Christina Kendziorski - Publications

University of Wisconsin, Madison, Madison, WI 
Statistics, Bioinformatics Biology, Biostatistics Biology

6/102 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2009 Choi Y, Kendziorski C. Statistical methods for gene set co-expression analysis. Bioinformatics (Oxford, England). 25: 2780-6. PMID 19689953 DOI: 10.1093/bioinformatics/btp502  0.76
2008 Flowers MT, Keller MP, Choi Y, Lan H, Kendziorski C, Ntambi JM, Attie AD. Liver gene expression analysis reveals endoplasmic reticulum stress and metabolic dysfunction in SCD1-deficient mice fed a very low-fat diet. Physiological Genomics. 33: 361-72. PMID 18381840 DOI: 10.1152/physiolgenomics.00139.2007  0.76
2008 Keller MP, Choi Y, Wang P, Davis DB, Rabaglia ME, Oler AT, Stapleton DS, Argmann C, Schueler KL, Edwards S, Steinberg HA, Chaibub Neto E, Kleinhanz R, Turner S, Hellerstein MK, ... ... Kendziorski C, et al. A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility. Genome Research. 18: 706-16. PMID 18347327 DOI: 10.1101/gr.074914.107  0.76
2007 Wang H, Teske D, Tess A, Kohlhepp R, Choi Y, Kendziorski C, Moser AR. Identification of novel modifier loci of Apc Min affecting mammary tumor development. Cancer Research. 67: 11226-33. PMID 18056448 DOI: 10.1158/0008-5472.CAN-07-2487  0.76
2007 Flowers JB, Oler AT, Nadler ST, Choi Y, Schueler KL, Yandell BS, Kendziorski CM, Attie AD. Abdominal obesity in BTBR male mice is associated with peripheral but not hepatic insulin resistance. American Journal of Physiology. Endocrinology and Metabolism. 292: E936-45. PMID 17132824 DOI: 10.1152/ajpendo.00370.2006  0.76
2006 Flowers MT, Groen AK, Oler AT, Keller MP, Choi Y, Schueler KL, Richards OC, Lan H, Miyazaki M, Kuipers F, Kendziorski CM, Ntambi JM, Attie AD. Cholestasis and hypercholesterolemia in SCD1-deficient mice fed a low-fat, high-carbohydrate diet. Journal of Lipid Research. 47: 2668-80. PMID 17005996 DOI: 10.1194/jlr.M600203-JLR200  0.76
Low-probability matches
2009 Hopkins WJ, Elkahwaji J, Kendziorski C, Moser AR, Briggs PM, Suhs KA. Quantitative trait loci associated with susceptibility to bladder and kidney infections induced by Escherichia coli in female C3H/HeJ mice. The Journal of Infectious Diseases. 199: 355-61. PMID 19061424 DOI: 10.1086/595987  0.24
2019 Keller MP, Rabaglia ME, Schueler KL, Stapleton DS, Gatti DM, Vincent M, Mitok KA, Wang Z, Ishimura T, Simonett SP, Emfinger CH, Das R, Beck T, Kendziorski C, Broman KW, et al. Gene loci associated with insulin secretion in islets from non-diabetic mice. The Journal of Clinical Investigation. 130. PMID 31343992 DOI: 10.1172/JCI129143  0.16
2018 Keller MP, Gatti DM, Schueler KL, Rabaglia ME, Stapleton DS, Simecek P, Vincent M, Allen S, Broman AT, Bacher R, Kendziorski C, Broman KW, Yandell BS, Churchill GA, Attie AD. Genetic Drivers of Pancreatic Islet Function. Genetics. PMID 29567659 DOI: 10.1534/genetics.118.300864  0.16
2017 Ye S, Bacher R, Keller MP, Attie AD, Kendziorski C. Statistical Methods for Latent Class Quantitative Trait Loci Mapping. Genetics. 206: 1309-1317. PMID 28550015 DOI: 10.1534/genetics.117.203885  0.16
2016 Keller MP, Paul PK, Rabaglia ME, Stapleton DS, Schueler KL, Broman AT, Ye SI, Leng N, Brandon CJ, Neto EC, Plaisier CL, Simonett SP, Kebede MA, Sheynkman GM, Klein MA, ... ... Kendziorski C, et al. The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets. Plos Genetics. 12: e1006466. PMID 27935966 DOI: 10.1371/journal.pgen.1006466  0.16
