg N, Kyrpides NC, Alström S, Bruce D, Quintana B, Munk C, Daligault H, Teshima H, Davenport K, Reitenga K, Green L, Chain P, Erkkila T, ... ... Pati A, et al. Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4. Standards in Genomic Sciences. 8: 441-9. PMID 24501629 DOI: 10.4056/sigs.4027757  0.96
2013 Beyersmann PG, Chertkov O, Petersen J, Fiebig A, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, et al. Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade. Standards in Genomic Sciences. 8: 403-19. PMID 24501626 DOI: 10.4056/sigs.3927623  0.96
2013 Riedel T, Teshima H, Petersen J, Fiebig A, Davenport K, Daligault H, Erkkila T, Gu W, Munk C, Xu Y, Chen A, Pati A, Ivanova N, Goodwin LA, Chain P, et al. Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements. Standards in Genomic Sciences. 8: 389-402. PMID 24501625 DOI: 10.4056/sigs.3858183  0.96
2013 Kruse T, Maillard J, Goodwin L, Woyke T, Teshima H, Bruce D, Detter C, Tapia R, Han C, Huntemann M, Wei CL, Han J, Chen A, Kyrpides N, Szeto E, ... ... Pati A, et al. Complete genome sequence of Dehalobacter restrictus PER-K23(T.). Standards in Genomic Sciences. 8: 375-88. PMID 24501624 DOI: 10.4056/sigs.3787426  0.96
2011 Pati A, Heath LS, Kyrpides NC, Ivanova N. ClaMS: A Classifier for Metagenomic Sequences. Standards in Genomic Sciences. 5: 248-53. PMID 22180827 DOI: 10.4056/sigs.2075298  0.96
2008 Pati A, Jin Y, Klage K, Helm RF, Heath LS, Ramakrishnan N. CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining. Nucleic Acids Research. 36: D69-76. PMID 17942411 DOI: 10.1093/nar/gkm804  0.96
2007 Heath LS, Pati A. Predicting Markov chain order in genomic sequences Proceedings - 2007 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2007. 159-164. DOI: 10.1109/BIBM.2007.24  0.96
2007 Heath LS, Pati A. Genomic signatures from DNA word graphs Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4463: 317-328.  0.96
2007 Heath LS, Pati A. Genomic signatures in de Bruijn chains Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4645: 216-227.  0.96
2006 Pati A, Vasquez-Robinet C, Heath LS, Grene R, Murali TM. XcisClique: analysis of regulatory bicliques. Bmc Bioinformatics. 7: 218. PMID 16630346 DOI: 10.1186/1471-2105-7-218  0.96
2005 Shashanka MVS, Pati A, Shende AM. A characterisation of optimal channel assignments for cellular and square grid wireless networks Mobile Networks and Applications. 10: 89-98. DOI: 10.1023/B:MONE.0000048548.19218.c6  0.96
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