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Tao Ju, Ph.D. - Publications

Affiliations: 
2005 Rice University, Houston, TX 
Area:
Computer Science, Neuroscience Biology
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Li M, Shao MR, Zeng D, Ju T, Kellogg EA, Topp CN. Comprehensive 3D Phenotyping reveals Continuous Morphological Variation across Genetically Diverse Sorghum Inflorescences. The New Phytologist. PMID 32162345 DOI: 10.1111/Nph.16533  0.315
2019 Huang Z, Carr N, Ju T. Variational implicit point set surfaces Acm Transactions On Graphics. 38: 1-13. DOI: 10.1145/3306346.3322994  0.367
2018 Lazar R, Dym N, Kushinsky Y, Huang Z, Ju T, Lipman Y. Robust optimization for topological surface reconstruction Acm Transactions On Graphics. 37: 1-10. DOI: 10.1145/3197517.3201348  0.361
2017 Huang Z, Zou M, Carr N, Ju T. Topology-controlled reconstruction of multi-labelled domains from cross-sections Acm Transactions On Graphics. 36: 1-12. DOI: 10.1145/3072959.3073644  0.349
2017 Gori G, Sheffer A, Vining N, Rosales E, Carr N, Ju T. FlowRep Acm Transactions On Graphics. 36: 1-14. DOI: 10.1145/3072959.3073639  0.339
2017 Cao Y-, Ju T, Xu J, Hu S-. Extracting Sharp Features from RGB‐D Images Computer Graphics Forum. 36: 138-152. DOI: 10.1111/Cgf.13069  0.349
2017 Zhuang Y, Dou H, Carr N, Ju T. Feature-aligned segmentation using correlation clustering Computational Visual Media. 3: 147-160. DOI: 10.1007/S41095-016-0071-3  0.331
2016 Holloway M, Grimm C, Ju T. Template-based surface reconstruction from cross-sections Computers and Graphics (Pergamon). 58: 84-91. DOI: 10.1016/J.Cag.2016.05.012  0.347
2015 Zhang X, Dou H, Ju T, Xu J, Zhang S. Fusing Heterogeneous Features from Stacked Sparse Autoencoder for Histopathological Image Analysis. Ieee Journal of Biomedical and Health Informatics. PMID 26241980 DOI: 10.1109/Jbhi.2015.2461671  0.329
2015 Dou H, Baker ML, Ju T. Graph-based deformable matching of 3D line with application in protein fitting Visual Computer. 31: 967-977. DOI: 10.1007/S00371-015-1115-X  0.347
2014 Ju T, Cheng M, Wang X, Duan Y. A Robust Parity Test for Extracting Parallel Vectors in 3D. Ieee Transactions On Visualization and Computer Graphics. 20: 2526-34. PMID 26356966 DOI: 10.1109/Tvcg.2014.2346412  0.322
2014 Zhuang Y, Zou M, Carr N, Ju T. Anisotropic geodesics for live-wire mesh segmentation Computer Graphics Forum. 33: 111-120. DOI: 10.1111/Cgf.12479  0.364
2014 Cao YP, Ju T, Fu Z, Hu SM. Interactive Image-Guided Modeling of Extruded Shapes Computer Graphics Forum. 33: 101-110. DOI: 10.1111/Cgf.12478  0.361
2013 Gutekunst DJ, Liu L, Ju T, Prior FW, Sinacore DR. Reliability of clinically relevant 3D foot bone angles from quantitative computed tomography. Journal of Foot and Ankle Research. 6: 38. PMID 24044376 DOI: 10.1186/1757-1146-6-38  0.305
2013 Feng W, Huang J, Ju T, Bao H. Feature correspondences using Morse Smale complex User Modeling and User-Adapted Interaction. 29: 53-67. DOI: 10.1007/S00371-012-0674-3  0.376
2012 Baker ML, Baker MR, Hryc CF, Ju T, Chiu W. Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps. Biopolymers. 97: 655-68. PMID 22696403 DOI: 10.1002/Bip.22065  0.305