2016 Paul PK, Rabaglia ME, Wang CY, Stapleton DS, Leng N, Kendziorski C, Lewis PW, Keller MP, Attie AD. Histone chaperone ASF1B promotes human β-cell proliferation via recruitment of histone H3.3. Cell Cycle (Georgetown, Tex.). 15: 3191-3202. PMID 27753532 DOI: 10.1080/15384101.2016.1241914  0.16
2016 Tian J, Keller MP, Broman AT, Kendziorski C, Yandell BS, Attie AD, Broman KW. The Dissection of Expression Quantitative Trait Locus Hotspots. Genetics. 202: 1563-74. PMID 26837753 DOI: 10.1534/genetics.115.183624  0.16
2015 Tian J, Keller MP, Oler AT, Rabaglia ME, Schueler KL, Stapleton DS, Broman AT, Zhao W, Kendziorski C, Yandell BS, Hagenbuch B, Broman KW, Attie AD. Identification of the Bile Acid Transporter Slco1a6 as a Candidate Gene That Broadly Affects Gene Expression in Mouse Pancreatic Islets. Genetics. 201: 1253-62. PMID 26385979 DOI: 10.1534/genetics.115.179432  0.16
2015 Broman KW, Keller MP, Broman AT, Kendziorski C, Yandell BS, Sen Ś, Attie AD. Identification and Correction of Sample Mix-Ups in Expression Genetic Data: A Case Study. G3 (Bethesda, Md.). 5: 2177-86. PMID 26290572 DOI: 10.1534/g3.115.019778  0.16
2012 Tu Z, Keller MP, Zhang C, Rabaglia ME, Greenawalt DM, Yang X, Wang IM, Dai H, Bruss MD, Lum PY, Zhou YP, Kemp DM, Kendziorski C, Yandell BS, Attie AD, et al. Integrative analysis of a cross-loci regulation network identifies App as a gene regulating insulin secretion from pancreatic islets. Plos Genetics. 8: e1003107. PMID 23236292 DOI: 10.1371/journal.pgen.1003107  0.16
2012 Wang CY, Stapleton DS, Schueler KL, Rabaglia ME, Oler AT, Keller MP, Kendziorski CM, Broman KW, Yandell BS, Schadt EE, Attie AD. Tsc2, a positional candidate gene underlying a quantitative trait locus for hepatic steatosis. Journal of Lipid Research. 53: 1493-501. PMID 22628617 DOI: 10.1194/jlr.M025239  0.16
2011 Wang P, Dawson JA, Keller MP, Yandell BS, Thornberry NA, Zhang BB, Wang IM, Schadt EE, Attie AD, Kendziorski C. A model selection approach for expression quantitative trait loci (eQTL) mapping. Genetics. 187: 611-21. PMID 21115971 DOI: 10.1534/genetics.110.122796  0.16
2010 Zhong H, Beaulaurier J, Lum PY, Molony C, Yang X, Macneil DJ, Weingarth DT, Zhang B, Greenawalt D, Dobrin R, Hao K, Woo S, Fabre-Suver C, Qian S, Tota MR, ... ... Kendziorski CM, et al. Liver and adipose expression associated SNPs are enriched for association to type 2 diabetes. Plos Genetics. 6: e1000932. PMID 20463879 DOI: 10.1371/journal.pgen.1000932  0.16
2009 Zhao E, Keller MP, Rabaglia ME, Oler AT, Stapleton DS, Schueler KL, Neto EC, Moon JY, Wang P, Wang IM, Lum PY, Ivanovska I, Cleary M, Greenawalt D, Tsang J, ... ... Kendziorski C, et al. Obesity and genetics regulate microRNAs in islets, liver, and adipose of diabetic mice. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 20: 476-85. PMID 19727952 DOI: 10.1007/s00335-009-9217-2  0.16
2008 Ferrara CT, Wang P, Neto EC, Stevens RD, Bain JR, Wenner BR, Ilkayeva OR, Keller MP, Blasiole DA, Kendziorski C, Yandell BS, Newgard CB, Attie AD. Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling. Plos Genetics. 4: e1000034. PMID 18369453 DOI: 10.1371/journal.pgen.1000034  0.16
2006 Lan H, Chen M, Flowers JB, Yandell BS, Stapleton DS, Mata CM, Mui ET, Flowers MT, Schueler KL, Manly KF, Williams RW, Kendziorski C, Attie AD. Combined expression trait correlations and expression quantitative trait locus mapping. Plos Genetics. 2: e6. PMID 16424919 DOI: 10.1371/journal.pgen.0020006  0.16
