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Xiangyun Qiu, Ph.D. - Publications

Affiliations: 
2004 Michigan State University, East Lansing, MI 
Area:
Condensed Matter Physics
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50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Srivastava A, Timsina R, Heo S, Dewage SW, Kirmizialtin S, Qiu X. Structure-guided DNA-DNA attraction mediated by divalent cations. Nucleic Acids Research. PMID 32542319 DOI: 10.1093/Nar/Gkaa499  0.353
2020 Meng W, Timsina R, Bull A, Andresen K, Qiu X. Additive Modulation of DNA-DNA Interactions by Interstitial Ions. Biophysical Journal. PMID 32470322 DOI: 10.1016/J.Bpj.2020.05.001  0.372
2019 Timsina R, Qiu X. Histone Tail-DNA Interactions: Charge Regulation and Sequence Specificity Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.434  0.316
2019 Meng W, Timsina R, Andresen K, Qiu X. Additivity in Ion-Modulated DNA-DNA Interactions Biophysical Journal. 116: 360a. DOI: 10.1016/J.Bpj.2018.11.1958  0.353
2019 Srivastava A, Timsina R, Dewage SM, Qiu X, Kirmizialtin S. Sequence Effects on Mg+2 Ion Mediated DNA - DNA Interactions Biophysical Journal. 116. DOI: 10.1016/J.Bpj.2018.11.1957  0.346
2017 Zhang W, Howell SC, Wright DW, Heindel A, Qiu X, Chen J, Curtis JE. Combined Monte Carlo/torsion-angle molecular dynamics for ensemble modeling of proteins, nucleic acids and carbohydrates. Journal of Molecular Graphics & Modelling. 73: 179-190. PMID 28292714 DOI: 10.1016/J.Jmgm.2017.02.010  0.312
2016 Howell SC, Qiu X, Curtis JE. Monte Carlo simulation algorithm for B-DNA. Journal of Computational Chemistry. 37: 2553-63. PMID 27671358 DOI: 10.1002/Jcc.24474  0.397
2016 Qiu X, Ke F, Timsina R, Khripin CY, Zheng M. Attractive Interactions between DNA–Carbon Nanotube Hybrids in Monovalent Salts The Journal of Physical Chemistry C. 120: 13831-13835. DOI: 10.1021/Acs.Jpcc.6B04623  0.359
2016 Hansen S, Meng W, Bull A, Qiu X, Andresen K. Elucidating the Role of Electrostatics in Condensed DNA Arrays Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.3018  0.362
2015 Li J, Wijeratne SS, Qiu X, Kiang CH. DNA under Force: Mechanics, Electrostatics, and Hydration. Nanomaterials (Basel, Switzerland). 5: 246-267. PMID 28347009 DOI: 10.3390/Nano5010246  0.345
2015 Li D, Liu T, Zuo X, Li T, Qiu X, Evilevitch A. Ionic switch controls the DNA state in phage λ. Nucleic Acids Research. 43: 6348-58. PMID 26092697 DOI: 10.1093/Nar/Gkv611  0.39
2015 Ke F, Qiu X. Nanoscale Structure and Interaction of Condensed Phases of DNA-Carbon Nanotube Hybrids Journal of Physical Chemistry C. 119: 15763-15769. DOI: 10.1021/Acs.Jpcc.5B04794  0.397
2015 Howell SC, Meng W, Andresen K, Mendonca A, Yuan C, Zhou B, Bai Y, Curtis JE, Qiu X. Ensemble Models of Nucleosome Arrays Constrained by Small-Angle X-Ray Scattering Biophysical Journal. 108: 394a. DOI: 10.1016/J.Bpj.2014.11.2160  0.382
2015 Andresen K, Meng W, Bull A, Qiu X. Ion Binding and Electrostatics in Condensed DNA Arrays Probed by Ion Counting Techniques Biophysical Journal. 108: 233a. DOI: 10.1016/J.Bpj.2014.11.1289  0.349
2014 Zhou J, Wen H, Ke F, Shi D, Brisky AA, Wang N, Zhu L, Qiu X, Liang D. Capsules with a hierarchical shell structure assembled by aminoglycosides and DNA via the kinetic path. Chemical Communications (Cambridge, England). 50: 9525-8. PMID 25011694 DOI: 10.1039/C4Cc03508A  0.311
2013 Andresen K, Jimenez-Useche I, Howell SC, Yuan C, Qiu X. Solution scattering and FRET studies on nucleosomes reveal DNA unwrapping effects of H3 and H4 tail removal. Plos One. 8: e78587. PMID 24265699 DOI: 10.1371/Journal.Pone.0078587  0.338
2013 Qiu X, Giannini J, Howell SC, Xia Q, Ke F, Andresen K. Ion competition in condensed DNA arrays in the attractive regime. Biophysical Journal. 105: 984-92. PMID 23972850 DOI: 10.1016/J.Bpj.2013.07.004  0.38
