☰

Edward R. Dougherty - Publications

Affiliations: 
Electrical and Computer Engineering Texas A & M University, College Station, TX, United States 
Tree Info Similar researchers PubMed Report error

318 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kim E, Ivanov I, Dougherty ER. Network Classification based on Reducibility with respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network - a Boolean Network Modeling Perspective. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32750876 DOI: 10.1109/Tcbb.2020.3005313  0.385
2020 Zhao G, Qian X, Yoon B, Alexander FJ, Dougherty ER. Model-Based Robust Filtering and Experimental Design for Stochastic Differential Equation Systems Ieee Transactions On Signal Processing. 68: 3849-3859. DOI: 10.1109/Tsp.2020.3001384  0.316
2020 Braga-Neto UM, Dougherty ER. Machine Learning Requires Probability and Statistics [Perspectives] Ieee Signal Processing Magazine. 37: 118-122. DOI: 10.1109/Msp.2020.2985385  0.337
2020 Imani M, Dougherty ER, Braga-Neto U. Boolean Kalman filter and smoother under model uncertainty Automatica. 111: 108609. DOI: 10.1016/J.Automatica.2019.108609  0.388
2019 Hajiramezanali E, Imani M, Braga-Neto U, Qian X, Dougherty ER. Scalable optimal Bayesian classification of single-cell trajectories under regulatory model uncertainty. Bmc Genomics. 20: 435. PMID 31189480 DOI: 10.1186/S12864-019-5720-3  0.363
2019 Karbalayghareh A, Braga-Neto U, Dougherty ER. Classification of Single-Cell Gene Expression Trajectories from Incomplete and Noisy Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 16: 193-207. PMID 29053466 DOI: 10.1109/Tcbb.2017.2763946  0.382
2019 Zollanvari A, Dougherty ER. Optimal Bayesian Classification With Vector Autoregressive Data Dependency Ieee Transactions On Signal Processing. 67: 3073-3086. DOI: 10.1109/Tsp.2019.2912131  0.688
2018 Dehghannasiri R, Shahrokh Esfahani M, Dougherty ER. An experimental design framework for Markovian gene regulatory networks under stationary control policy. Bmc Systems Biology. 12: 137. PMID 30577732 DOI: 10.1186/S12918-018-0649-8  0.393
2018 Dalton LA, Benalcázar ME, Dougherty ER. Optimal clustering under uncertainty. Plos One. 13: e0204627. PMID 30278063 DOI: 10.1371/Journal.Pone.0204627  0.655
2018 Imani M, Dehghannasiri R, Braga-Neto UM, Dougherty ER. Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty. Cancer Informatics. 17: 1176935118790247. PMID 30093796 DOI: 10.1177/1176935118790247  0.372
2018 Kim E, Ivanov I, Dougherty ER. Quantifying the notions of canalizing and master genes in a gene regulatory network - a Boolean network modeling perspective. Bioinformatics (Oxford, England). PMID 30052771 DOI: 10.1093/Bioinformatics/Bty665  0.336
2018 Sima C, Hua J, Bittner ML, Kim S, Dougherty ER. Phenotype Classification Using Moment Features of Single-Cell Data. Cancer Informatics. 17: 1176935118771701. PMID 29881253 DOI: 10.1177/1176935118771701  0.716
2018 Karbalayghareh A, Braga-Neto U, Dougherty ER. Intrinsically Bayesian robust classifier for single-cell gene expression trajectories in gene regulatory networks. Bmc Systems Biology. 12: 23. PMID 29589564 DOI: 10.1186/S12918-018-0549-Y  0.371
2018 Dougherty ER, Boulesteix AL, Dalton LA, Zhang M. Guest Editorial-Special Collection Topic: Statistical Systems Theory in Cancer Modeling, Diagnosis, and Therapy. Cancer Informatics. 17: 1176935118760944. PMID 29531471 DOI: 10.1177/1176935118760944  0.668
2018 Mohsenizadeh DN, Dehghannasiri R, Dougherty ER. Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 15: 218-230. PMID 27576263 DOI: 10.1109/Tcbb.2016.2602873  0.369
2018 Dehghannasiri R, Qian X, Dougherty ER. A Bayesian robust Kalman smoothing framework for state-space models with uncertain noise statistics Eurasip Journal On Advances in Signal Processing. 2018. DOI: 10.1186/S13634-018-0577-1  0.364
2018 Dadaneh SZ, Dougherty ER, Qian X. Optimal Bayesian Classification With Missing Values Ieee Transactions On Signal Processing. 66: 4182-4192. DOI: 10.1109/Tsp.2018.2847660  0.376
2018 Dehghannasiri R, Esfahani MS, Qian X, Dougherty ER. Optimal Bayesian Kalman Filtering With Prior Update Ieee Transactions On Signal Processing. 66: 1982-1996. DOI: 10.1109/Tsp.2017.2788419  0.315
2018 Dehghannasiri R, Qian X, Dougherty ER. Intrinsically Bayesian robust Karhunen-Loève compression Signal Processing. 144: 311-322. DOI: 10.1016/J.Sigpro.2017.10.016  0.34
2018 Atashpaz-Gargari E, Reis MS, Braga-Neto UM, Barrera J, Dougherty ER. A fast Branch-and-Bound algorithm for U-curve feature selection Pattern Recognition. 73: 172-188. DOI: 10.1016/J.Patcog.2017.08.013  0.304
2017 Boluki S, Shahrokh Esfahani M, Qian X, Dougherty ER. Constructing Pathway-based Priors Within a Gaussian Mixture Model for Bayesian Regression and Classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990066 DOI: 10.1109/Tcbb.2017.2778715  0.387
2017 Boluki S, Esfahani MS, Qian X, Dougherty ER. Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors. Bmc Bioinformatics. 18: 552. PMID 29297278 DOI: 10.1186/S12859-017-1893-4  0.348
2017 Kim E, Ivanov I, Hua J, Lampe JW, Hullar MA, Chapkin RS, Dougherty ER. The Model-Based Study of the Effectiveness of Reporting Lists of Small Feature Sets Using RNA-Seq Data. Cancer Informatics. 16: 1176935117710530. PMID 28659712 DOI: 10.1177/1176935117710530  0.372
2017 Dehghannasiri R, Qian X, Dougherty ER. Optimal experimental design in the context of canonical expansions Iet Signal Processing. 11: 942-951. DOI: 10.1049/Iet-Spr.2017.0016  0.351
2017 Dehghannasiri R, Xue D, Balachandran PV, Yousefi MR, Dalton LA, Lookman T, Dougherty ER. Optimal experimental design for materials discovery Computational Materials Science. 129: 311-322. DOI: 10.1016/J.Commatsci.2016.11.041  0.644
2016 Qian X, Dougherty ER. Bayesian Regression with Network Prior: Optimal Bayesian Filtering Perspective. Ieee Transactions On Signal Processing : a Publication of the Ieee Signal Processing Society. 64: 6243-6253. PMID 28824268 DOI: 10.1109/Tsp.2016.2605072  0.349
2016 Karbalayghareh A, Braga-Neto U, Hua J, Dougherty ER. Classification of State Trajectories in Gene Regulatory Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 27740496 DOI: 10.1109/Tcbb.2016.2616470  0.411
2016 Coveney PV, Dougherty ER, Highfield RR. Big data need big theory too. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 374. PMID 27698035 DOI: 10.1098/Rsta.2016.0153  0.31
2016 Zollanvari A, Dougherty ER. Incorporating prior knowledge induced from stochastic differential equations in the classification of stochastic observations. Eurasip Journal On Bioinformatics & Systems Biology. 2016: 2. PMID 26834782 DOI: 10.1186/S13637-016-0036-Y  0.686
2015 Sima C, Hua J, Cypert M, Miller T, Wilson-Robles HM, Trent JM, Dougherty ER, Bittner ML. Assessing Combinational Drug Efficacy in Cancer Cells by Using Image-based Dynamic Response Analysis. Cancer Informatics. 14: 33-43. PMID 26997864 DOI: 10.4137/Cin.S30799  0.504
2015 Esfahani MS, Dougherty ER. An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 1304-21. PMID 26671803 DOI: 10.1109/Tcbb.2015.2424407  0.396
2015 Dehghannasiri R, Yoon BJ, Dougherty ER. Erratum to: Efficient experimental design for uncertainty reduction in gene regulatory networks. Bmc Bioinformatics. 16: 410. PMID 26652981 DOI: 10.1186/S12859-015-0839-Y  0.318
2015 Knight J, Ivanov I, Triff K, Chapkin R, Dougherty E. Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 26441451 DOI: 10.11145/470  0.356
2015 Mohsenizadeh DN, Hua J, Bittner M, Dougherty ER. Dynamical modeling of uncertain interaction-based genomic networks. Bmc Bioinformatics. 16: S3. PMID 26423606 DOI: 10.1186/1471-2105-16-S13-S3  0.355
2015 Dehghannasiri R, Yoon BJ, Dougherty ER. Efficient experimental design for uncertainty reduction in gene regulatory networks. Bmc Bioinformatics. 16: S2. PMID 26423515 DOI: 10.1186/1471-2105-16-S13-S2  0.398
2015 Dehghannasiri R, Byung-Jun Yoon, Dougherty ER. Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 938-50. PMID 26357334 DOI: 10.1109/Tcbb.2014.2377733  0.388
2015 Zollanvari A, Dougherty ER. Generalized consistent error estimator of linear discriminant analysis Ieee Transactions On Signal Processing. 63: 2804-2814. DOI: 10.1109/Tsp.2015.2419190  0.692
2015 Dalton LA, Benalcázar ME, Brun M, Dougherty ER. Analytic representation of bayes labeling and bayes clustering operators for random labeled point processes Ieee Transactions On Signal Processing. 63: 1605-1620. DOI: 10.1109/Tsp.2015.2399870  0.64