2004 Churchill GA, Airey DC, Allayee H, Angel JM, Attie AD, Beatty J, Beavis WD, Belknap JK, Bennett B, Berrettini W, Bleich A, Bogue M, Broman KW, Buck KJ, Buckler E, ... ... Kendziorski C, et al. The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nature Genetics. 36: 1133-7. PMID 15514660 DOI: 10.1038/ng1104-1133  0.16
2003 Attie AD, Kendziorski CM. PGC-1alpha at the crossroads of type 2 diabetes. Nature Genetics. 34: 244-5. PMID 12833045 DOI: 10.1038/ng0703-244  0.16
2002 Ntambi JM, Miyazaki M, Stoehr JP, Lan H, Kendziorski CM, Yandell BS, Song Y, Cohen P, Friedman JM, Attie AD. Loss of stearoyl-CoA desaturase-1 function protects mice against adiposity. Proceedings of the National Academy of Sciences of the United States of America. 99: 11482-6. PMID 12177411 DOI: 10.1073/pnas.132384699  0.16
2015 Marty AJ, Broman AT, Zarnowski R, Dwyer TG, Bond LM, Lounes-Hadj Sahraoui A, Fontaine J, Ntambi JM, Keleş S, Kendziorski C, Gauthier GM. Fungal Morphology, Iron Homeostasis, and Lipid Metabolism Regulated by a GATA Transcription Factor in Blastomyces dermatitidis. Plos Pathogens. 11: e1004959. PMID 26114571 DOI: 10.1371/journal.ppat.1004959  0.12
2011 Flowers MT, Paton CM, O'Byrne SM, Schiesser K, Dawson JA, Blaner WS, Kendziorski C, Ntambi JM. Metabolic changes in skin caused by Scd1 deficiency: a focus on retinol metabolism. Plos One. 6: e19734. PMID 21573029 DOI: 10.1371/journal.pone.0019734  0.12
2003 Kendziorski CM, Newton MA, Lan H, Gould MN. On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Statistics in Medicine. 22: 3899-914. PMID 14673946 DOI: 10.1002/sim.1548  0.12
2007 Burleigh DW, Kendziorski CM, Choi YJ, Grindle KM, Grendell RL, Magness RR, Golos TG. Microarray analysis of BeWo and JEG3 trophoblast cell lines: identification of differentially expressed transcripts. Placenta. 28: 383-9. PMID 16797695 DOI: 10.1016/j.placenta.2006.05.001  0.08
2016 Chu LF, Leng N, Zhang J, Hou Z, Mamott D, Vereide DT, Choi J, Kendziorski C, Stewart R, Thomson JA. Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Genome Biology. 17: 173. PMID 27534536 DOI: 10.1186/s13059-016-1033-x  0.04
2016 Leng N, Choi J, Chu LF, Thomson JA, Kendziorski C, Stewart R. OEFinder: A user interface to identify and visualize ordering effects in single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 26743507 DOI: 10.1093/bioinformatics/btw004  0.04
2015 Bradley WH, Eng K, Le M, Mackinnon AC, Kendziorski C, Rader JS. Comparing gene expression data from formalin-fixed, paraffin embedded tissues and qPCR with that from snap-frozen tissue and microarrays for modeling outcomes of patients with ovarian carcinoma. Bmc Clinical Pathology. 15: 17. PMID 26412982 DOI: 10.1186/s12907-015-0017-1  0.04
2015 Bartlett RS, Gaston J, Yen TY, Ye S, Kendziorski C, Thibeault S. Biomechanical screening of vocal fold cell therapies. Tissue Engineering. Part A. PMID 26119510 DOI: 10.1089/ten.TEA.2015.0168  0.04
2015 Leng N, Li Y, McIntosh BE, Nguyen BK, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C. EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. Bioinformatics (Oxford, England). PMID 25847007 DOI: 10.1093/bioinformatics/btv193  0.04
2015 Tran KA, Jackson SA, Olufs ZP, Zaidan NZ, Leng N, Kendziorski C, Roy S, Sridharan R. Collaborative rewiring of the pluripotency network by chromatin and signalling modulating pathways. Nature Communications. 6: 6188. PMID 25650115 DOI: 10.1038/ncomms7188  0.04
2015 Welham NV, Ling C, Dawson JA, Kendziorski C, Thibeault SL, Yamashita M. Microarray-based characterization of differential gene expression during vocal fold wound healing in rats. Disease Models & Mechanisms. 8: 311-21. PMID 25592437 DOI: 10.1242/dmm.018366  0.04
