☰

Xiang Qin, Ph.D. - Publications

Affiliations: 
2000 The University of Texas Graduate School of Biomedical Sciences at Houston 
Area:
Microbiology Biology, Molecular Biology, Genetics
Tree Info Similar researchers PubMed Report error

58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Carter H, Clark J, Carlin LG, Vaughan E, Rajan A, Olvera A, Yu X, Zeng XL, Kambal A, Holder M, Qin X, Gibbs RA, Petrosino JF, Muzny DM, Doddapaneni H, et al. Functional Genomics of Gastrointestinal Isolated from Patients with Cancer and Diarrhea. Biorxiv : the Preprint Server For Biology. PMID 37398483 DOI: 10.1101/2023.05.31.543115  0.32
2021 Doddapaneni H, Cregeen SJ, Sucgang R, Meng Q, Qin X, Avadhanula V, Chao H, Menon V, Nicholson E, Henke D, Piedra FA, Rajan A, Momin Z, Kottapalli K, Hoffman KL, et al. Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals. Plos One. 16: e0244468. PMID 34432798 DOI: 10.1371/journal.pone.0244468  0.367
2020 Doddapaneni H, Cregeen SJ, Sucgang R, Meng Q, Qin X, Avadhanula V, Chao H, Menon V, Nicholson E, Henke D, Piedra FA, Rajan A, Momin Z, Kottapalli K, Hoffman KL, et al. Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals. Biorxiv : the Preprint Server For Biology. PMID 33330863 DOI: 10.1101/2020.12.11.421057  0.396
2020 Doddapaneni H, Cregeen SJ, Sucgang R, Meng Q, Qin X, Avadhanula V, Chao H, Menon V, Nicholson E, Henke D, Piedra FA, Rajan A, Momin Z, Kottapalli K, Hoffman KL, et al. Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals. Biorxiv : the Preprint Server For Biology. PMID 32766579 DOI: 10.1101/2020.07.27.223495  0.396
2018 Numanagić I, Malikić S, Ford M, Qin X, Toji L, Radovich M, Skaar TC, Pratt VM, Berger B, Scherer S, Sahinalp SC. Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes. Nature Communications. 9: 828. PMID 29483503 DOI: 10.1038/S41467-018-03273-1  0.402
2016 Ling PD, Long SY, Zong JC, Heaggans SY, Qin X, Hayward GS. Comparison of the Gene Coding Contents and Other Unusual Features of the GC-Rich and AT-Rich Branch Probosciviruses. Msphere. 1. PMID 27340696 DOI: 10.1128/mSphere.00091-16  0.325
2016 Ling PD, Long SY, Fuery A, Peng RS, Heaggans SY, Qin X, Worley KC, Dugan S, Hayward GS. Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 4, the First Example of a GC-Rich Branch Proboscivirus. Msphere. 1. PMID 27340695 DOI: 10.1128/mSphere.00081-15  0.43
2016 Gordon AS, Fulton RS, Qin X, Mardis ER, Nickerson DA, Scherer S. PGRNseq: a targeted capture sequencing panel for pharmacogenetic research and implementation. Pharmacogenetics and Genomics. PMID 26736087 DOI: 10.1097/Fpc.0000000000000202  0.409
2016 Liu Y, Murali SC, Harris RA, English AC, Qin X, Skinner E, Richards S, Rogers J, Han Y, Vee V, Wang M, Meng Q, Heaton MP, Smith TPL, Dalrymple BP, et al. P1009 Sheep reference genome sequence updates: Texel improvements and Rambouillet progress Journal of Animal Science. 94: 18-19. DOI: 10.2527/Jas2016.94Supplement418B  0.465
2015 Yerrapragada S, Shukla A, Hallsworth-Pepin K, Choi K, Wollam A, Clifton S, Qin X, Muzny D, Raghuraman S, Ashki H, Uzman A, Highlander SK, Fryszczyn BG, Fox GE, Tirumalai MR, et al. Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601. Genome Announcements. 3. PMID 25953173 DOI: 10.1128/Genomea.00355-15  0.617
2015 Foote AD, Liu Y, Thomas GW, Vina? T, Alföldi J, Deng J, Dugan S, van Elk CE, Hunter ME, Joshi V, Khan Z, Kovar C, Lee SL, Lindblad-Toh K, Mancia A, ... ... Qin X, et al. Convergent evolution of the genomes of marine mammals. Nature Genetics. 47: 272-5. PMID 25621460 DOI: 10.1038/Ng.3198  0.443
2014 Yang W, Yoshigoe K, Qin X, Liu JS, Yang JY, Niemierko A, Deng Y, Liu Y, Dunker A, Chen Z, Wang L, Xu D, Arabnia HR, Tong W, Yang M. Identification of genes and pathways involved in kidney renal clear cell carcinoma. Bmc Bioinformatics. 15: S2. PMID 25559354 DOI: 10.1186/1471-2105-15-S17-S2  0.361