2015 Broumand A, Esfahani MS, Yoon BJ, Dougherty ER. Discrete optimal Bayesian classification with error-conditioned sequential sampling Pattern Recognition. 48: 3766-3782. DOI: 10.1016/J.Patcog.2015.03.023  0.391
2015 Dalton LA, Dougherty ER. Small-Sample Classification Springer Series in Materials Science. 225: 77-101. DOI: 10.1007/978-3-319-23871-5_4  0.602
2014 Vu T, Sima C, Braga-Neto UM, Dougherty ER. Unbiased bootstrap error estimation for linear discriminant analysis. Eurasip Journal On Bioinformatics & Systems Biology. 2014: 15. PMID 28194165 DOI: 10.1186/S13637-014-0015-0  0.593
2014 Fang J, Ouyang H, Shen L, Dougherty ER, Liu W. Using the minimum description length principle to reduce the rate of false positives of best-fit algorithms. Eurasip Journal On Bioinformatics & Systems Biology. 2014: 13. PMID 28194163 DOI: 10.1186/S13637-014-0013-2  0.351
2014 Esfahani MS, Dougherty ER. Incorporation of Biological Pathway Knowledge in the Construction of Priors for Optimal Bayesian Classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 202-18. PMID 26355519 DOI: 10.1109/Tcbb.2013.143  0.368
2014 Knight JM, Ivanov I, Dougherty ER. MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification. Bmc Bioinformatics. 15: 401. PMID 25491122 DOI: 10.1186/S12859-014-0401-3  0.391
2014 Braga-Neto UM, Zollanvari A, Dougherty ER. Cross-validation under separate sampling: strong bias and how to correct it. Bioinformatics (Oxford, England). 30: 3349-55. PMID 25123902 DOI: 10.1093/Bioinformatics/Btu527  0.667
2014 Ouyang H, Fang J, Shen L, Dougherty ER, Liu W. Learning restricted Boolean network model by time-series data. Eurasip Journal On Bioinformatics & Systems Biology. 2014: 10. PMID 25093019 DOI: 10.1186/S13637-014-0010-5  0.358
2014 Zollanvari A, Dougherty ER. Moments and Root-Mean-Square Error of the Bayesian MMSE Estimator of Classification Error in the Gaussian Model. Pattern Recognition. 47: 2178-2192. PMID 24729636 DOI: 10.1016/J.Patcog.2013.11.022  0.703
2014 Yousefi MR, Dougherty ER. A comparison study of optimal and suboptimal intervention policies for gene regulatory networks in the presence of uncertainty. Eurasip Journal On Bioinformatics & Systems Biology. 2014: 6. PMID 24708650 DOI: 10.1186/1687-4153-2014-6  0.376
2014 Hua J, Bittner ML, Dougherty ER. Evaluating gene set enrichment analysis via a hybrid data model. Cancer Informatics. 13: 1-16. PMID 24558298 DOI: 10.4137/Cin.S13305  0.337
2014 Shahrokh Esfahani M, Dougherty ER. Effect of separate sampling on classification accuracy. Bioinformatics (Oxford, England). 30: 242-50. PMID 24257187 DOI: 10.1093/Bioinformatics/Btt662  0.353
2014 Vu T, Sima C, Braga-Neto UM, Dougherty ER. Unbiased bootstrap error estimation for linear discriminant analysis Tijdschrift Voor Urologie. 2014: 1-14. DOI: 10.1186/s13637-014-0015-0  0.524
2014 Dalton LA, Dougherty ER. Intrinsically optimal bayesian robust filtering Ieee Transactions On Signal Processing. 62: 657-670. DOI: 10.1109/Tsp.2013.2291213  0.643
2013 Esfahani MS, Knight J, Zollanvari A, Yoon BJ, Dougherty ER. Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Phenotype Classification. Pattern Recognition. 46: 2783-2797. PMID 26279589 DOI: 10.1016/J.Patcog.2013.02.017  0.73
2013 Qian X, Dougherty ER. Validation of gene regulatory network inference based on controllability. Frontiers in Genetics. 4: 272. PMID 24376455 DOI: 10.3389/Fgene.2013.00272  0.4
2013 Ghaffari N, Yousefi MR, Johnson CD, Ivanov I, Dougherty ER. Modeling the next generation sequencing sample processing pipeline for the purposes of classification. Bmc Bioinformatics. 14: 307. PMID 24118904 DOI: 10.1186/1471-2105-14-307  0.694
2013 Zollanvari A, Hua J, Dougherty ER. Analytical Study of Performance of Linear Discriminant Analysis in Stochastic Settings. Pattern Recognition. 46: 3017-3029. PMID 24039299 DOI: 10.1016/J.Patcog.2013.04.002  0.703
2013 Dougherty ER, Dalton LA. Scientific knowledge is possible with small-sample classification. Eurasip Journal On Bioinformatics & Systems Biology. 2013: 10. PMID 23958425 DOI: 10.1186/1687-4153-2013-10  0.698
2013 Rezaei Yousefi M, Datta A, Dougherty E. Optimal Intervention in Markovian Gene Regulatory Networks with Random-Length Therapeutic Response to Antitumor Drug. Ieee Transactions On Bio-Medical Engineering. PMID 23864151 DOI: 10.1109/Tbme.2013.2272891  0.304
2013 Hsu FH, Dougherty ER, Chen Y, Serpedin E. Estimating conditional probabilities for the detection of unfavorable copy number alterations in a targeted therapy. Ieee Transactions On Bio-Medical Engineering. 60: 2933-42. PMID 23744663 DOI: 10.1109/Tbme.2013.2266356  0.34
2013 Yousefi MR, Dougherty ER. Intervention in gene regulatory networks with maximal phenotype alteration. Bioinformatics (Oxford, England). 29: 1758-67. PMID 23630177 DOI: 10.1093/Bioinformatics/Btt242  0.376
2013 Agyepong KS, Hsu FH, Dougherty ER, Serpedin E. Spectral analysis on time-course expression data: detecting periodic genes using a real-valued iterative adaptive approach. Advances in Bioinformatics. 2013: 171530. PMID 23533399 DOI: 10.1155/2013/171530  0.35
2013 Yoon BJ, Qian X, Dougherty ER. Quantifying the objective cost of uncertainty in complex dynamical systems Ieee Transactions On Signal Processing. 61: 2256-2266. DOI: 10.1109/Tsp.2013.2251336  0.35
2013 Zollanvari A, Hua J, Dougherty ER. Performance of linear discriminant analysis in stochastic settings Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3437-3441. DOI: 10.1109/ICASSP.2013.6638296  0.632
2013 Zollanvari A, Dougherty ER. Application of double asymptotics and random matrix theory in error estimation of regularized linear discriminant analysis 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 57-59. DOI: 10.1109/GlobalSIP.2013.6736811  0.65
2013 Zollanvari A, Braga-Neto UM, Dougherty ER. Effect of mixing probabilities on the bias of cross-validation under separate sampling Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 98-99. DOI: 10.1109/GENSIPS.2013.6735947  0.61
2013 Dalton LA, Benalcazar ME, Brun M, Dougherty ER. Bayes clustering operators for known random labeled point processes Conference Record - Asilomar Conference On Signals, Systems and Computers. 893-897. DOI: 10.1109/ACSSC.2013.6810417  0.581
2013 Zollanvari A, Dougherty ER. Random matrix theory in pattern classification: An application to error estimation Conference Record - Asilomar Conference On Signals, Systems and Computers. 884-887. DOI: 10.1109/ACSSC.2013.6810415  0.647
2013 Shahrokh Esfahani M, Knight J, Zollanvari A, Yoon BJ, Dougherty ER. Classifier design given an uncertainty class of feature distributions via regularized maximum likelihood and the incorporation of biological pathway knowledge in steady-state phenotype classification Pattern Recognition. 46: 2783-2797. DOI: 10.1016/j.patcog.2013.02.017  0.65
2013 Atashpaz-Gargari E, Sima C, Braga-Neto UM, Dougherty ER. Relationship between the accuracy of classifier error estimation and complexity of decision boundary Pattern Recognition. 46: 1315-1322. DOI: 10.1016/J.Patcog.2012.10.020  0.59
2013 Dalton LA, Dougherty ER. Optimal classifiers with minimum expected error within a Bayesian framework - Part II: Properties and performance analysis Pattern Recognition. 46: 1288-1300. DOI: 10.1016/J.Patcog.2012.10.019  0.698
2013 Dalton LA, Dougherty ER. Optimal classifiers with minimum expected error within a Bayesian framework - Part I: Discrete and Gaussian models Pattern Recognition. 46: 1301-1314. DOI: 10.1016/J.Patcog.2012.10.018  0.706
2013 Hanczar B, Dougherty ER. The reliability of estimated confidence intervals for classification error rates when only a single sample is available Pattern Recognition. 46: 1067-1077. DOI: 10.1016/J.Patcog.2012.09.019  0.365
2012 Nounou HN, Nounou MN, Meskin N, Datta A, Dougherty ER. Fuzzy intervention in biological phenomena. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1819-25. PMID 23221089 DOI: 10.1109/Tcbb.2012.113  0.329
2012 Hsu FH, Serpedin E, Hsiao TH, Bishop AJ, Dougherty ER, Chen Y. Reducing confounding and suppression effects in TCGA data: an integrated analysis of chemotherapy response in ovarian cancer. Bmc Genomics. 13: S13. PMID 23134756 DOI: 10.1186/1471-2164-13-S6-S13  0.318
2012 Sun Y, Braga-Neto U, Dougherty ER. A systematic model of the LC-MS proteomics pipeline. Bmc Genomics. 13: S2. PMID 23134670 DOI: 10.1186/1471-2164-13-S6-S2  0.781
2012 Hsu FH, Serpedin E, Chen Y, Dougherty ER. Evaluating dynamic effects of copy number alterations on gene expression using a single transcription model. Ieee Transactions On Bio-Medical Engineering. 59: 2726-36. PMID 22996722 DOI: 10.1109/Tbme.2012.2208749  0.323
