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Anthony Gitter, Ph.D. - Publications

Affiliations: 
2012 Carnegie Mellon University, Pittsburgh, PA 
Area:
Computer Science, Bioinformatics Biology
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Tuncbag N, Gosline SJ, Kedaigle A, Soltis AR, Gitter A, Fraenkel E. Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package. Plos Computational Biology. 12: e1004879. PMID 27096930 DOI: 10.1371/journal.pcbi.1004879  0.92
2016 Gitter A, Bar-Joseph Z. The SDREM Method for Reconstructing Signaling and Regulatory Response Networks: Applications for Studying Disease Progression. Methods in Molecular Biology (Clifton, N.J.). 1303: 493-506. PMID 26235087 DOI: 10.1007/978-1-4939-2627-5_30  0.92
2014 Jain S, Gitter A, Bar-Joseph Z. Multitask learning of signaling and regulatory networks with application to studying human response to flu. Plos Computational Biology. 10: e1003943. PMID 25522349 DOI: 10.1371/journal.pcbi.1003943  0.92
2014 Gitter A, Braunstein A, Pagnani A, Baldassi C, Borgs C, Chayes J, Zecchina R, Fraenkel E. Sharing information to reconstruct patient-specific pathways in heterogeneous diseases. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 39-50. PMID 24297532  0.92
2013 Gitter A, Bar-Joseph Z. Identifying proteins controlling key disease signaling pathways. Bioinformatics (Oxford, England). 29: i227-36. PMID 23812988 DOI: 10.1093/bioinformatics/btt241  0.92
2013 Gitter A, Carmi M, Barkai N, Bar-Joseph Z. Linking the signaling cascades and dynamic regulatory networks controlling stress responses. Genome Research. 23: 365-76. PMID 23064748 DOI: 10.1101/gr.138628.112  0.92
2012 Navlakha S, Gitter A, Bar-Joseph Z. A network-based approach for predicting missing pathway interactions. Plos Computational Biology. 8: e1002640. PMID 22916002 DOI: 10.1371/journal.pcbi.1002640  0.92
2012 Schulz MH, Devanny WE, Gitter A, Zhong S, Ernst J, Bar-Joseph Z. DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data. Bmc Systems Biology. 6: 104. PMID 22897824 DOI: 10.1186/1752-0509-6-104  0.92
2012 Bar-Joseph Z, Gitter A, Simon I. Studying and modelling dynamic biological processes using time-series gene expression data. Nature Reviews. Genetics. 13: 552-64. PMID 22805708 DOI: 10.1038/nrg3244  0.92
2011 Gitter A, Klein-Seetharaman J, Gupta A, Bar-Joseph Z. Discovering pathways by orienting edges in protein interaction networks. Nucleic Acids Research. 39: e22. PMID 21109539 DOI: 10.1093/nar/gkq1207  0.92
2010 Gitter A, Lu Y, Bar-Joseph Z. Computational methods for analyzing dynamic regulatory networks. Methods in Molecular Biology (Clifton, N.J.). 674: 419-41. PMID 20827605 DOI: 10.1007/978-1-60761-854-6_24  0.92
2009 Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. Backup in gene regulatory networks explains differences between binding and knockout results. Molecular Systems Biology. 5: 276. PMID 19536199 DOI: 10.1038/msb.2009.33  0.92
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