2015 Leng N, Chu LF, Barry C, Li Y, Choi J, Li X, Jiang P, Stewart RM, Thomson JA, Kendziorski C. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments Nature Methods. DOI: 10.1038/nmeth.3549  0.04
2014 Christopherson MR, Dawson JA, Stevenson DM, Cunningham AC, Bramhacharya S, Weimer PJ, Kendziorski C, Suen G. Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis. Bmc Genomics. 15: 1066. PMID 25477200 DOI: 10.1186/1471-2164-15-1066  0.04
2014 Hines EA, Szakaly RJ, Leng N, Webster AT, Verheyden JM, Lashua AJ, Kendziorski C, Rosenthal LA, Gern JE, Sorkness RL, Sun X, Lemanske RF. Comparison of temporal transcriptomic profiles from immature lungs of two rat strains reveals a viral response signature associated with chronic lung dysfunction. Plos One. 9: e112997. PMID 25437859 DOI: 10.1371/journal.pone.0112997  0.04
2014 Kennedy-Darling J, Guillen-Ahlers H, Shortreed MR, Scalf M, Frey BL, Kendziorski C, Olivier M, Gasch AP, Smith LM. Discovery of Chromatin-Associated Proteins via Sequence-Specific Capture and Mass Spectrometric Protein Identification in Saccharomyces cerevisiae. Journal of Proteome Research. PMID 24999558 DOI: 10.1021/pr5004938  0.04
2014 St John HC, Bishop KA, Meyer MB, Benkusky NA, Leng N, Kendziorski C, Bonewald LF, Pike JW. The osteoblast to osteocyte transition: epigenetic changes and response to the vitamin D3 hormone. Molecular Endocrinology (Baltimore, Md.). 28: 1150-65. PMID 24877565 DOI: 10.1210/me.2014-1091  0.04
2014 Iruretagoyena JI, Davis W, Bird C, Olsen J, Radue R, Teo Broman A, Kendziorski C, Splinter BonDurant S, Golos T, Bird I, Shah D. Metabolic gene profile in early human fetal heart development. Molecular Human Reproduction. 20: 690-700. PMID 24674993 DOI: 10.1093/molehr/gau026  0.04
2014 Iruretagoyena JI, Davis W, Bird C, Olsen J, Radue R, Teo Broman A, Kendziorski C, Splinter BonDurant S, Golos T, Bird I, Shah D. Differential changes in gene expression in human brain during late first trimester and early second trimester of pregnancy. Prenatal Diagnosis. 34: 431-7. PMID 24436137 DOI: 10.1002/pd.4322  0.04
2013 Jiang YZ, Wang K, Li Y, Dai CF, Wang P, Kendziorski C, Chen DB, Zheng J. Enhanced cellular responses and distinct gene profiles in human fetoplacental artery endothelial cells under chronic low oxygen. Biology of Reproduction. 89: 133. PMID 24152727 DOI: 10.1095/biolreprod.113.110551  0.04
2013 Ray M, Goldstein S, Zhou S, Potamousis K, Sarkar D, Newton MA, Esterberg E, Kendziorski C, Bogler O, Schwartz DC. Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis. Bmc Genomics. 14: 505. PMID 23885787 DOI: 10.1186/1471-2164-14-505  0.04
2013 Smits BM, Haag JD, Rissman AI, Sharma D, Tran A, Schoenborn AA, Baird RC, Peiffer DS, Leinweber DQ, Muelbl MJ, Meilahn AL, Eichelberg MR, Leng N, Kendziorski C, John MC, et al. The gene desert mammary carcinoma susceptibility locus Mcs1a regulates Nr2f1 modifying mammary epithelial cell differentiation and proliferation. Plos Genetics. 9: e1003549. PMID 23785296 DOI: 10.1371/journal.pgen.1003549  0.04
2013 Jiang YZ, Wang K, Li Y, Dai CF, Wang P, Kendziorski C, Chen DB, Zheng J. Transcriptional and functional adaptations of human endothelial cells to physiological chronic low oxygen. Biology of Reproduction. 88: 114. PMID 23536375 DOI: 10.1095/biolreprod.113.108225  0.04
2013 Leng N, Dawson JA, Thomson JA, Ruotti V, Rissman AI, Smits BM, Haag JD, Gould MN, Stewart RM, Kendziorski C. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (Oxford, England). 29: 1035-43. PMID 23428641 DOI: 10.1093/bioinformatics/btt087  0.04