2012 Yousefi MR, Dougherty ER. Performance reproducibility index for classification. Bioinformatics (Oxford, England). 28: 2824-33. PMID 22954625 DOI: 10.1093/Bioinformatics/Bts509  0.41
2012 Nounou MN, Nounou HN, Meskin N, Datta A, Dougherty ER. Multiscale denoising of biological data: a comparative analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1539-44. PMID 22566476 DOI: 10.1109/Tcbb.2012.67  0.315
2012 Hua J, Sima C, Cypert M, Gooden GC, Shack S, Alla L, Smith EA, Trent JM, Dougherty ER, Bittner ML. Tracking transcriptional activities with high-content epifluorescent imaging. Journal of Biomedical Optics. 17: 046008. PMID 22559686 DOI: 10.1117/1.Jbo.17.4.046008  0.546
2012 Knight JM, Datta A, Dougherty ER. Generating stochastic gene regulatory networks consistent with pathway information and steady-state behavior. Ieee Transactions On Bio-Medical Engineering. 59: 1701-10. PMID 22481804 DOI: 10.1109/Tbme.2012.2192117  0.335
2012 Sun Y, Zhang J, Braga-Neto U, Dougherty ER. BPDA2d--a 2D global optimization-based Bayesian peptide detection algorithm for liquid chromatograph-mass spectrometry. Bioinformatics (Oxford, England). 28: 564-72. PMID 22155863 DOI: 10.1093/Bioinformatics/Btr675  0.778
2012 Hsu FH, Serpedin E, Chen Y, Dougherty ER. Stochastic modeling of the relationship between copy number and gene expression based on transcriptional logic. Ieee Transactions On Bio-Medical Engineering. 59: 272-80. PMID 22042124 DOI: 10.1109/Tbme.2011.2173341  0.321
2012 Qian X, Dougherty ER. Intervention in gene regulatory networks via phenotypically constrained control policies based on long-run behavior. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 123-36. PMID 21788674 DOI: 10.1109/Tcbb.2011.107  0.383
2012 Hua J, Sima C, Cypert M, Gooden GC, Shack S, Alla L, Smith EA, Trent JM, Dougherty ER, Bittner ML. Dynamical analysis of drug efficacy and mechanism of action using gfp reporters Journal of Biological Systems. 20: 403-422. DOI: 10.1142/S0218339012400049  0.522
2012 Yousefi MR, Datta A, Dougherty ER. Optimal intervention strategies for therapeutic methods with fixed-length duration of drug effectiveness Ieee Transactions On Signal Processing. 60: 4930-4944. DOI: 10.1109/Tsp.2012.2202114  0.338
2012 Dalton LA, Dougherty ER. Exact sample conditioned MSE performance of the Bayesian MMSE estimator for classification error - Part II: Consistency and performance analysis Ieee Transactions On Signal Processing. 60: 2588-2603. DOI: 10.1109/Tsp.2012.2184102  0.688
2012 Dalton LA, Dougherty ER. Exact sample conditioned MSE performance of the Bayesian MMSE estimator for classification error - Part I: Representation Ieee Transactions On Signal Processing. 60: 2575-2587. DOI: 10.1109/Tsp.2012.2184101  0.695
2012 Dalton LA, Dougherty ER. Optimal classifiers within a Bayesian framework 2012 Ieee Statistical Signal Processing Workshop, Ssp 2012. 564-567. DOI: 10.1109/SSP.2012.6319760  0.614
2012 Dalton L, Dougherty ER. Optimal Bayesian classification and its application to gene regulatory networks Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 164-167. DOI: 10.1109/GENSIPS.2012.6507754  0.658
2012 Dalton LA, Dougherty ER. Optimal mean-square-error calibration of classifier error estimators under Bayesian models Pattern Recognition. 45: 2308-2320. DOI: 10.1016/J.Patcog.2011.12.003  0.688
2012 Zollanvari A, Braga-Neto U, Dougherty ER. Exact representation of the second-order moments for resubstitution and leave-one-out error estimation for linear discriminant analysis in the univariate heteroskedastic Gaussian model Pattern Recognition. 45: 908-917. DOI: 10.1016/J.Patcog.2011.08.006  0.708
2011 Dougherty ER, Zollanvari A, Braga-Neto UM. The illusion of distribution-free small-sample classification in genomics. Current Genomics. 12: 333-41. PMID 22294876 DOI: 10.2174/138920211796429763  0.705
2011 Esfahani MS, Yoon BJ, Dougherty ER. Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty. Bmc Bioinformatics. 12: S9. PMID 22166046 DOI: 10.1186/1471-2105-12-S10-S9  0.371
2011 Ghaffari N, Ivanov I, Qian X, Dougherty ER. A CoD-based stationary control policy for intervening in large gene regulatory networks. Bmc Bioinformatics. 12: S10. PMID 22165980 DOI: 10.1186/1471-2105-12-S10-S10  0.713
2011 Sima C, Braga-Neto UM, Dougherty ER. High-dimensional bolstered error estimation. Bioinformatics (Oxford, England). 27: 3056-64. PMID 21914630 DOI: 10.1093/Bioinformatics/Btr518  0.618
2011 Dalton LA, Dougherty ER. Application of the Bayesian MMSE estimator for classification error to gene expression microarray data. Bioinformatics (Oxford, England). 27: 1822-31. PMID 21551140 DOI: 10.1093/bioinformatics/btr272  0.673
2011 Yousefi MR, Hua J, Dougherty ER. Multiple-rule bias in the comparison of classification rules. Bioinformatics (Oxford, England). 27: 1675-83. PMID 21546390 DOI: 10.1093/Bioinformatics/Btr262  0.38
2011 Layek R, Datta A, Bittner M, Dougherty ER. Cancer therapy design based on pathway logic. Bioinformatics (Oxford, England). 27: 548-55. PMID 21193523 DOI: 10.1093/Bioinformatics/Btq703  0.659
2011 Dougherty ER. Validation of gene regulatory networks: scientific and inferential. Briefings in Bioinformatics. 12: 245-52. PMID 21183477 DOI: 10.1093/Bib/Bbq078  0.37
2011 Meskin N, Nounou HN, Nounou M, Datta A, Dougherty ER. Intervention in biological phenomena modeled by S-systems. Ieee Transactions On Bio-Medical Engineering. 58: 1260-7. PMID 21172748 DOI: 10.1109/Tbme.2010.2099658  0.317
2011 Layek RK, Datta A, Dougherty ER. From biological pathways to regulatory networks. Molecular Biosystems. 7: 843-51. PMID 21161088 DOI: 10.1039/C0Mb00263A  0.711
2011 Balagurunathan Y, Dougherty ER, Frančišković-Bilinski S, Bilinski H, Vdović N. MORPHOLOGICAL GRANULOMETRIC ANALYSIS OF SEDIMENT IMAGES Image Analysis & Stereology. 20: 87. DOI: 10.5566/Ias.V20.P87-99  0.589
2011 Zhao C, Ivanov I, Bittner ML, Dougherty ER. Pathway regulatory analysis in the context of bayesian networks using the coefficient of determination Journal of Biological Systems. 19: 651-682. DOI: 10.1142/S0218339011004123  0.357
2011 Zollanvari A, Braga-Neto UM, Dougherty ER. Analytic study of performance of error estimators for linear discriminant analysis Ieee Transactions On Signal Processing. 59: 4238-4255. DOI: 10.1109/Tsp.2011.2159210  0.705
2011 Dalton LA, Dougherty ER. Bayesian minimum mean-square error estimation for classification error - Part ii: Linear classification of gaussian models Ieee Transactions On Signal Processing. 59: 130-144. DOI: 10.1109/Tsp.2010.2084573  0.696
2011 Dalton LA, Dougherty ER. Bayesian minimum mean-square error estimation for classification error - Part i: Definition and the bayesian mmse error estimator for discrete classification Ieee Transactions On Signal Processing. 59: 115-129. DOI: 10.1109/Tsp.2010.2084572  0.695
2011 Zhang Z, Sun Y, Braga-Neto U, Dougherty E, Zhang J. A parallel programming framework with Markovian messaging for LC-MS peptide detection 2011 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2011. 1057-1059. DOI: 10.1109/BIBMW.2011.6112559  0.764
2011 Dalton L, Dougherty ER. Exact MSE performance of the Bayesian MMSE estimator for classification error Conference Record - Asilomar Conference On Signals, Systems and Computers. 997-1001. DOI: 10.1109/ACSSC.2011.6190161  0.645
2011 Dalton L, Dougherty ER. Classifier error estimator performance in a bayesian context Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 135-138.  0.643
2011 Esfahani MS, Zollanvari A, Yoon BJ, Dougherty ER. Designing enhanced classifiers using prior process knowledge: Regularized maximum-likelihood Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 91-94.  0.624
2011 Atashpaz-Gargari E, Sima C, Braga-Neto UM, Dougherty ER. Relationship between the accuracy of classifier error estimation and distribution complexity Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 147-149.  0.523
2010 Qian X, Ghaffari N, Ivanov I, Dougherty ER. State reduction for network intervention in probabilistic Boolean networks. Bioinformatics (Oxford, England). 26: 3098-104. PMID 20956246 DOI: 10.1093/Bioinformatics/Btq575  0.713
2010 Su J, Yoon BJ, Dougherty ER. Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network. Bmc Bioinformatics. 11: S8. PMID 20946619 DOI: 10.1186/1471-2105-11-S6-S8  0.363
2010 Sun Y, Zhang J, Braga-Neto U, Dougherty ER. BPDA - a Bayesian peptide detection algorithm for mass spectrometry. Bmc Bioinformatics. 11: 490. PMID 20920238 DOI: 10.1186/1471-2105-11-490  0.779