2014 Yang JY, Dunker A, Liu JS, Qin X, Arabnia HR, Yang W, Niemierko A, Chen Z, Luo Z, Wang L, Liu Y, Xu D, Deng Y, Tong W, Yang M. Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. Bmc Bioinformatics. 15: I1. PMID 25559210 DOI: 10.1186/1471-2105-15-S17-I1  0.409
2014 Yang MQ, Yoshigoe K, Yang W, Tong W, Qin X, Dunker A, Chen Z, Arbania HR, Liu JS, Niemierko A, Yang JY. The emerging genomics and systems biology research lead to systems genomics studies. Bmc Genomics. 15: I1. PMID 25558922 DOI: 10.1186/1471-2164-15-S11-I1  0.432
2014 Boonma P, Spinler JK, Qin X, Jittaprasatsin C, Muzny DM, Doddapaneni H, Gibbs R, Petrosino J, Tumwasorn S, Versalovic J. Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35. Standards in Genomic Sciences. 9: 744-54. PMID 25197459 DOI: 10.4056/Sigs.5048907  0.364
2014 Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K. mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities. Bmc Genomics. 15: 257. PMID 24694284 DOI: 10.1186/1471-2164-15-257  0.391
2014 Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ. Phylogenomics and the dynamic genome evolution of the genus Streptococcus. Genome Biology and Evolution. 6: 741-53. PMID 24625962 DOI: 10.1093/Gbe/Evu048  0.607
2014 Thirumalapura NR, Qin X, Kuriakose JA, Walker DH. Complete Genome Sequence of Ehrlichia muris Strain AS145T, a Model Monocytotropic Ehrlichia Strain. Genome Announcements. 2. PMID 24482514 DOI: 10.1128/Genomea.01234-13  0.489
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Qin X, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.477
2013 Ling PD, Reid JG, Qin X, Muzny DM, Gibbs R, Petrosino J, Peng R, Zong JC, Heaggans SY, Hayward GS. Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 1A. Genome Announcements. 1: e0010613. PMID 23580705 DOI: 10.1128/Genomea.00106-13  0.466
2012 Zobaníková M, Mikolka P, Cejková D, Pospíšilová P, Chen L, Strouhal M, Qin X, Weinstock GM, Smajs D. Complete genome sequence of Treponema pallidum strain DAL-1. Standards in Genomic Sciences. 7: 12-21. PMID 23449808 DOI: 10.4056/Sigs.2615838  0.635
2012 English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RA. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. Plos One. 7: e47768. PMID 23185243 DOI: 10.1371/Journal.Pone.0047768  0.463
2012 Pětrošová H, Zobaníková M, Čejková D, Mikalová L, Pospíšilová P, Strouhal M, Chen L, Qin X, Muzny DM, Weinstock GM, Šmajs D. Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains. Plos Neglected Tropical Diseases. 6: e1832. PMID 23029591 DOI: 10.1371/Journal.Pntd.0001832  0.576
2012 Qin X, Galloway-Peña JR, Sillanpaa J, Roh JH, Nallapareddy SR, Chowdhury S, Bourgogne A, Choudhury T, Muzny DM, Buhay CJ, Ding Y, Dugan-Rocha S, Liu W, Kovar C, Sodergren E, et al. Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes. Bmc Microbiology. 12: 135. PMID 22769602 DOI: 10.1186/1471-2180-12-135  0.588
2012 Ward DV, Gevers D, Giannoukos G, Earl AM, Methé BA, Sodergren E, Feldgarden M, Ciulla DM, Tabbaa D, Arze C, Appelbaum E, Aird L, Anderson S, Ayvaz T, Belter E, ... ... Qin X, et al. Evaluation of 16s rDNA-based community profiling for human microbiome research Plos One. 7. PMID 22720093 DOI: 10.1371/Journal.Pone.0039315  0.509
2012 Cejková D, Zobaníková M, Chen L, Pospíšilová P, Strouhal M, Qin X, Mikalová L, Norris SJ, Muzny DM, Gibbs RA, Fulton LL, Sodergren E, Weinstock GM, Smajs D. Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence. Plos Neglected Tropical Diseases. 6: e1471. PMID 22292095 DOI: 10.1371/Journal.Pntd.0001471  0.641
2012 Galloway-Peña J, Roh JH, Latorre M, Qin X, Murray BE. Genomic and SNP analyses demonstrate a distant separation of the hospital and community-associated clades of Enterococcus faecium. Plos One. 7: e30187. PMID 22291916 DOI: 10.1371/Journal.Pone.0030187  0.459
2011 Sczesnak A, Segata N, Qin X, Gevers D, Petrosino JF, Huttenhower C, Littman DR, Ivanov II. The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host & Microbe. 10: 260-72. PMID 21925113 DOI: 10.1016/J.Chom.2011.08.005  0.425