2013 Qiu X, Khripin CY, Ke F, Howell SC, Zheng M. Electrostatically driven interactions between hybrid DNA-carbon nanotubes. Physical Review Letters. 111: 048301. PMID 23931412 DOI: 10.1103/Physrevlett.111.048301  0.376
2013 Howell SC, Andresen K, Jimenez-Useche I, Yuan C, Qiu X. Elucidating internucleosome interactions and the roles of histone tails. Biophysical Journal. 105: 194-9. PMID 23823239 DOI: 10.1016/J.Bpj.2013.05.021  0.31
2013 Jimenez-Useche I, Ke J, Tian Y, Shim D, Howell SC, Qiu X, Yuan C. DNA methylation regulated nucleosome dynamics. Scientific Reports. 3: 2121. PMID 23817195 DOI: 10.1038/Srep02121  0.315
2013 Andresen K, Jimenez-Useche I, Howell SC, Yuan C, Qiu X. Solution Scattering and FRET Studies on Nucleosomes Reveal DNA Unwrapping Effects of H3 and H4 Tails Biophysical Journal. 104: 579a. DOI: 10.1016/J.Bpj.2012.11.3214  0.335
2013 Howell SC, Jimenez-Useche I, Andresen K, Yuan C, Qiu X. The Effects of Ion and Histone Modification on Tetra-Nucleosome Array Conformation Biophysical Journal. 104: 425a. DOI: 10.1016/J.Bpj.2012.11.2365  0.361
2012 Qiu X. Heat induced capsid disassembly and DNA release of bacteriophage λ. Plos One. 7: e39793. PMID 22808062 DOI: 10.1371/Journal.Pone.0039793  0.345
2012 Giannini J, Xia Q, Qiu X, Andresen K. Elucidating the Role of Ions in DNA Condensation: Measurements of the Ion Atmosphere Surrounding Condensed DNA Pellets using Inductively-Couple Plasma Atomic Emission Spectroscopy Biophysical Journal. 102: 636a. DOI: 10.1016/J.Bpj.2011.11.3465  0.373
2012 Howell SC, Andresen K, Yuan C, Qiu X. Quantify Cation-Dependent Forces Between Nucleosomes Biophysical Journal. 102: 636a. DOI: 10.1016/J.Bpj.2011.11.3463  0.32
2012 Andresen K, Qiu X, Yuan C. Elucidating Mechanisms of Nucleosome Aggregation: Low Resolution Structure Studies of a Variety of Nucleosome Core Particle Constructs as a Function of Changing Ion Conditions Biophysical Journal. 102: 636a. DOI: 10.1016/J.Bpj.2011.11.3462  0.304
2012 Xia Q, Qiu X. Sequence and Structure Dependent DNA-DNA Interactions Biophysical Journal. 102: 6-6. DOI: 10.1016/J.Bpj.2011.11.3461  0.379
2011 Giannini J, Qiu X, Andresen K. Determination of the Composition of the Ion Atmosphere of Condensed DNA Utilizing Inductively-Couple Plasma Atomic Emission Spectroscopy Biophysical Journal. 100: 77a. DOI: 10.1016/J.Bpj.2010.12.629  0.338
2011 Thomas DG, Rau DC, Qiu X. Mapping the Lengths of DNA Inside Partially Ejected Bacteriophage λ Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2383  0.372
2011 Howell SC, Qiu X. Contrast Variation SANS Study of DNA Packaging in Bacteriophage λ Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2382  0.399
2010 Qiu X, Parsegian VA, Rau DC. Divalent counterion-induced condensation of triple-strand DNA. Proceedings of the National Academy of Sciences of the United States of America. 107: 21482-6. PMID 21098260 DOI: 10.1073/Pnas.1003374107  0.376
2010 Qiu X, Setlow P, Rau DC, Parsegian VA. Examples of X-Ray Scattering Studies of Biological Systems under Extreme Conditions Biophysical Journal. 98: 160a. DOI: 10.1016/J.Bpj.2009.12.863  0.373
2009 Pabit SA, Qiu X, Lamb JS, Li L, Meisburger SP, Pollack L. Both helix topology and counterion distribution contribute to the more effective charge screening in dsRNA compared with dsDNA. Nucleic Acids Research. 37: 3887-96. PMID 19395592 DOI: 10.1093/Nar/Gkp257  0.34
2009 Pabit SA, Qiu X, Lamb JS, Li L, Pollack L. Comparing Short dsRNA and dsDNA: Charge Screening Efficiency and Counterion Distribution Biophysical Journal. 96: 578a. DOI: 10.1016/J.Bpj.2008.12.3021  0.342
2009 Qiu X, Rau DC, Parsegian VA, Fang LT, Knobler C, Gelbart WM. Charting the Structure and Energetics of Packaged DNA in Bacteriophages Biophysical Journal. 96: 422a. DOI: 10.1016/J.Bpj.2008.12.2159  0.369