2010 Zhao C, Bittner ML, Chapkin RS, Dougherty ER. Characterization of the effectiveness of reporting lists of small feature sets relative to the accuracy of the prior biological knowledge. Cancer Informatics. 9: 49-60. PMID 20458361 DOI: 10.4137/Cin.S4020  0.369
2010 Ghaffari N, Ivanov I, Qian X, Dougherty ER. A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinformatics (Oxford, England). 26: 1556-63. PMID 20421196 DOI: 10.1093/Bioinformatics/Btq225  0.71
2010 Wang H, Qian L, Dougherty E. Inference of gene regulatory networks using S-system: a unified approach. Iet Systems Biology. 4: 145-56. PMID 20232994 DOI: 10.1049/Iet-Syb.2008.0175  0.379
2010 Hanczar B, Hua J, Sima C, Weinstein J, Bittner M, Dougherty ER. Small-sample precision of ROC-related estimates. Bioinformatics (Oxford, England). 26: 822-30. PMID 20130029 DOI: 10.1093/Bioinformatics/Btq037  0.593
2010 Yousefi MR, Hua J, Sima C, Dougherty ER. Reporting bias when using real data sets to analyze classification performance. Bioinformatics (Oxford, England). 26: 68-76. PMID 19846436 DOI: 10.1093/Bioinformatics/Btp605  0.592
2010 Dougherty ER, Sima C, Hua J, Hanczar B, Braga-Neto UM. Performance of error estimators for classification Current Bioinformatics. 5: 53-67. DOI: 10.2174/157489310790596385  0.606
2010 Hanczar B, Dougherty E. On the Comparison of Classifiers for Microarray Data Current Bioinformatics. 5: 29-39. DOI: 10.2174/157489310790596376  0.404
2010 Ivanov I, Simeonov P, Ghaffari N, Qian X, Dougherty ER. Selection policy-induced reduction mappings for Boolean networks Ieee Transactions On Signal Processing. 58: 4871-4882. DOI: 10.1109/Tsp.2010.2050314  0.691
2010 Zollanvari A, Braga-Neto UM, Dougherty ER. Joint sampling distribution between actual and estimated classification errors for linear discriminant analysis Ieee Transactions On Information Theory. 56: 784-804. DOI: 10.1109/Tit.2009.2037034  0.711
2010 Zollanvari A, Braga-Neto UM, Dougherty ER. RMS bounds and sample size considerations for error estimation in linear discriminant analysis 2010 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2010. DOI: 10.1109/GENSIPS.2010.5719691  0.659
2010 Yousefi MR, Hua J, Sima C, Dougherty ER. Effects of partial reporting of classification results 2010 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2010. DOI: 10.1109/GENSIPS.2010.5719688  0.458
2010 Dalton LA, Dougherty ER. Bayesian MMSE estimation of classification error and performance on real genomic data 2010 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2010. DOI: 10.1109/GENSIPS.2010.5719674  0.639
2010 Dougherty ER, Pal R, Qian X, Bittner ML, Datta A. Stationary and structural control in gene regulatory networks: Basic concepts International Journal of Systems Science. 41: 5-16. DOI: 10.1080/00207720903144560  0.377
2010 Braga-Neto UM, Dougherty ER. Exact correlation between actual and estimated errors in discrete classification Pattern Recognition Letters. 31: 407-412. DOI: 10.1016/J.Patrec.2009.10.017  0.382
2009 Faryabi B, Vahedi G, Datta A, Chamberland JF, Dougherty ER. Recent advances in intervention in markovian regulatory networks. Current Genomics. 10: 463-77. PMID 20436874 DOI: 10.2174/138920209789208246  0.795
2009 Sun Y, Braga-Neto U, Dougherty ER. Impact of missing value imputation on classification for DNA microarray gene expression data--a model-based study. Eurasip Journal On Bioinformatics & Systems Biology. 2009: 504069. PMID 20224634 DOI: 10.1155/2009/504069  0.799
2009 Dougherty ER, Hua J, Sima C. Performance of feature selection methods. Current Genomics. 10: 365-74. PMID 20190952 DOI: 10.2174/138920209789177629  0.571
2009 Dougherty ER, Huang Y, Kim S, Cai X, Yamaguchi R. Genomic signal processing. Current Genomics. 10: 364. PMID 20190951 DOI: 10.2174/138920209789177593  0.579
2009 Su J, Yoon BJ, Dougherty ER. Accurate and reliable cancer classification based on probabilistic inference of pathway activity. Plos One. 4: e8161. PMID 19997592 DOI: 10.1371/Journal.Pone.0008161  0.359
2009 Zollanvari A, Cunningham MJ, Braga-Neto U, Dougherty ER. Analysis and modeling of time-course gene-expression profiles from nanomaterial-exposed primary human epidermal keratinocytes. Bmc Bioinformatics. 10: S10. PMID 19811675 DOI: 10.1186/1471-2105-10-S11-S10  0.66
2009 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Sampling-rate-dependent probabilistic Boolean networks. Journal of Theoretical Biology. 261: 540-7. PMID 19716832 DOI: 10.1016/J.Jtbi.2009.08.026  0.798
2009 Qian X, Ivanov I, Ghaffari N, Dougherty ER. Intervention in gene regulatory networks via greedy control policies based on long-run behavior. Bmc Systems Biology. 3: 61. PMID 19527511 DOI: 10.1186/1752-0509-3-61  0.705
2009 Layek R, Datta A, Pal R, Dougherty ER. Adaptive intervention in probabilistic boolean networks. Bioinformatics (Oxford, England). 25: 2042-8. PMID 19505946 DOI: 10.1093/Bioinformatics/Btp349  0.725
2009 Zhao C, Ivanov I, Dougherty ER, Hartman TJ, Lanza E, Bobe G, Colburn NH, Lupton JR, Davidson LA, Chapkin RS. Noninvasive detection of candidate molecular biomarkers in subjects with a history of insulin resistance and colorectal adenomas. Cancer Prevention Research (Philadelphia, Pa.). 2: 590-7. PMID 19470793 DOI: 10.1158/1940-6207.Capr-08-0233  0.311
2009 Vahedi G, Ivanov IV, Dougherty ER. Inference of Boolean networks under constraint on bidirectional gene relationships. Iet Systems Biology. 3: 191-202. PMID 19449979 DOI: 10.1049/Iet-Syb.2007.0070  0.667
2009 Dougherty ER, Brun M, Trent JM, Bittner ML. Conditioning-based modeling of contextual genomic regulation. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 6: 310-20. PMID 19407354 DOI: 10.1109/Tcbb.2007.70247  0.345
2009 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Intervention in context-sensitive probabilistic Boolean networks revisited. Eurasip Journal On Bioinformatics & Systems Biology. 360864. PMID 19404383 DOI: 10.1155/2009/360864  0.803
2009 Zhao W, Serpedin E, Dougherty ER. Identifying genes involved in cyclic processes by combining gene expression analysis and prior knowledge. Eurasip Journal On Bioinformatics & Systems Biology. 683463. PMID 19390635 DOI: 10.1155/2009/683463  0.583
2009 Zhao W, Serpedin E, Dougherty ER. Spectral preprocessing for clustering time-series gene expressions. Eurasip Journal On Bioinformatics & Systems Biology. 713248. PMID 19381338 DOI: 10.1155/2009/713248  0.554
2009 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Optimal intervention strategies for cyclic therapeutic methods. Ieee Transactions On Bio-Medical Engineering. 56: 281-91. PMID 19272947 DOI: 10.1109/Tbme.2008.2003092  0.792
2009 Qian X, Dougherty ER. On the long-run sensitivity of probabilistic Boolean networks. Journal of Theoretical Biology. 257: 560-77. PMID 19168076 DOI: 10.1016/J.Jtbi.2008.12.023  0.366
2009 Pal R, Datta A, Dougherty E. Bayesian Robustness in the Control of Gene Regulatory Networks Ieee Transactions On Signal Processing. 57: 3667-3678. DOI: 10.1109/Tsp.2009.2022872  0.435
2009 Ghaffari N, Ivanov I, Dougherty E. A cod based reduction algorithm for boolean and probabilistic boolean networks 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174350  0.655
2009 Sima C, Vu T, Braga-Neto UM, Dougherty ER. Bolstered error estimator with feature selection 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174343  0.517
2009 Vahedi G, Shmulevich I, Liu W, Dougherty E. Critical boolean networks require minimal intervention rate 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174341  0.588
2009 Zollanvari A, Braga-Neto UM, Dougherty ER. Sample size calculation from specified RMS of the resubstitution error for linear classifiers 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174333  0.641
2009 Faryabi B, Vahedil G, Chamberland JF, Datta A, Dougherty ER. Open-loop feedback intervention: Control of gene regulatory networks with unmeasurable context 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174326  0.766
2009 Zollanvari A, Braga-Neto UM, Dougherty ER. On the sampling distribution of resubstitution and leave-one-out error estimators for linear classifiers Pattern Recognition. 42: 2705-2723. DOI: 10.1016/J.Patcog.2009.05.003  0.705
2009 Hua J, Tembe WD, Dougherty ER. Performance of feature-selection methods in the classification of high-dimension data Pattern Recognition. 42: 409-424. DOI: 10.1016/J.Patcog.2008.08.001  0.356
2009 Xu Q, Hua J, Xiong Z, Bittner ML, Dougherty ER. The effect of microarray image compression on expression-based classification Signal, Image and Video Processing. 3: 53-61. DOI: 10.1007/S11760-008-0059-2  0.301