2013 Anderson SA, Nizzi CP, Chang YI, Deck KM, Schmidt PJ, Galy B, Damnernsawad A, Broman AT, Kendziorski C, Hentze MW, Fleming MD, Zhang J, Eisenstein RS. The IRP1-HIF-2α axis coordinates iron and oxygen sensing with erythropoiesis and iron absorption. Cell Metabolism. 17: 282-90. PMID 23395174 DOI: 10.1016/j.cmet.2013.01.007  0.04
2013 Eng KH, Wang S, Bradley WH, Rader JS, Kendziorski C. Pathway index models for construction of patient-specific risk profiles. Statistics in Medicine. 32: 1524-35. PMID 23074142 DOI: 10.1002/sim.5641  0.04
2012 Bagley BN, Keane TM, Maklakova VI, Marshall JG, Lester RA, Cancel MM, Paulsen AR, Bendzick LE, Been RA, Kogan SC, Cormier RT, Kendziorski C, Adams DJ, Collier LS. A dominantly acting murine allele of Mcm4 causes chromosomal abnormalities and promotes tumorigenesis. Plos Genetics. 8: e1003034. PMID 23133403 DOI: 10.1371/journal.pgen.1003034  0.04
2012 Newton MA, He Q, Kendziorski C. A model-based analysis to infer the functional content of a gene list. Statistical Applications in Genetics and Molecular Biology. 11. PMID 22499692 DOI: 10.2202/1544-6115.1716  0.04
2009 Andrei A, Kendziorski C. An efficient method for identifying statistical interactors in gene association networks. Biostatistics (Oxford, England). 10: 706-18. PMID 19625345 DOI: 10.1093/biostatistics/kxp025  0.04
2007 Chen D, Wang P, Lewis RL, Daigh CA, Ho C, Chen X, Thomson JA, Kendziorski C. A microarray analysis of the emergence of embryonic definitive hematopoiesis. Experimental Hematology. 35: 1344-57. PMID 17761287 DOI: 10.1016/j.exphem.2007.06.004  0.04
2007 Amos-Landgraf JM, Kwong LN, Kendziorski CM, Reichelderfer M, Torrealba J, Weichert J, Haag JD, Chen KS, Waller JL, Gould MN, Dove WF. A target-selected Apc-mutant rat kindred enhances the modeling of familial human colon cancer. Proceedings of the National Academy of Sciences of the United States of America. 104: 4036-41. PMID 17360473 DOI: 10.1073/pnas.0611690104  0.04
2005 Holzmacher R, Kendziorski C, Michael Hofman R, Jaffery J, Becker B, Djamali A. Low serum magnesium is associated with decreased graft survival in patients with chronic cyclosporin nephrotoxicity. Nephrology, Dialysis, Transplantation : Official Publication of the European Dialysis and Transplant Association - European Renal Association. 20: 1456-62. PMID 15840674 DOI: 10.1093/ndt/gfh831  0.04
2005 Kendziorski C, Irizarry RA, Chen KS, Haag JD, Gould MN. On the utility of pooling biological samples in microarray experiments. Proceedings of the National Academy of Sciences of the United States of America. 102: 4252-7. PMID 15755808 DOI: 10.1073/pnas.0500607102  0.04
2003 Djamali A, Kendziorski C, Brazy PC, Becker BN. Disease progression and outcomes in chronic kidney disease and renal transplantation. Kidney International. 64: 1800-7. PMID 14531814 DOI: 10.1046/j.1523-1755.2003.00270.x  0.04
2001 Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 8: 37-52. PMID 11339905 DOI: 10.1089/106652701300099074  0.04
2020 Fogg KC, Miller AE, Li Y, Flanigan W, Walker A, O'Shea A, Kendziorski C, Kreeger PK. Ovarian cancer cells direct monocyte differentiation through a non-canonical pathway. Bmc Cancer. 20: 1008. PMID 33069212 DOI: 10.1186/s12885-020-07513-w  0.01
2020 Seirup M, Chu LF, Sengupta S, Leng N, Browder H, Kapadia K, Shafer CM, Duffin B, Elwell AL, Bolin JM, Swanson S, Stewart R, Kendziorski C, Thomson JA, Bacher R. Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis. Plos One. 15: e0239711. PMID 32986734 DOI: 10.1371/journal.pone.0239711  0.01