2011 Arias CA, Panesso D, McGrath DM, Qin X, Mojica MF, Miller C, Diaz L, Tran TT, Rincon S, Barbu EM, Reyes J, Roh JH, Lobos E, Sodergren E, Pasqualini R, et al. Genetic basis for in vivo daptomycin resistance in enterococci. The New England Journal of Medicine. 365: 892-900. PMID 21899450 DOI: 10.1056/Nejmoa1011138  0.431
2011 Šmajs D, Zobaníková M, Strouhal M, Čejková D, Dugan-Rocha S, Pospíšilová P, Norris SJ, Albert T, Qin X, Hallsworth-Pepin K, Buhay C, Muzny DM, Chen L, Gibbs RA, Weinstock GM. Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay. Plos One. 6: e20415. PMID 21655244 DOI: 10.1371/Journal.Pone.0020415  0.661
2011 Galloway-Peña JR, Bourgogne A, Qin X, Murray BE. Diversity of the fsr-gelE region of the Enterococcus faecalis genome but conservation in strains with partial deletions of the fsr operon. Applied and Environmental Microbiology. 77: 442-51. PMID 21097591 DOI: 10.1128/Aem.00756-10  0.453
2010 Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton G, Buhay CJ, Ding Y, Dugan-Rocha SP, Muzny DM, Qin X, Gibbs RA, Leigh SR, Stumpf R, White BA, et al. Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential Plos One. 5. PMID 20865041 DOI: 10.1371/Journal.Pone.0012411  0.445
2010 Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, ... ... Qin X, et al. A catalog of reference genomes from the human microbiome. Science (New York, N.Y.). 328: 994-9. PMID 20489017 DOI: 10.1126/Science.1183605  0.664
2010 Kim DS, Singh KV, Nallapareddy SR, Qin X, Panesso D, Arias CA, Murray BE. The fms21 (pilA)-fms20 locus encoding one of four distinct pili of Enterococcus faecium is harboured on a large transferable plasmid associated with gut colonization and virulence. Journal of Medical Microbiology. 59: 505-7. PMID 20075113 DOI: 10.1099/Jmm.0.016238-0  0.364
2009 Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, ... ... Qin X, et al. Genomics. Genome project standards in a new era of sequencing. Science (New York, N.Y.). 326: 236-7. PMID 19815760 DOI: 10.1126/Science.1180614  0.632
2009 Sillanpää J, Nallapareddy SR, Qin X, Singh KV, Muzny DM, Kovar CL, Nazareth LV, Gibbs RA, Ferraro MJ, Steckelberg JM, Weinstock GM, Murray BE. A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I). Journal of Bacteriology. 191: 6643-53. PMID 19717590 DOI: 10.1128/Jb.00909-09  0.59
2009 Liu Y, Qin X, Song XZH, Jiang H, Shen Y, Durbin KJ, Lien S, Kent MP, Sodeland M, Ren Y, Zhang L, Sodergren E, Havlak P, Worley KC, Weinstock GM, et al. Bos taurus genome assembly Bmc Genomics. 10. PMID 19393050 DOI: 10.1186/1471-2164-10-180  0.581
2009 Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, ... ... Qin X, et al. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science (New York, N.Y.). 324: 528-32. PMID 19390050 DOI: 10.1126/Science.1167936  0.574
2009 Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, ... ... Qin X, et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science (New York, N.Y.). 324: 522-8. PMID 19390049 DOI: 10.1126/Science.1169588  0.644
2008 Sillanpää J, Nallapareddy SR, Prakash VP, Qin X, Höök M, Weinstock GM, Murray BE. Identification and phenotypic characterization of a second collagen adhesin, Scm, and genome-based identification and analysis of 13 other predicted MSCRAMMs, including four distinct pilus loci, in Enterococcus faecium. Microbiology (Reading, England). 154: 3199-211. PMID 18832325 DOI: 10.1099/Mic.0.2008/017319-0  0.564
2008 Bourgogne A, Garsin DA, Qin X, Singh KV, Sillanpaa J, Yerrapragada S, Ding Y, Dugan-Rocha S, Buhay C, Shen H, Chen G, Williams G, Muzny D, Maadani A, Fox KA, et al. Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF. Genome Biology. 9: R110. PMID 18611278 DOI: 10.1186/Gb-2008-9-7-R110  0.618
2008 Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, ... ... Qin X, et al. The complete genome of an individual by massively parallel DNA sequencing. Nature. 452: 872-6. PMID 18421352 DOI: 10.1038/Nature06884  0.658