2008 Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER. Intervention in gene regulatory networks via a stationary mean-first-passage-time control policy. Ieee Transactions On Bio-Medical Engineering. 55: 2319-31. PMID 18838357 DOI: 10.1109/Tbme.2008.925677  0.802
2008 Hanczar B, Dougherty ER. Classification with reject option in gene expression data. Bioinformatics (Oxford, England). 24: 1889-95. PMID 18621758 DOI: 10.1093/Bioinformatics/Btn349  0.364
2008 Liu W, Lähdesmäki H, Dougherty ER, Shmulevich I. Inference of Boolean networks using sensitivity regularization. Eurasip Journal On Bioinformatics & Systems Biology. 780541. PMID 18604289 DOI: 10.1155/2008/780541  0.382
2008 Zhao W, Agyepong K, Serpedin E, Dougherty ER. Detecting periodic genes from irregularly sampled gene expressions: a comparison study. Eurasip Journal On Bioinformatics & Systems Biology. 769293. PMID 18584052 DOI: 10.1155/2008/769293  0.575
2008 Zhao W, Serpedin E, Dougherty ER. Recovering genetic regulatory networks from chromatin immunoprecipitation and steady-state microarray data. Eurasip Journal On Bioinformatics & Systems Biology. 248747. PMID 18584039 DOI: 10.1155/2008/248747  0.617
2008 Faryabi B, Vahedi G, Chamberland JF, Datta A, Dougherty ER. Optimal constrained stationary intervention in gene regulatory networks. Eurasip Journal On Bioinformatics & Systems Biology. 620767. PMID 18516276 DOI: 10.1155/2008/620767  0.801
2008 Brun M, Xu Q, Dougherty ER. Which is better: holdout or full-sample classifier design? Eurasip Journal On Bioinformatics & Systems Biology. 297945. PMID 18483613 DOI: 10.1155/2008/297945  0.364
2008 Zhao W, Serpedin E, Dougherty ER. Inferring connectivity of genetic regulatory networks using information-theoretic criteria. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 5: 262-74. PMID 18451435 DOI: 10.1109/Tcbb.2007.1067  0.598
2008 Choudhary A, Hua J, Bittner ML, Dougherty ER. The effect of population contexts on classifier performance Journal of Biological Systems. 16: 495-517. DOI: 10.1142/S0218339008002587  0.331
2008 Qian X, Dougherty ER. Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention Ieee Transactions On Signal Processing. 56: 4966-4976. DOI: 10.1109/Tsp.2008.928089  0.382
2008 Qian L, Wang H, Dougherty ER. Inference of Noisy Nonlinear Differential Equation Models for Gene Regulatory Networks Using Genetic Programming and Kalman Filtering Ieee Transactions On Signal Processing. 56: 3327-3339. DOI: 10.1109/Tsp.2008.919638  0.365
2008 Faryabi B, Chamberland JF, Vahedi G, Datta A, Dougherty ER. Optimal intervention in asynchronous genetic regulatory networks Ieee Journal On Selected Topics in Signal Processing. 2: 412-423. DOI: 10.1109/Jstsp.2008.923853  0.805
2008 Martins DC, Braga-Neto UM, Hashimoto RF, Bittner ML, Dougherty ER. Intrinsically multivariate predictive genes Ieee Journal On Selected Topics in Signal Processing. 2: 424-439. DOI: 10.1109/Jstsp.2008.923841  0.307
2008 Sima C, Dougherty ER. The peaking phenomenon in the presence of feature-selection Pattern Recognition Letters. 29: 1667-1674. DOI: 10.1016/J.Patrec.2008.04.010  0.572
2007 Dougherty ER. Validation of inference procedures for gene regulatory networks. Current Genomics. 8: 351-9. PMID 19412435 DOI: 10.2174/138920207783406505  0.395
2007 Marshall S, Yu L, Xiao Y, Dougherty ER. Inference of a probabilistic Boolean network from a single observed temporal sequence. Eurasip Journal On Bioinformatics & Systems Biology. 32454. PMID 18364987 DOI: 10.1155/2007/32454  0.544
2007 Brun M, Kim S, Choi W, Dougherty ER. Comparison of gene regulatory networks via steady-state trajectories. Eurasip Journal On Bioinformatics & Systems Biology. 82702. PMID 18309365 DOI: 10.1155/2007/82702  0.61
2007 Hanczar B, Hua J, Dougherty ER. Decorrelation of the true and estimated classifier errors in high-dimensional settings. Eurasip Journal On Bioinformatics & Systems Biology. 38473. PMID 18288255 DOI: 10.1155/2007/38473  0.385
2007 Faryabi B, Datta A, Dougherty ER. On approximate stochastic control in genetic regulatory networks. Iet Systems Biology. 1: 361-8. PMID 18203582 DOI: 10.1049/Iet-Syb:20070015  0.799
2007 Xiao Y, Hua J, Dougherty ER. Quantification of the impact of feature selection on the variance of cross-validation error estimation. Eurasip Journal On Bioinformatics & Systems Biology. 16354. PMID 17713587 DOI: 10.1155/2007/16354  0.552
2007 Johnson CD, Balagurunathan Y, Dougherty ER, Afshari CA, He Q, Ramos KS. Insight into redox-regulated gene networks in vascular cells. Bioinformation. 1: 379-83. PMID 17597926 DOI: 10.6026/97320630001379  0.598
2007 Xiao Y, Dougherty ER. The impact of function perturbations in Boolean networks. Bioinformatics (Oxford, England). 23: 1265-73. PMID 17379691 DOI: 10.1093/Bioinformatics/Btm093  0.533
2007 Ivanov I, Pal R, Dougherty ER. Dynamics Preserving Size Reduction Mappings for Probabilistic Boolean Networks Ieee Transactions On Signal Processing. 55: 2310-2322. DOI: 10.1109/Tsp.2006.890929  0.383
2007 Faryabi B, Datta A, Dougherty ER. On reinforcement learning in genetic regulatory networks Ieee Workshop On Statistical Signal Processing Proceedings. 11-15. DOI: 10.1109/SSP.2007.4301208  0.746
2007 Vahedi G, Datta A, Dougherty ER. Which control gene should be used in genetic regulatory networks? Ieee Workshop On Statistical Signal Processing Proceedings. 6-10. DOI: 10.1109/SSP.2007.4301207  0.598
2007 Datta A, Pal R, Choudhary A, Dougherty E. Control approaches for probabilistic gene regulatory networks - What approaches have been developed for addreassinig the issue of intervention? Ieee Signal Processing Magazine. 24: 54-63. DOI: 10.1109/Msp.2007.273057  0.385
2007 Brun M, Sima C, Hua J, Lowey J, Carroll B, Suh E, Dougherty ER. Model-based evaluation of clustering validation measures Pattern Recognition. 40: 807-824. DOI: 10.1016/J.Patcog.2006.06.026  0.563
2006 Dougherty ER, Brun M. On the number of close-to-optimal feature sets. Cancer Informatics. 2: 189-96. PMID 19458767 DOI: 10.4137/Cin.S0  0.362
2006 Hua J, Balagurunathan Y, Chen Y, Lowey J, Bittner ML, Xiong Z, Suh E, Dougherty ER. Normalization benefits microarray-based classification. Eurasip Journal On Bioinformatics & Systems Biology. 43056. PMID 18427588 DOI: 10.1155/Bsb/2006/43056  0.651
2006 Xu Q, Hua J, Braga-Neto U, Xiong Z, Suh E, Dougherty ER. Confidence intervals for the true classification error conditioned on the estimated error. Technology in Cancer Research & Treatment. 5: 579-89. PMID 17121434 DOI: 10.1177/153303460600500605  0.352
2006 Sima C, Dougherty ER. What should be expected from feature selection in small-sample settings. Bioinformatics (Oxford, England). 22: 2430-6. PMID 16870934 DOI: 10.1093/Bioinformatics/Btl407  0.58
2006 Zhao W, Serpedin E, Dougherty ER. Inferring gene regulatory networks from time series data using the minimum description length principle. Bioinformatics (Oxford, England). 22: 2129-35. PMID 16845143 DOI: 10.1093/Bioinformatics/Btl364  0.617
2006 Hua J, Lowey J, Xiong Z, Dougherty ER. Noise-injected neural networks show promise for use on small-sample expression data. Bmc Bioinformatics. 7: 274. PMID 16737545 DOI: 10.1186/1471-2105-7-274  0.366
2006 Choudhary A, Brun M, Hua J, Lowey J, Suh E, Dougherty ER. Genetic test bed for feature selection. Bioinformatics (Oxford, England). 22: 837-42. PMID 16428263 DOI: 10.1093/Bioinformatics/Btl008  0.38
2006 Choudhary A, Datta A, Bittner ML, Dougherty ER. Intervention in a family of Boolean networks. Bioinformatics (Oxford, England). 22: 226-32. PMID 16286362 DOI: 10.1093/Bioinformatics/Bti765  0.383
2006 Datta A, Pal R, Dougherty E. Intervention in Probabilistic Gene Regulatory Networks Current Bioinformatics. 1: 167-184. DOI: 10.2174/157489306777011978  0.383
2006 IVANOV I, DOUGHERTY ER. MODELING GENETIC REGULATORY NETWORKS: CONTINUOUS OR DISCRETE? Journal of Biological Systems. 14: 219-229. DOI: 10.1142/S0218339006001763  0.344
2006 DOUGHERTY ER, BRAGA-NETO U. EPISTEMOLOGY OF COMPUTATIONAL BIOLOGY: MATHEMATICAL MODELS AND EXPERIMENTAL PREDICTION AS THE BASIS OF THEIR VALIDITY Journal of Biological Systems. 14: 65-90. DOI: 10.1142/S0218339006001726  0.318
2006 Dougherty ER, Xiao Y. Design of probabilistic Boolean networks under the requirement of contextual data consistency Ieee Transactions On Signal Processing. 54: 3603-3613. DOI: 10.1109/Tsp.2006.877641  0.565
2006 Pal R, Datta A, Dougherty E. Optimal infinite-horizon control for probabilistic Boolean networks Ieee Transactions On Signal Processing. 54: 2375-2387. DOI: 10.1109/Tsp.2006.873740  0.366