2011 Feng P, Ju T, Warren J. View-independent Contour Culling of 3D Density Maps for Far-field Viewing of Iso-surfaces. Computers & Graphics. 35: 561-568. PMID 21673830 DOI: 10.1016/J.Cag.2011.03.035  0.649
2011 Baker ML, Abeysinghe SS, Schuh S, Coleman RA, Abrams A, Marsh MP, Hryc CF, Ruths T, Chiu W, Ju T. Modeling protein structure at near atomic resolutions with Gorgon. Journal of Structural Biology. 174: 360-73. PMID 21296162 DOI: 10.1016/J.Jsb.2011.01.015  0.312
2011 Kindle LM, Kakadiaris IA, Ju T, Carson JP. A semiautomated approach for artefact removal in serial tissue cryosections Journal of Microscopy. 241: 200-206. PMID 21118219 DOI: 10.1111/J.1365-2818.2010.03424.X  0.309
2011 Liu L, Chambers EW, Letscher D, Ju T. Extended grassfire transform on medial axes of 2D shapes Cad Computer Aided Design. 43: 1496-1505. DOI: 10.1016/J.Cad.2011.09.002  0.335
2010 Abeysinghe S, Baker ML, Chiu W, Ju T. Semi-isometric registration of line features for flexible fitting of protein structures. Computer Graphics Forum : Journal of the European Association For Computer Graphics. 29: 2243-2252. PMID 21124809 DOI: 10.1111/J.1467-8659.2010.01813.X  0.302
2010 Carson J, Ju T, Bello M, Thaller C, Warren J, Kakadiaris IA, Chiu W, Eichele G. Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain. Methods (San Diego, Calif.). 50: 85-95. PMID 19698790 DOI: 10.1016/J.Ymeth.2009.08.005  0.547
2010 Ju T, Carson J, Liu L, Warren J, Bello M, Kakadiaris I. Subdivision meshes for organizing spatial biomedical data. Methods (San Diego, Calif.). 50: 70-6. PMID 19664714 DOI: 10.1016/J.Ymeth.2009.07.012  0.555
2010 Liu L, Chambers EW, Letscher D, Ju T. A simple and robust thinning algorithm on cell complexes Computer Graphics Forum. 29: 2253-2260. DOI: 10.1111/J.1467-8659.2010.01814.X  0.342
2010 Li Y, Ju T, Hu SM. Instant propagation of sparse edits on images and videos Computer Graphics Forum. 29: 2049-2054. DOI: 10.1111/J.1467-8659.2010.01791.X  0.357
2010 Feng P, Ju T, Warren J. Piecewise tri-linear contouring for multi-material volumes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6130: 43-56. DOI: 10.1007/978-3-642-13411-1_4  0.593
2009 Abraham C, Low D, Sowell R, Gokhroo G, Grimm C, Ju T, Liu L. SU-FF-I-106: Volume Viewer: A Segmentation and Surface Reconstruction Toolset for Non-Transverse Image Planes Medical Physics. 36: 2459-2459. DOI: 10.1118/1.3181227  0.341
2009 Ju T. Fixing geometric errors on polygonal models: A survey Journal of Computer Science and Technology. 24: 19-29. DOI: 10.1007/S11390-009-9206-7  0.301
2009 Grimm C, Ju T, Phan L, Hughes J. Adaptive smooth surface fitting with manifolds The Visual Computer. 25: 589-597. DOI: 10.1007/S00371-009-0334-4  0.313
2009 Abeysinghe SS, Ju T. Interactive skeletonization of intensity volumes Visual Computer. 25: 627-635. DOI: 10.1007/S00371-009-0325-5  0.356
2009 Yao CY, Chu HK, Ju T, Lee TY. Compatible quadrangulation by sketching Computer Animation and Virtual Worlds. 20: 101-109. DOI: 10.1002/Cav.V20:2/3  0.34
2008 Low D, Abraham C, Parikh P, Mutic S, Thorstad W, Liu L, Khullar D, Apte A, Deasy J, Ju T. SU-GG-J-192: Use of Optimized Oblique Anatomical Planes for Efficient and Accurate Organ and Tumor Segmentation Medical Physics. 35: 2723-2724. DOI: 10.1118/1.2961741  0.338
