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Zuyi Huang, Ph.D. - Publications

Affiliations: 
2010 Texas A & M University, College Station, TX, United States 
Area:
Chemical Engineering, Bioinformatics Biology, Systematic Biology
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hanes R, Zhang F, Huang Z. Protein Interaction Network Analysis to Investigate Stress Response, Virulence, and Antibiotic Resistance Mechanisms in . Microorganisms. 11. PMID 37110353 DOI: 10.3390/microorganisms11040930  0.528
2022 Hopkins B, Fisher J, Chang M, Tang X, Du Z, Kelly WJ, Huang Z. An In-Vitro Study of the Expansion and Transcriptomics of CD and CD Naïve and Memory T Cells Stimulated by IL-2, IL-7 and IL-15. Cells. 11. PMID 35626739 DOI: 10.3390/cells11101701  0.714
2022 Zhang F, Graham J, Zhai T, Liu Y, Huang Z. Discovery of MurA Inhibitors as Novel Antimicrobials through an Integrated Computational and Experimental Approach. Antibiotics (Basel, Switzerland). 11. PMID 35453279 DOI: 10.3390/antibiotics11040528  0.527
2022 Xu Z, Zhang H, Huang Z. A Continuous Markov-Chain Model for the Simulation of COVID-19 Epidemic Dynamics. Biology. 11. PMID 35205057 DOI: 10.3390/biology11020190  0.678
2021 Zhai T, Zhang F, Haider S, Kraut D, Huang Z. An Integrated Computational and Experimental Approach to Identifying Inhibitors for SARS-CoV-2 3CL Protease. Frontiers in Molecular Biosciences. 8: 661424. PMID 34079818 DOI: 10.3389/fmolb.2021.661424  0.52
2020 Coppola C, Hopkins B, Huhn S, Du Z, Huang Z, Kelly WJ. Investigation of the Impact from IL-2, IL-7, and IL-15 on the Growth and Signaling of Activated CD4 T Cells. International Journal of Molecular Sciences. 21. PMID 33105566 DOI: 10.3390/ijms21217814  0.723
2020 Ceruso M, Clement JA, Todd MJ, Zhang F, Huang Z, Anastasio A, Pepe T, Liu Y. The Inhibitory Effect of Plant Extracts on Growth of the Foodborne Pathogen, . Antibiotics (Basel, Switzerland). 9. PMID 32545188 DOI: 10.3390/Antibiotics9060319  0.546
2020 Zhang F, Zhai T, Haider S, Liu Y, Huang ZJ. Synergistic Effect of Chlorogenic Acid and Caffeic Acid with Fosfomycin on Growth Inhibition of a Resistant Strain. Acs Omega. 5: 7537-7544. PMID 32280897 DOI: 10.1021/acsomega.0c00352  0.519
2018 Li X, Scott K, Kelly WJ, Huang Z. Development of a Computational Fluid Dynamics Model for Scaling-up Ambr Bioreactors Biotechnology and Bioprocess Engineering. 23: 710-725. DOI: 10.1007/S12257-018-0063-5  0.324
2017 Kelly W, Veigne S, Li X, Huang Z, Schaefer E. Optimizing Performance of Semi-Continuous Cell Culture in an Ambr15™ Microbioreactor Using Dynamic Flux Balance Modelling. Biotechnology Progress. PMID 29152911 DOI: 10.1002/Btpr.2585  0.642
2016 Ribaudo N, Li X, Davis B, Wood TK, Huang ZJ. A Genome-Scale Modeling Approach to Quantify Biofilm Component Growth of Salmonella Typhimurium. Journal of Food Science. PMID 27992644 DOI: 10.1111/1750-3841.13565  0.726
2016 Li X, Liu Y, Jia Q, LaMacchia V, O'Donoghue K, Huang Z. A systems biology approach to investigate the antimicrobial activity of oleuropein. Journal of Industrial Microbiology & Biotechnology. PMID 27771782 DOI: 10.1007/S10295-016-1841-8  0.662
2015 Li X, Ribaudo N, Huang ZJ. A Kinetic-Model-Based Approach to Identify Malfunctioning Components in Signal Transduction Pathways from Artificial Clinical Data. Biomed Research International. 2015: 415083. PMID 26697484 DOI: 10.1155/2015/415083  0.654