2006 Xiao Y, Dougherty ER. Optimizing Consistency-Based Design of Context-Sensitive Gene Regulatory Networks Ieee Transactions On Circuits and Systems I: Regular Papers. 53: 2431-2437. DOI: 10.1109/Tcsi.2006.883883  0.585
2006 Sima C, Dougherty ER. Optimal convex error estimators for classification Pattern Recognition. 39: 1763-1780. DOI: 10.1016/J.Patcog.2006.03.020  0.609
2006 Suh EB, Dougherty ER, Kim S, Bittner ML, Chen Y, Russ DE, Martino RL. Parallel computation and visualization tools for codetermination analysis of multivariate gene expression relations Computational and Statistical Approaches to Genomics. 297-310. DOI: 10.1007/0-387-26288-1_15  0.487
2005 Pal R, Ivanov I, Datta A, Bittner ML, Dougherty ER. Generating Boolean networks with a prescribed attractor structure. Bioinformatics (Oxford, England). 21: 4021-5. PMID 16150807 DOI: 10.1093/Bioinformatics/Bti664  0.367
2005 Pal R, Datta A, Fornace AJ, Bittner ML, Dougherty ER. Boolean relationships among genes responsive to ionizing radiation in the NCI 60 ACDS Bioinformatics. 21: 1542-1549. PMID 15598836 DOI: 10.1093/Bioinformatics/Bti214  0.304
2005 Hua J, Xiong Z, Lowey J, Suh E, Dougherty ER. Optimal number of features as a function of sample size for various classification rules. Bioinformatics (Oxford, England). 21: 1509-15. PMID 15572470 DOI: 10.1093/Bioinformatics/Bti171  0.386
2005 Pal R, Datta A, Bittner ML, Dougherty ER. Intervention in context-sensitive probabilistic Boolean networks. Bioinformatics (Oxford, England). 21: 1211-8. PMID 15531600 DOI: 10.1093/Bioinformatics/Bti131  0.411
2005 Sima C, Braga-Neto U, Dougherty ER. Superior feature-set ranking for small samples using bolstered error estimation. Bioinformatics (Oxford, England). 21: 1046-54. PMID 15514003 DOI: 10.1093/Bioinformatics/Bti081  0.606
2005 Fu WJ, Dougherty ER, Mallick B, Carroll RJ. How many samples are needed to build a classifier: a general sequential approach. Bioinformatics (Oxford, England). 21: 63-70. PMID 15297303 DOI: 10.1093/Bioinformatics/Bth461  0.311
2005 ZHOU X, WANG X, DOUGHERTY ER. GENE SELECTION USING LOGISTIC REGRESSIONS BASED ON AIC, BIC AND MDL CRITERIA New Mathematics and Natural Computation. 1: 129-145. DOI: 10.1142/S179300570500007X  0.356
2005 Dougherty ER, Datta A, Sima C. Research issues in genomic signal processing Ieee Signal Processing Magazine. 22: 46-68. DOI: 10.1109/Msp.2005.1550189  0.504
2005 Dougherty E, Datta A. Genomic signal processing: diagnosis and therapy Ieee Signal Processing Magazine. 22: 107-112. DOI: 10.1109/Msp.2005.1407722  0.328
2005 Liu H, Dougherty E, Dy J, Torkkola K, Tuv E, Peng H, Ding C, Long F, Berens M, Parsons L, Yu L, Zhao Z, Forman G. Evolving feature selection Ieee Intelligent Systems. 20: 64-76. DOI: 10.1109/Mis.2005.105  0.303
2005 Brun M, Dougherty ER, Shmulevich I. Steady-state probabilities for attractors in probabilistic Boolean networks Signal Processing. 85: 1993-2013. DOI: 10.1016/J.Sigpro.2005.02.016  0.346
2005 Silva PJS, Hashimoto RF, Kim S, Barrera J, Brandão LO, Suh E, Dougherty ER. Feature selection algorithms to find strong genes Pattern Recognition Letters. 26: 1444-1453. DOI: 10.1016/J.Patrec.2004.11.017  0.609
2005 Sima C, Attoor S, Brag-Neto U, Lowey J, Suh E, Dougherty ER. Impact of error estimation on feature selection Pattern Recognition. 38: 2472-2482. DOI: 10.1016/J.Patcog.2005.03.026  0.599
2005 Braga-Neto U, Dougherty E. Exact performance of error estimators for discrete classifiers Pattern Recognition. 38: 1799-1814. DOI: 10.1016/J.Patcog.2005.02.013  0.395
2005 Dougherty ER, Hua J, Xiong Z, Chen Y. Optimal robust classifiers Pattern Recognition. 38: 1520-1532. DOI: 10.1016/J.Patcog.2005.01.019  0.379
2005 Hsing T, Liu LY, Brun M, Dougherty ER. The coefficient of intrinsic dependence (feature selection using el CID) Pattern Recognition. 38: 623-636. DOI: 10.1016/J.Patcog.2004.09.002  0.329
2005 Hua J, Xiong Z, Dougherty ER. Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution Pattern Recognition. 38: 403-421. DOI: 10.1016/J.Patcog.2004.08.007  0.405
2004 Attoor S, Dougherty ER, Chen Y, Bittner ML, Trent JM. Which is better for cDNA-microarray-based classification: ratios or direct intensities. Bioinformatics (Oxford, England). 20: 2513-20. PMID 15454406 DOI: 10.1093/Bioinformatics/Bth272  0.325
2004 Balagurunathan Y, Wang N, Dougherty ER, Nguyen D, Chen Y, Bittner ML, Trent J, Carroll R. Noise factor analysis for cDNA microarrays. Journal of Biomedical Optics. 9: 663-78. PMID 15250753 DOI: 10.1117/1.1755232  0.588
2004 Zhou X, Wang X, Pal R, Ivanov I, Bittner M, Dougherty ER. A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks. Bioinformatics (Oxford, England). 20: 2918-27. PMID 15145802 DOI: 10.1093/Bioinformatics/Bth318  0.413
2004 Zhou X, Wang X, Dougherty ER, Russ D, Suh E. Gene clustering based on clusterwide mutual information. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 147-61. PMID 15072693 DOI: 10.1089/106652704773416939  0.337
2004 Johnson CD, Balagurunathan Y, Tadesse MG, Falahatpisheh MH, Brun M, Walker MK, Dougherty ER, Ramos KS. Unraveling gene-gene interactions regulated by ligands of the aryl hydrocarbon receptor. Environmental Health Perspectives. 112: 403-12. PMID 15033587 DOI: 10.1289/Ehp.6758  0.609
2004 Braga-Neto UM, Dougherty ER. Is cross-validation valid for small-sample microarray classification? Bioinformatics (Oxford, England). 20: 374-80. PMID 14960464 DOI: 10.1093/Bioinformatics/Btg419  0.382
2004 Hashimoto RF, Kim S, Shmulevich I, Zhang W, Bittner ML, Dougherty ER. Growing genetic regulatory networks from seed genes. Bioinformatics (Oxford, England). 20: 1241-7. PMID 14871865 DOI: 10.1093/Bioinformatics/Bth074  0.61
2004 Datta A, Choudhary A, Bittner ML, Dougherty ER. External control in Markovian genetic regulatory networks: the imperfect information case. Bioinformatics (Oxford, England). 20: 924-30. PMID 14751971 DOI: 10.1093/Bioinformatics/Bth008  0.367
2004 Braga-Neto U, Hashimoto R, Dougherty ER, Nguyen DV, Carroll RJ. Is cross-validation better than resubstitution for ranking genes? Bioinformatics (Oxford, England). 20: 253-8. PMID 14734317 DOI: 10.1093/Bioinformatics/Btg399  0.426
2004 Dougherty ER, Shmulevich I, Bittner ML. Genomic Signal Processing: The Salient Issues Eurasip Journal On Advances in Signal Processing. 2004. DOI: 10.1155/S1110865704310097  0.362
2004 Ivanov I, Dougherty ER. Reduction Mappings between Probabilistic Boolean Networks Eurasip Journal On Advances in Signal Processing. 2004. DOI: 10.1155/S1110865704309182  0.335
2004 Zhou X, Wang X, Dougherty ER. Gene Prediction Using Multinomial Probit Regression with Bayesian Gene Selection Eurasip Journal On Advances in Signal Processing. 2004. DOI: 10.1155/S1110865704309157  0.39
2004 ZHOU X, WANG X, DOUGHERTY ER. NONLINEAR PROBIT GENE CLASSIFICATION USING MUTUAL INFORMATION AND WAVELET-BASED FEATURE SELECTION Journal of Biological Systems. 12: 371-386. DOI: 10.1142/S0218339004001178  0.339
2004 Brun M, Hirata Jr. R, Barrera J, Dougherty ER. Nonlinear Filter Design Using Envelopes Journal of Mathematical Imaging and Vision. 21: 81-97. DOI: 10.1023/B:Jmiv.0000026558.10581.E6  0.302
2004 Attoor SN, Dougherty ER. Classifier performance as a function of distributional complexity Pattern Recognition. 37: 1641-1651. DOI: 10.1016/J.Patcog.2003.10.013  0.33
2004 Dougherty ER, Brun M. A probabilistic theory of clustering Pattern Recognition. 37: 917-925. DOI: 10.1016/J.Patcog.2003.10.003  0.321
2004 Braga-Neto U, Dougherty E. Bolstered error estimation Pattern Recognition. 37: 1267-1281. DOI: 10.1016/J.Patcog.2003.08.017  0.386
2003 Shmulevich I, Gluhovsky I, Hashimoto RF, Dougherty ER, Zhang W. Steady-state analysis of genetic regulatory networks modelled by probabilistic boolean networks. Comparative and Functional Genomics. 4: 601-8. PMID 18629023 DOI: 10.1002/Cfg.342  0.393
2003 Shmulevich I, Lähdesmäki H, Dougherty ER, Astola J, Zhang W. The role of certain Post classes in Boolean network models of genetic networks. Proceedings of the National Academy of Sciences of the United States of America. 100: 10734-9. PMID 12963822 DOI: 10.1073/Pnas.1534782100  0.35
2003 Morikawa J, Li H, Kim S, Nishi K, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W, Kobayashi T. Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARalpha). International Journal of Oncology. 23: 617-25. PMID 12888896  0.485
2003 Brun M, Sabbagh DL, Kim S, Dougherty ER. Corrected small-sample estimation of the Bayes error. Bioinformatics (Oxford, England). 19: 944-51. PMID 12761056 DOI: 10.1093/Bioinformatics/Btg144  0.636