2008 Lamb J, Kwok L, Qiu X, Andresen K, Park HY, Pollack L. Reconstructing three-dimensional shape envelopes from time-resolved small-angle X-ray scattering data. Journal of Applied Crystallography. 41: 1046-1052. PMID 19529835 DOI: 10.1107/S0021889808028264  0.324
2008 Qiu X, Andresen K, Lamb JS, Kwok LW, Pollack L. Abrupt transition from a free, repulsive to a condensed, attractive DNA phase, induced by multivalent polyamine cations. Physical Review Letters. 101: 228101. PMID 19113524 DOI: 10.1103/Physrevlett.101.228101  0.401
2008 Andresen K, Qiu X, Pabit SA, Lamb JS, Park HY, Kwok LW, Pollack L. Mono- and trivalent ions around DNA: a small-angle scattering study of competition and interactions. Biophysical Journal. 95: 287-95. PMID 18339743 DOI: 10.1529/Biophysj.107.123174  0.381
2007 Qiu X, Andresen K, Kwok LW, Lamb JS, Park HY, Pollack L. Inter-DNA attraction mediated by divalent counterions. Physical Review Letters. 99: 038104. PMID 17678334 DOI: 10.1103/Physrevlett.99.038104  0.407
2007 Božin ES, Qiu X, Worhatch RJ, Paglia G, Schmidt M, Radaelli PG, Mitchell JF, Chatterji T, Proffen T, Billinge SJL. Utilizing total scattering to study the Jahn-Teller transition in La1-xCaxMnO3 Zeitschrift FüR Kristallographie Supplements. 2007: 429-434. DOI: 10.1524/Zksu.2007.2007.Suppl_26.429  0.605
2007 Campi G, Proffen T, Qiu X, Bozin ES, Billinge SJL, Agrestini S, Saini NL, Bianconi A. Local lattice dynamics in the Mg 0.5Al 0.5B 2 superconductor Journal of Superconductivity and Novel Magnetism. 20: 505-510. DOI: 10.1007/S10948-007-0277-9  0.597
2006 Qiu X, Kwok LW, Park HY, Lamb JS, Andresen K, Pollack L. Measuring inter-DNA potentials in solution. Physical Review Letters. 96: 138101. PMID 16712040 DOI: 10.1103/Physrevlett.96.138101  0.397
2006 Campi G, Cappelluti E, Proffen T, Qiu X, Bozin ES, Billinge SJL, Agrestini S, Saini NL, Bianconi A. Study of temperature dependent atomic correlations in MgB2 European Physical Journal B. 52: 15-21. DOI: 10.1140/Epjb/E2006-00269-7  0.615
2006 Božin ES, Qiu X, Schmidt M, Paglia G, Mitchell JF, Radaelli PG, Proffen T, Billinge SJL. Local structural aspects of the orthorhombic to pseudo-cubic phase transformation in La1 - x Cax MnO3 Physica B: Condensed Matter. 385: 110-112. DOI: 10.1016/J.Physb.2006.05.137  0.621
2005 Qiu X, Proffen T, Mitchell JF, Billinge SJ. Orbital correlations in the pseudocubic O and rhombohedral R phases of LaMnO3. Physical Review Letters. 94: 177203. PMID 15904332 DOI: 10.1103/Physrevlett.94.177203  0.618
2004 Derakhshan S, Assoud A, Kleinke KM, Dashjav E, Qiu X, Billinge SJ, Kleinke H. Planar nets of Ti atoms comprising squares and rhombs in the new binary antimonide Ti2Sb. Journal of the American Chemical Society. 126: 8295-302. PMID 15225072 DOI: 10.1021/Ja048262E  0.62
2004 Chupas PJ, Chaudhuri S, Hanson JC, Qiu X, Lee PL, Shastri SD, Billinge SJ, Grey CP. Probing local and long-range structure simultaneously: an in situ study of the high-temperature phase transition of alpha-AlF3. Journal of the American Chemical Society. 126: 4756-7. PMID 15080661 DOI: 10.1021/Ja031553N  0.61
2004 Qiu X, Thompson JW, Billinge SJL. PDFgetX2: a GUI-driven program to obtain the pair distribution function from X-ray powder diffraction data Journal of Applied Crystallography. 37: 678-678. DOI: 10.1107/S0021889804011744  0.3
2004 Qiu X, Božin ES, Juhas P, Proffen T, Billinge SJL. Reciprocal-space instrumental effects on the real-space neutron atomic pair distribution function Journal of Applied Crystallography. 37: 110-116. DOI: 10.1107/S0021889803026670  0.605
2003 Chupas PJ, Qiu X, Hanson JC, Lee PL, Grey CP, Billinge SJL. Rapid-acquisition pair distribution function (RA-PDF) analysis Journal of Applied Crystallography. 36: 1342-1347. DOI: 10.1107/S0021889803017564  0.339
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