2020 Ni Z, Chen S, Brown J, Kendziorski C. CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data. Genome Biology. 21: 137. PMID 32513247 DOI: 10.1186/s13059-020-02054-8  0.01
2019 Barry C, Schmitz MT, Argus C, Bolin JM, Probasco MD, Leng N, Duffin BM, Steill J, Swanson S, McIntosh BE, Stewart R, Kendziorski C, Thomson JA, Bacher R. Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. Plos Computational Biology. 15: e1007543. PMID 31815944 DOI: 10.1371/journal.pcbi.1007543  0.01
2019 Lungova V, Chen X, Wang Z, Kendziorski C, Thibeault SL. Human induced pluripotent stem cell-derived vocal fold mucosa mimics development and responses to smoke exposure. Nature Communications. 10: 4161. PMID 31551422 DOI: 10.1038/s41467-019-12069-w  0.01
2019 Chu LF, Mamott D, Ni Z, Bacher R, Liu C, Swanson S, Kendziorski C, Stewart R, Thomson JA. An In Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells. Cell Reports. 28: 2247-2255.e5. PMID 31461642 DOI: 10.1016/j.celrep.2019.07.090  0.01
2019 Bradley RA, Shireman J, McFalls C, Choi J, Canfield SG, Dong Y, Liu K, Lisota B, Jones JR, Petersen A, Bhattacharyya A, Palecek SP, Shusta EV, Kendziorski C, Zhang SC. Regionally specified human pluripotent stem cell-derived astrocytes exhibit different molecular signatures and functional properties. Development (Cambridge, England). PMID 31189664 DOI: 10.1242/dev.170910  0.01
2019 Kishimoto Y, Yamashita M, Wei A, Toya Y, Ye S, Kendziorski C, Welham NV. Reversal of Vocal Fold Mucosal Fibrosis Using siRNA against the Collagen-Specific Chaperone Serpinh1. Molecular Therapy. Nucleic Acids. 16: 616-625. PMID 31100613 DOI: 10.1016/j.omtn.2019.04.014  0.01
2019 Foote AG, Wang Z, Kendziorski C, Thibeault SL. Tissue specific human fibroblast differential expression based on RNAsequencing analysis. Bmc Genomics. 20: 308. PMID 31014251 DOI: 10.1186/s12864-019-5682-5  0.01
2019 Karim A, Wang Z, Glover CR, Kendziorski C, Gibson A. 40 M2 Macrophages May Mitigate Burn Inflammation and Promote Wound Healing Journal of Burn Care & Research. 40: S29-S30. DOI: 10.1093/JBCR/IRZ013.044  0.01
2019 Blitzer G, Wang A, Brown J, Burr A, Matkowskyj K, Schuppener L, Kovacs K, Witt J, Kendziorski C, Iyer G, Baschnagel A. Tumor Lymphocyte, Macrophage, and GITR Changes in Tissue Microarray and RNA Sequencing of Patients with and without Neoadjuvant Radiation Therapy for Pancreatic Cancer International Journal of Radiation Oncology*Biology*Physics. 105: S207. DOI: 10.1016/j.ijrobp.2019.06.278  0.01
2018 Karim AS, Yan A, Ocotl E, Bennett DD, Wang Z, Kendziorski C, Gibson ALF. Discordance between histologic and visual assessment of tissue viability in excised burn wound tissue. Wound Repair and Regeneration : Official Publication of the Wound Healing Society [and] the European Tissue Repair Society. PMID 30585657 DOI: 10.1111/wrr.12692  0.01
2018 Bartlett RS, Gaston JD, Ye S, Kendziorski C, Thibeault SL. Mechanotransduction of vocal fold fibroblasts and mesenchymal stromal cells in the context of the vocal fold mechanome. Journal of Biomechanics. PMID 30553439 DOI: 10.1016/j.jbiomech.2018.11.050  0.01
2018 Jones JR, Kong L, Hanna MG, Hoffman B, Krencik R, Bradley R, Hagemann T, Choi J, Doers M, Dubovis M, Sherafat MA, Bhattacharyya A, Kendziorski C, Audhya A, Messing A, et al. Mutations in GFAP Disrupt the Distribution and Function of Organelles in Human Astrocytes. Cell Reports. 25: 947-958.e4. PMID 30355500 DOI: 10.1016/j.celrep.2018.09.083  0.01