2003 Johnson CD, Balagurunathan Y, Lu KP, Tadesse M, Falahatpisheh MH, Carroll RJ, Dougherty ER, Afshari CA, Ramos KS. Genomic profiles and predictive biological networks in oxidant-induced atherogenesis. Physiological Genomics. 13: 263-75. PMID 12657712 DOI: 10.1152/Physiolgenomics.00006.2003  0.612
2003 Kobayashi T, Yamaguchi M, Kim S, Morikawa J, Ogawa S, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W. Microarray reveals differences in both tumors and vascular specific gene expression in de novo CD5+ and CD5- diffuse large B-cell lymphomas. Cancer Research. 63: 60-6. PMID 12517778  0.463
2003 Lee KE, Sha N, Dougherty ER, Vannucci M, Mallick BK. Gene selection: a Bayesian variable selection approach. Bioinformatics (Oxford, England). 19: 90-7. PMID 12499298 DOI: 10.1093/Bioinformatics/19.1.90  0.369
2003 Morikawa J, Li H, Kim S, Nishi K, Ueno S, Suh E, Dougherty E, Shmulevich I, Shiku H, Zhang W, Kobayashi T. Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARα) International Journal of Oncology. 23: 617-625. DOI: 10.3892/Ijo.23.3.617  0.537
2003 McKENZIE J, MARSHALL S, GRAY AJ, DOUGHERTY ER. MORPHOLOGICAL TEXTURE ANALYSIS USING THE TEXTURE EVOLUTION FUNCTION International Journal of Pattern Recognition and Artificial Intelligence. 17: 167-185. DOI: 10.1142/S0218001403002290  0.342
2003 Balagurunathan Y, Dougherty ER. Morphological quantification of surface roughness Optical Engineering. 42: 1795-1804. DOI: 10.1117/1.1570825  0.618
2003 Hsing T, Attoor S, Dougherty E. Relation between permutation-test P values and classifier error estimates Machine Learning. 52: 11-30. DOI: 10.1023/A:1023985022691  0.366
2003 Franciskovic-Bilinski S, Bilinski H, Vdović N, Balagurunathan Y, Dougherty ER. Application of image-based granulometry to siliceous and calcareous estuarine and marine sediments Estuarine, Coastal and Shelf Science. 58: 227-239. DOI: 10.1016/S0272-7714(03)00074-X  0.578
2003 Balagurunathan Y, Dougherty ER. Granulometric parametric estimation for the random Boolean model using optimal linear filters and optimal structuring elements Pattern Recognition Letters. 24: 283-293. DOI: 10.1016/S0167-8655(02)00242-8  0.642
2003 Zhou X, Wang X, Dougherty ER. Construction of genomic networks using mutual-information clustering and reversible-jump Markov-chain-Monte-Carlo predictor design Signal Processing. 83: 745-761. DOI: 10.1016/S0165-1684(02)00469-3  0.385
2003 Hashimoto RF, Dougherty ER, Brun M, Zhou ZZ, Bittner ML, Trent JM. Efficient selection of feature sets possessing high coefficients of determination based on incremental determinations Signal Processing. 83: 695-712. DOI: 10.1016/S0165-1684(02)00468-1  0.326
2002 Kim S, Dougherty ER, Shmulevich I, Hess KR, Hamilton SR, Trent JM, Fuller GN, Zhang W. Identification of combination gene sets for glioma classification. Molecular Cancer Therapeutics. 1: 1229-36. PMID 12479704  0.554
2002 Shmulevich I, Dougherty ER, Zhang W. Gene perturbation and intervention in probabilistic Boolean networks. Bioinformatics (Oxford, England). 18: 1319-31. PMID 12376376 DOI: 10.1093/Bioinformatics/18.10.1319  0.402
2002 Balagurunathan Y, Dougherty ER, Chen Y, Bittner ML, Trent JM. Simulation of cDNA microarrays via a parameterized random signal model. Journal of Biomedical Optics. 7: 507-23. PMID 12175304 DOI: 10.1117/1.1486246  0.606
2002 Kim S, Dougherty ER, Barrera J, Chen Y, Bittner ML, Trent JM. Strong feature sets from small samples. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 127-46. PMID 11911798 DOI: 10.1089/10665270252833226  0.629
2002 Dougherty ER, Barrera J, Brun M, Kim S, Cesar RM, Chen Y, Bittner M, Trent JM. Inference from clustering with application to gene-expression microarrays. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 105-26. PMID 11911797 DOI: 10.1089/10665270252833217  0.572
2002 Shmulevich I, Dougherty ER, Kim S, Zhang W. Probabilistic Boolean Networks: a rule-based uncertainty model for gene regulatory networks. Bioinformatics (Oxford, England). 18: 261-74. PMID 11847074 DOI: 10.1093/Bioinformatics/18.2.261  0.62
2002 SHMULEVICH I, DOUGHERTY ER, ZHANG W. CONTROL OF STATIONARY BEHAVIOR IN PROBABILISTIC BOOLEAN NETWORKS BY MEANS OF STRUCTURAL INTERVENTION Journal of Biological Systems. 10: 431-445. DOI: 10.1142/S0218339002000706  0.362
2002 Kim S, Li H, Dougherty ER, Cao N, Chen Y, Bittner M, Suh EB. Can Markov chain models mimic biological regulation? Journal of Biological Systems. 10: 337-357. DOI: 10.1142/S0218339002000676  0.585
2002 Brun M, Balagurunathan Y, Barrera J, Dougherty ER. Clustering granulometric features Proceedings of Spie - the International Society For Optical Engineering. 4667: 36-42. DOI: 10.1117/12.468006  0.626
2002 Grigoryan AM, Dougherty ER. Automatic counting of illuminated spheres in a random Boolean model Proceedings of Spie - the International Society For Optical Engineering. 4667: 170-180. DOI: 10.1117/12.467979  0.322
2002 Balagurunathan Y, Hashimoto RF, Kim S, Barrera J, Dougherty ER. Granulometric classifiers from small samples Proceedings of Spie - the International Society For Optical Engineering. 4667: 100-107. DOI: 10.1117/12.467971  0.713
2002 Dougherty ER. Journal of Mathematical Imaging and Vision. 17: 271-281. DOI: 10.1023/A:1020767610609  0.319
2002 Hirata Junior R, Brun M, Barrera J, Dougherty ER. Journal of Mathematical Imaging and Vision. 16: 199-222. DOI: 10.1023/A:1020377610141  0.315
2002 Dougherty ER, Barrera J. Journal of Mathematical Imaging and Vision. 16: 181-197. DOI: 10.1023/A:1020325626071  0.335
2002 Balagurunathan Y, Dougherty ER. Optimal linear granulometric estimation for random sets Pattern Recognition. 35: 1315-1325. DOI: 10.1016/S0031-3203(01)00113-3  0.646
2001 Dougherty ER. Small sample issues for microarray-based classification. Comparative and Functional Genomics. 2: 28-34. PMID 18628896 DOI: 10.1002/Cfg.62  0.403
2001 Balagurunathan Y, Dougherty ER, Chen Y, Bitter ML, Trent JM. A random signal model for cDNA microarrays Proceedings of Spie - the International Society For Optical Engineering. 4266: 163-170. DOI: 10.1117/12.427985  0.546
2001 Dougherty ER, Barrera J. Nonlinear filtering and pattern recognition: Are they the same? Proceedings of Spie. 4304: 1-6. DOI: 10.1117/12.424961  0.326
2001 Kamat VG, Dougherty ER. Real Time Large Window Binary Filter Design Proceedings of Spie. 4303: 89-100. DOI: 10.1117/12.424960  0.303
2001 Dougherty E, Barrera J, Brun M, Kim S, Marcondes R, Chen Y, Bittner M, Trent J. Clustering algorithms: can anything be concluded? Nature Genetics. 27: 51-51. DOI: 10.1038/87060  0.519
2001 Dougherty ER, Barrera J, Mozelle G, Kim S, Brun M. Multiresolution analysis for optimal binary filters Journal of Mathematical Imaging and Vision. 14: 53-72. DOI: 10.1023/A:1008311431244  0.568
2001 Dougherty ER, Chen Y. Optimal and adaptive design of logical granulometric filters Advances in Imaging and Electron Physics. 117: 1-71. DOI: 10.1016/S1076-5670(01)80111-7  0.305
2001 Sivakumar K, Balagurunathan Y, Dougherty ER. Asymptotic joint normality of the granulometric moments Pattern Recognition Letters. 22: 1537-1543. DOI: 10.1016/S0167-8655(01)00101-5  0.626
2001 Grigoryan AM, Dougherty ER. Bayesian robust optimal linear filters Signal Processing. 81: 2503-2521. DOI: 10.1016/S0165-1684(01)00144-X  0.348
2001 Theera-Umpon N, Dougherty ER, Gader PD. Non-homothetic granulometric mixing theory with application to blood cell counting Pattern Recognition. 34: 2547-2560. DOI: 10.1016/S0031-3203(00)00156-4  0.337
2000 Kim S, Dougherty ER, Bittner ML, Chen Y, Sivakumar K, Meltzer P, Trent JM. General nonlinear framework for the analysis of gene interaction via multivariate expression arrays. Journal of Biomedical Optics. 5: 411-24. PMID 11092429 DOI: 10.1117/1.1289142  0.584
2000 Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, Radmacher M, Simon R, Yakhini Z, Ben-Dor A, Sampas N, Dougherty E, Wang E, Marincola F, Gooden C, et al. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature. 406: 536-40. PMID 10952317 DOI: 10.1038/35020115  0.304
2000 Kim S, Dougherty ER, Chen Y, Sivakumar K, Meltzer P, Trent JM, Bittner M. Multivariate measurement of gene expression relationships. Genomics. 67: 201-9. PMID 10903845 DOI: 10.1006/Geno.2000.6241  0.591
2000 Kamat VG, Dougherty ER, Barrera J. Bayesian multiresolution filter design Electronic Imaging. 3961: 22-33. DOI: 10.1117/12.379399  0.309
2000 Dougherty ER, Barrera J, Mozelle G, Kim S, Brun M. Multiresolution filter design Electronic Imaging. 3961: 12-21. DOI: 10.1117/12.379392  0.572