2015 Xu Z, Islam S, Wood TK, Huang Z. An Integrated Modeling and Experimental Approach to Study the Influence of Environmental Nutrients on Biofilm Formation of Pseudomonas aeruginosa. Biomed Research International. 2015: 506782. PMID 25954752 DOI: 10.1155/2015/506782  0.699
2014 Ping Q, Zhang C, Chen X, Zhang B, Huang Z, He Z. Mathematical model of dynamic behavior of microbial desalination cells for simultaneous wastewater treatment and water desalination. Environmental Science & Technology. 48: 13010-9. PMID 25316438 DOI: 10.1021/Es504089X  0.751
2013 Xu Z, Fang X, Wood TK, Huang ZJ. A systems-level approach for investigating Pseudomonas aeruginosa biofilm formation. Plos One. 8: e57050. PMID 23451140 DOI: 10.1371/journal.pone.0057050  0.67
2013 Kelly W, Kamguia G, Mullen P, Ubiera A, Göklen K, Huang Z, Jones G. Using a two species competitive binding model to predict expanded bed breakthrough of a recombinant protein expressed in a high cell density fermentation Biotechnology and Bioprocess Engineering. 18: 546-559. DOI: 10.1007/S12257-012-0754-2  0.315
2012 Huang Z, Chu Y, Hahn J. Computing transcription factor distribution profiles from green fluorescent protein reporter data Chemical Engineering Science. 68: 340-354. DOI: 10.1016/J.Ces.2011.09.044  0.75
2011 Moya C, Huang Z, Cheng P, Jayaraman A, Hahn J. Investigation of IL-6 and IL-10 signalling via mathematical modelling. Iet Systems Biology. 5: 15. PMID 21261398 DOI: 10.1049/Iet-Syb.2009.0060  0.753
2011 Chu Y, Huang Z, Hahn J. Global Sensitivity Analysis Procedure Accounting for Effect of Available Experimental Data Industrial & Engineering Chemistry Research. 50: 1294-1304. DOI: 10.1021/Ie101283G  0.749
2010 Huang Z, Moya C, Jayaraman A, Hahn J. Using the Tet-On system to develop a procedure for extracting transcription factor activation dynamics. Molecular Biosystems. 6: 1883-9. PMID 20552111 DOI: 10.1039/C003229H  0.721
2010 Huang Z, Chu Y, Cunha B, Hahn J. Generalisation of a procedure for computing transcription factor profiles. Iet Systems Biology. 4: 108-18. PMID 20232991 DOI: 10.1049/Iet-Syb.2008.0140  0.756
2010 Kaunas R, Huang Z, Hahn J. A kinematic model coupling stress fiber dynamics with JNK activation in response to matrix stretching. Journal of Theoretical Biology. 264: 593-603. PMID 20171229 DOI: 10.1016/J.Jtbi.2010.02.020  0.701
2009 Chu Y, Huang Z, Hahn J. Improving prediction capabilities of complex dynamic models via parameter selection and estimation Chemical Engineering Science. 64: 4178-4185. DOI: 10.1016/J.Ces.2009.06.057  0.763
2009 Huang Z, Hahn J. Fuzzy modeling of signal transduction networks Chemical Engineering Science. 64: 2044-2056. DOI: 10.1016/J.Ces.2009.01.041  0.739
2008 Huang Z, Senocak F, Jayaraman A, Hahn J. Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter data. Bmc Systems Biology. 2: 64. PMID 18637177 DOI: 10.1186/1752-0509-2-64  0.743
2008 Huang Z, Hahn J. Fuzzy Modeling of Signal Transduction Networks Ifac Proceedings Volumes. 41: 15867-15872. DOI: 10.3182/20080706-5-Kr-1001.02682  0.746
2007 Brewer J, Huang Z, Singh AK, Misra M, Hahn J. Sensor Network Design via Observability Analysis and Principal Component Analysis Industrial & Engineering Chemistry Research. 46: 8026-8032. DOI: 10.1021/Ie070547N  0.722
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