2018 Bacher R, Leng N, Chu LF, Ni Z, Thomson JA, Kendziorski C, Stewart R. Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments. Bmc Bioinformatics. 19: 380. PMID 30326833 DOI: 10.1186/s12859-018-2405-x  0.01
2018 Palatnik A, Ye S, Kendziorski C, Iden M, Zigman JS, Hessner MJ, Rader JS. Correction: Identification of a serum-induced transcriptional signature associated with metastatic cervical cancer. Plos One. 13: e0193687. PMID 29474459 DOI: 10.1371/journal.pone.0193687  0.01
2017 Gasch AP, Yu FB, Hose J, Escalante LE, Place M, Bacher R, Kanbar J, Ciobanu D, Sandor L, Grigoriev IV, Kendziorski C, Quake SR, McClean MN. Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress. Plos Biology. 15: e2004050. PMID 29240790 DOI: 10.1371/journal.pbio.2004050  0.01
2017 Choi J, Ye S, Eng KH, Korthauer K, Bradley WH, Rader JS, Kendziorski C. IPI59: An Actionable Biomarker to Improve Treatment Response in Serous Ovarian Carcinoma Patients. Statistics in Biosciences. 9: 1-12. PMID 28966695 DOI: 10.1007/s12561-016-9144-1  0.01
2017 Palatnik A, Ye S, Kendziorski C, Iden M, Zigman JS, Hessner MJ, Rader JS. Identification of a serum-induced transcriptional signature associated with metastatic cervical cancer. Plos One. 12: e0181242. PMID 28854209 DOI: 10.1371/journal.pone.0181242  0.01
2017 Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. SCnorm: robust normalization of single-cell RNA-seq data. Nature Methods. PMID 28418000 DOI: 10.1038/nmeth.4263  0.01
2016 Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 17: 222. PMID 27782827 DOI: 10.1186/s13059-016-1077-y  0.01
2016 Kishimoto Y, Kishimoto AO, Ye S, Kendziorski C, Welham NV. Modeling fibrosis using fibroblasts isolated from scarred rat vocal folds. Laboratory Investigation; a Journal of Technical Methods and Pathology. PMID 27111284 DOI: 10.1038/labinvest.2016.43  0.01
2016 Bacher R, Kendziorski C. Design and computational analysis of single-cell RNA-sequencing experiments. Genome Biology. 17: 63. PMID 27052890 DOI: 10.1186/s13059-016-0927-y  0.01
2015 Leng N, Chu LF, Barry C, Li Y, Choi J, Li X, Jiang P, Stewart RM, Thomson JA, Kendziorski C. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. Nature Methods. 12: 947-50. PMID 26301841 DOI: 10.1038/nmeth.3549  0.01
2015 Korthauer KD, Kendziorski C. MADGiC: a model-based approach for identifying driver genes in cancer. Bioinformatics (Oxford, England). 31: 1526-35. PMID 25573922 DOI: 10.1093/bioinformatics/btu858  0.01
2014 Ye S, Dawson JA, Kendziorski C. Extending information retrieval methods to personalized genomic-based studies of disease. Cancer Informatics. 13: 85-95. PMID 25733795 DOI: 10.4137/CIN.S16354  0.01
2014 Song C, Chung L, Pan X, Zhanjun L, Ding Y, Sachdev M, Muthusami S, Gowda CS, Ge Z, Steffens S, Tan B, Kendziorski C, Newton M, Dovat S. Chromatin State Shaping the Gene Expression Profiling in the Inducible Differentiation of Promyelocytic Leukemia Cells Blood. 124: 5188-5188. DOI: 10.1182/blood.v124.21.5188.5188  0.01
2013 Bradley W, Eng K, Kendziorski C, Le M, Mackinnon C, Rader J. Gene expression levels in archived FFPE ovarian carcinoma samples: Comparison of qPCR with tissue microarray in a 9-core pathway predictive treatment model in serous ovarian carcinoma Gynecologic Oncology. 130: e136-e137. DOI: 10.1016/J.YGYNO.2013.04.389  0.01
2012 Dawson JA, Ye S, Kendziorski C. R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression. Bioinformatics (Oxford, England). 28: 1939-40. PMID 22595207 DOI: 10.1093/bioinformatics/bts268  0.01