2000 Dougherty ER. Iterative design of morphological binary image operators Optical Engineering. 39: 3106. DOI: 10.1117/1.1327178  0.309
2000 Dougherty ER, Kim S, Chen Y. Coefficient of determination in nonlinear signal processing Signal Processing. 80: 2219-2235. DOI: 10.1016/S0165-1684(00)00079-7  0.606
2000 Hirata NS, Dougherty ER, Barrera J. A switching algorithm for design of optimal increasing binary filters over large windows Pattern Recognition. 33: 1059-1081. DOI: 10.1016/S0031-3203(99)00165-X  0.354
2000 Sivakumar K, Patel MJ, Kehtarnavaz N, Balagurunathan Y, Dougherty ER. A constant-time algorithm for erosions/dilations with applications to morphological texture feature computation Real-Time Imaging. 6: 223-239. DOI: 10.1006/Rtim.1999.0172  0.594
2000 Balagurunathan Y, Dougherty ER. Estimation of random-model parameters via linear systems with granulometric inputs Proceedings of Spie - the International Society For Optical Engineering. 4121: 11-15.  0.565
1999 Dougherty ER, Kim S, Bittner ML, Chen Y, Sivakumar K, Meltzer P, Trent JM. Nonlinear stochastic determination for gene expressions via cDNA microarrays Nature Genetics. 23: 41-41. DOI: 10.1038/14294  0.548
1999 Grigoryan AM, Dougherty ER. Design and analysis of robust binary filters in the context of a prior distribution for the states of nature Journal of Mathematical Imaging and Vision. 11: 239-254. DOI: 10.1023/A:1008356620614  0.319
1999 Sand F, Dougherty ER. Robustness of granulometric moments Pattern Recognition. 32: 1657-1665. DOI: 10.1016/S0031-3203(99)00028-X  0.324
1999 Handley JC, Dougherty ER. Maximum-likelihood estimation and optimal filtering in the nondirectional, one-dimensional binomial germ-grain model Pattern Recognition. 32: 1529-1541. DOI: 10.1016/S0031-3203(99)00019-9  0.349
1998 Balagurunathan Y, Dougherty ER. Morphological measurement of surface roughness Proceedings of Spie - the International Society For Optical Engineering. 3521: 95-103. DOI: 10.1117/12.326949  0.498
1998 Kim S, Batman S, Dougherty ER. A fast run-length-based algorithm for one-dimensional flat opening Proceedings of Spie - the International Society For Optical Engineering. 3452: 158-163. DOI: 10.1117/12.323467  0.476
1998 Chen Y, Dougherty ER. Queueing interpretation of adaptive reconstructive multiparameter τ-opening filters Proceedings of Spie. 3304: 59-65. DOI: 10.1117/12.304616  0.301
1998 Grigoryan AM, Dougherty ER. Designing robust binary filters Proceedings of Spie - the International Society For Optical Engineering. 3304: 14-24. DOI: 10.1117/12.304598  0.354
1998 Sarca OV, Dougherty ER, Astola J. Secondarily constrained Boolean filters Signal Processing. 71: 247-263. DOI: 10.1016/S0165-1684(98)00149-2  0.341
1998 Sand F, Dougherty ER. Asymptotic granulometric mixing theorem: Morphological estimation of sizing parameters and mixture proportions Pattern Recognition. 31: 53-61. DOI: 10.1016/S0031-3203(97)00022-8  0.333
1997 Chen Y, Dougherty ER, Bittner ML. Ratio-based decisions and the quantitative analysis of cDNA microarray images. Journal of Biomedical Optics. 2: 364-74. PMID 23014960 DOI: 10.1117/12.281504  0.309
1997 Sand FM, Dougherty ER. Robustness of the pattern spectrum Electronic Imaging. 3026: 262-265. DOI: 10.1117/12.271128  0.32
1997 Dougherty ER. Automatic programming of binary morphological machines by design of statistically optimal operators in the context of computational learning theory Journal of Electronic Imaging. 6: 54. DOI: 10.1117/12.260010  0.329
1997 Dougherty ER. Size distributions for multivariate morphological granulometries: texture classification and statistical properties Optical Engineering. 36: 1518. DOI: 10.1117/1.601340  0.314
1997 Dougherty ER. Journal of Mathematical Imaging and Vision. 7: 175-192. DOI: 10.1023/A:1008209706862  0.302
1997 Handley JC, Dougherty ER. Maximum-Likelihood Estimation for the Two-Dimensional Discrete Boolean Random Set and Function Models Using Multidimensional Linear Samples Graphical Models and Image Processing. 59: 221-231. DOI: 10.1006/Gmip.1997.0432  0.358
1996 Dougherty ER, Barrera J. Morphological paradigm for loss-function-based design of digital filters Proceedings of Spie. 2753: 90-97. DOI: 10.1117/12.243577  0.342
1996 HANDLEY JC, DOUGHERTY ER. Maximum-likelihood estimation for discrete Boolean models using linear samples Journal of Microscopy. 182: 67-78. DOI: 10.1046/J.1365-2818.1996.124405.X  0.329
1996 Handley JC, Dougherty ER. Optimal nonlinear filter for signal-union-noise and runlength analysis in the directional one-dimensional discrete Boolean random set model Signal Processing. 51: 147-166. DOI: 10.1016/0165-1684(96)00040-0  0.33
1996 Dougherty ER, Chen Y, Waks A. Bayesian morphological peak estimation and its application to chromosome counting via fluorescence In situ hybridization Pattern Recognition. 29: 987-996. DOI: 10.1016/0031-3203(95)00138-7  0.305
1995 Dougherty ER, Handley JC. Recursive maximum-likelihood estimation in the one-dimensional discrete Boolean random set model Signal Processing. 43: 1-15. DOI: 10.1016/0165-1684(94)00139-Q  0.319
1995 Dougherty ER, Cheng Y. Morphological pattern-spectrum classification of noisy shapes: Exterior granulometries Pattern Recognition. 28: 81-98. DOI: 10.1016/0031-3203(94)00083-X  0.301
1994 Dougherty ER, Loce RP. Precision of morphological-representation estimators for translation-invariant binary filters: increasing and nonincreasing Signal Processing. 40: 129-154. DOI: 10.1016/0165-1684(94)90064-7  0.306
1993 Dougherty ER. Optimal mean-absolute-error hit-or-miss filters: morphological representation and estimation of the binary conditional expectation Optical Engineering. 32: 815. DOI: 10.1117/12.132376  0.315
1993 Mathew AV, Dougherty ER, Swarnakar V. Efficient derivation of the optimal mean-square binary morphological filter from the conditional expectation via a switching algorithm for discrete power-set lattice Circuits, Systems, and Signal Processing. 12: 409-430. DOI: 10.1007/Bf01223318  0.305
1992 Dougherty ER, Zhao D. Noise-model-based morphological shape recognition Proceedings of Spie. 1708: 736-747. DOI: 10.1117/12.58616  0.312
1992 Newell JT, Dougherty ER. Maximum-likelihood morphological granulometric classifiers Elektrotechnik Und Informationstechnik. 1657: 386-395. DOI: 10.1117/12.58344  0.312
1992 Dougherty ER. Optimal mean-square N-observation digital morphological filters Cvgip: Image Understanding. 55: 55-72. DOI: 10.1016/1049-9660(92)90006-O  0.311
1992 Dougherty ER. Optimal mean-square N-observation digital morphological filters Cvgip: Image Understanding. 55: 36-54. DOI: 10.1016/1049-9660(92)90005-N  0.349
1992 Loge RP, Dougherty ER. Optimal morphological restoration: The morphological filter mean-absolute-error theorem Journal of Visual Communication and Image Representation. 3: 412-432. DOI: 10.1016/1047-3203(92)90043-S  0.328
1992 Sand F, Dougherty ER. Asymptotic normality of the morphological pattern-spectrum moments and orthogonal granulometric generators Journal of Visual Communication and Image Representation. 3: 203-214. DOI: 10.1016/1047-3203(92)90016-M  0.323
1992 Dougherty ER, Zhao D. Model-based characterization of statistically optimal design for morphological shape recognition algorithms via the hit-or-miss transform Journal of Visual Communication and Image Representation. 3: 147-160. DOI: 10.1016/1047-3203(92)90012-I  0.365
1992 Dougherty ER, Haralick RM, Chen Y, Agerskov C, Jacobi U, Sloth PH. Estimation of optimal morphological τ-opening parameters based on independent observation of signal and noise pattern spectra Signal Processing. 29: 265-281. DOI: 10.1016/0165-1684(92)90086-C  0.342
1992 Dougherty ER, Newell JT, Pelz JB. Morphological texture-based maximum-likelihood pixel classification based on local granulometric moments Pattern Recognition. 25: 1181-1198. DOI: 10.1016/0031-3203(92)90020-J  0.331
1992 Dougherty ER, Haralick RM. Hole-spectrum representation and model-based optimal morphological restoration of binary images degraded by subtractive noise Journal of Mathematical Imaging and Vision. 1: 257-278. DOI: 10.1007/Bf00129879  0.331
1992 Sand F, Dougherty ER. Statistics of the morphological pattern-spectrum moments for a random-grain model Journal of Mathematical Imaging and Vision. 1: 121-135. DOI: 10.1007/Bf00122207  0.301
1987 Dougherty ER, Giardina CR. Error Bounds for Morphologically Derived Measurements Siam Journal On Applied Mathematics. 47: 425-440. DOI: 10.1137/0147028  0.33
Show low-probability matches.