2008 Durfee T, Nelson R, Baldwin S, Plunkett G, Burland V, Mau B, Petrosino JF, Qin X, Muzny DM, Ayele M, Gibbs RA, Csörgo B, Pósfai G, Weinstock GM, Blattner FR. The complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse Journal of Bacteriology. 190: 2597-2606. PMID 18245285 DOI: 10.1128/Jb.01695-07  0.642
2007 Aronstein KA, Murray KD, de León JH, Qin X, Weinstock GM. High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis. Mycologia. 99: 553-61. PMID 18065006 DOI: 10.3852/Mycologia.99.4.553  0.49
2007 Highlander SK, Hultén KG, Qin X, Jiang H, Yerrapragada S, Mason EO, Shang Y, Williams TM, Fortunov RM, Liu Y, Igboeli O, Petrosino J, Tirumalai M, Uzman A, Fox GE, et al. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. Bmc Microbiology. 7: 99. PMID 17986343 DOI: 10.1186/1471-2180-7-99  0.461
2007 Gioia J, Yerrapragada S, Qin X, Jiang H, Igboeli OC, Muzny D, Dugan-Rocha S, Ding Y, Hawes A, Liu W, Perez L, Kovar C, Dinh H, Lee S, Nazareth L, et al. Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. Plos One. 2: e928. PMID 17895969 DOI: 10.1371/Journal.Pone.0000928  0.464
2007 Karpathy SE, Qin X, Gioia J, Jiang H, Liu Y, Petrosino JF, Yerrapragada S, Fox GE, Haake SK, Weinstock GM, Highlander SK. Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium. Plos One. 2: e659. PMID 17668047 DOI: 10.1371/Journal.Pone.0000659  0.748
2007 Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Qin X, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247  0.611
2006 Qin X, Evans JD, Aronstein KA, Murray KD, Weinstock GM. Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis. Insect Molecular Biology. 15: 715-8. PMID 17069642 DOI: 10.1111/J.1365-2583.2006.00694.X  0.579
2006 Gioia J, Qin X, Jiang H, Clinkenbeard K, Lo R, Liu Y, Fox GE, Yerrapragada S, McLeod MP, McNeill TZ, Hemphill L, Sodergren E, Wang Q, Muzny DM, Homsi FJ, et al. The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny. Journal of Bacteriology. 188: 7257-66. PMID 17015664 DOI: 10.1128/Jb.00675-06  0.759
2004 McLeod MP, Qin X, Karpathy SE, Gioia J, Highlander SK, Fox GE, McNeill TZ, Jiang H, Muzny D, Jacob LS, Hawes AC, Sodergren E, Gill R, Hume J, Morgan M, et al. Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae. Journal of Bacteriology. 186: 5842-55. PMID 15317790 DOI: 10.1128/Jb.186.17.5842-5855.2004  0.731
2004 Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Qin X, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426  0.759
2001 Qin X, Singh KV, Weinstock GM, Murray BE. Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF. Journal of Bacteriology. 183: 3372-82. PMID 11344145 DOI: 10.1128/Jb.183.11.3372-3382.2001  0.519
2000 Nallapareddy SR, Qin X, Weinstock GM, Höök M, Murray BE. Enterococcus faecalis adhesin, ace, mediates attachment to extracellular matrix proteins collagen type IV and laminin as well as collagen type I. Infection and Immunity. 68: 5218-24. PMID 10948147 DOI: 10.1128/Iai.68.9.5218-5224.2000  0.466
2000 Qin X, Singh KV, Weinstock GM, Murray BE. Effects of Enterococcus faecalis fsr genes on production of gelatinase and a serine protease and virulence. Infection and Immunity. 68: 2579-86. PMID 10768947 DOI: 10.1128/Iai.68.5.2579-2586.2000  0.548
2000 Xu Y, Singh KV, Qin X, Murray BE, Weinstock GM. Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis. Infection and Immunity. 68: 815-23. PMID 10639451 DOI: 10.1128/Iai.68.2.815-823.2000  0.522
1998 Qin X, Singh KV, Xu Y, Weinstock GM, Murray BE. Effect of disruption of a gene encoding an autolysin of Enterococcus faecalis OG1RF Antimicrobial Agents and Chemotherapy. 42: 2883-2888. PMID 9797220 DOI: 10.1128/Aac.42.11.2883  0.489
1998 Singh KV, Qin X, Weinstock GM, Murray BE. Generation and testing of mutants of Enterococcus faecalis in a mouse peritonitis model. The Journal of Infectious Diseases. 178: 1416-20. PMID 9780263 DOI: 10.1086/314453  0.488
Show low-probability matches.