2012 Dawson JA, Kendziorski C. An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments. Biometrics. 68: 455-65. PMID 22004327 DOI: 10.1111/j.1541-0420.2011.01688.x  0.01
2012 Fleming J, Isaak A, Hardin LV, Huston J, Boland J, Broman AT, Kendziorski C, Field A, Fabry Z. Temporal Changes in MRI Activity, Inflammation, Immunomodulation, and Gene Expression in Relapsing-Remitting Multiple Sclerosis Subjects Treated with Helminth Probiotic Trichuris Suis (S30.004) Neurology. 78: S30.004-S30.004. DOI: 10.1212/wnl.78.1_meetingabstracts.s30.004  0.01
2012 Iruretagoyena JI, Davis W, Kendziorski C, Bird C, Radue R, Bromar AT, Spliinter-Bondurant S, Golos T, Bird I, Shah D. 412: Human fetal heart development during the first and second trimester American Journal of Obstetrics and Gynecology. 206: S191-S192. DOI: 10.1016/j.ajog.2011.10.430  0.01
2008 Mellman DL, Gonzales ML, Song C, Barlow CA, Wang P, Kendziorski C, Anderson RA. A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs. Nature. 451: 1013-7. PMID 18288197 DOI: 10.1038/nature06666  0.01
2008 Ferrara CT, Wang P, Neto EC, Stevens RD, Bain JR, Wenner BR, Ilkayeva OR, Keller MP, Blasiole DA, Kendziorski C, Yandell BS, Newgard CB, Attie AD. Correction: Genetic Networks of Liver Metabolism Revealed by Integration of Metabolic and Transcriptional Profiling Plos Genetics. 4. DOI: 10.1371/annotation/7989839d-0677-4f59-a218-f4ebb6fd0b66  0.01
2007 Chen M, Kendziorski C. A statistical framework for expression quantitative trait loci mapping. Genetics. 177: 761-71. PMID 17660576 DOI: 10.1534/genetics.107.071407  0.01
2007 Couto FM, Minn AH, Pise-Masison CA, Radonovich M, Brady JN, Hanson M, Fernandez LA, Wang P, Kendziorski C, Shalev A. Exenatide blocks JAK1-STAT1 in pancreatic beta cells. Metabolism: Clinical and Experimental. 56: 915-8. PMID 17570252 DOI: 10.1016/j.metabol.2007.02.004  0.01
2007 Edwards MG, Anderson RM, Yuan M, Kendziorski CM, Weindruch R, Prolla TA. Gene expression profiling of aging reveals activation of a p53-mediated transcriptional program. Bmc Genomics. 8: 80. PMID 17381838 DOI: 10.1186/1471-2164-8-80  0.01
2006 Yuan M, Kendziorski C. A unified approach for simultaneous gene clustering and differential expression identification. Biometrics. 62: 1089-98. PMID 17156283 DOI: 10.1111/j.1541-0420.2006.00611.x  0.01
2006 Kendziorski C, Wang P. A review of statistical methods for expression quantitative trait loci mapping. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 509-17. PMID 16783633 DOI: 10.1007/s00335-005-0189-6  0.01
2006 Kendziorski CM, Chen M, Yuan M, Lan H, Attie AD. Statistical methods for expression quantitative trait loci (eQTL) mapping. Biometrics. 62: 19-27. PMID 16542225 DOI: 10.1111/j.1541-0420.2005.00437.x  0.01
2006 Yuan M, Kendziorski C. Hidden Markov Models for Microarray Time Course Data in Multiple Biological Conditions Journal of the American Statistical Association. 101: 1323-1332. DOI: 10.1198/016214505000000394  0.01
2005 Minn AH, Pise-Masison CA, Radonovich M, Brady JN, Wang P, Kendziorski C, Shalev A. Gene expression profiling in INS-1 cells overexpressing thioredoxin-interacting protein. Biochemical and Biophysical Research Communications. 336: 770-8. PMID 16143294 DOI: 10.1016/j.bbrc.2005.08.161  0.01
2003 Kendziorski CM, Zhang Y, Lan H, Attie AD. The efficiency of pooling mRNA in microarray experiments. Biostatistics (Oxford, England). 4: 465-77. PMID 12925512 DOI: 10.1093/biostatistics/4.3.465  0.01
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