2008 Abraham C, Low D, Liu L, Parikh P, Mutic S, Thorstad W, Khullar D, Apte A, Deasy J, Ju T. SU-GG-I-105: A Process to Determine Optimal Oblique Contouring Planes Medical Physics. 35: 2666-2666. DOI: 10.1118/1.2961503  0.339
2008 Abeysinghe S, Ju T, Baker ML, Chiu W. Shape modeling and matching in identifying 3D protein structures Cad Computer Aided Design. 40: 708-720. DOI: 10.1016/J.Cad.2008.01.013  0.346
2007 Ju T, Baker ML, Chiu W. Computing a family of skeletons of volumetric models for shape description. Computer Aided Design. 39: 352-360. PMID 18449328 DOI: 10.1016/J.Cad.2007.02.006  0.385
2007 Bello M, Ju T, Carson J, Warren J, Chiu W, Kakadiaris IA. Learning-based segmentation framework for tissue images containing gene expression data. Ieee Transactions On Medical Imaging. 26: 728-44. PMID 17518066 DOI: 10.1109/Tmi.2007.895462  0.559
2007 Zhou QY, Ju T, Hu SM. Topology repair of solid models using skeletons. Ieee Transactions On Visualization and Computer Graphics. 13: 675-85. PMID 17495328 DOI: 10.1109/Tvcg.2007.1015  0.371
2007 Schaefer S, Ju T, Warren J. Manifold dual contouring. Ieee Transactions On Visualization and Computer Graphics. 13: 610-9. PMID 17356225 DOI: 10.1109/Tvcg.2007.1012  0.651
2007 Simpson T, Deasy J, Apte A, Ju T. TH-D-M100E-09: Accurate Interpolation of 3D Structures and Doses Using Smoothed Surface Meshes Medical Physics. 34: 2644-2644. DOI: 10.1118/1.2761736  0.366
2007 Liu L, Low D, Parikh P, Hubenschmidt J, Mutic S, Apte A, Zhao T, Deasy J, Ju T. SU-FF-J-118: A Method for Defining Segmentation Surfaces Using Nonparallel Contours Medical Physics. 34: 2395-2395. DOI: 10.1118/1.2760623  0.402
2007 Xu K, Gao Y, Li Y, Ju T, Hu S. Real-time homogenous translucent material editing Computer Graphics Forum. 26: 545-552. DOI: 10.1111/J.1467-8659.2007.01077.X  0.308
2007 Ju T, Liepa P, Warren J. A general geometric construction of coordinates in a convex simplicial polytope Computer Aided Geometric Design. 24: 161-178. DOI: 10.1016/J.Cagd.2006.12.001  0.55
2007 Schaefer S, Ju T, Warren J. A unified, integral construction for coordinates over closed curves Computer Aided Geometric Design. 24: 481-493. DOI: 10.1016/J.Cagd.2006.06.005  0.637
2006 Ju T, Warren J, Carson J, Bello M, Kakadiaris I, Chiu W, Thaller C, Eichele G. 3D volume reconstruction of a mouse brain from histological sections using warp filtering. Journal of Neuroscience Methods. 156: 84-100. PMID 16580732 DOI: 10.1016/J.Jneumeth.2006.02.020  0.556
2005 Bello M, Ju T, Warren J, Carson J, Chiu W, Thaller C, Eichele G, Kakadiaris IA. Hybrid segmentation framework for tissue images containing gene expression data. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 254-61. PMID 16685853 DOI: 10.1007/11566465_32  0.512
2005 Carson JP, Ju T, Lu HC, Thaller C, Xu M, Pallas SL, Crair MC, Warren J, Chiu W, Eichele G. A digital atlas to characterize the mouse brain transcriptome. Plos Computational Biology. 1: e41. PMID 16184189 DOI: 10.1371/Journal.Pcbi.0010041  0.542
2005 Ju T, Schaefer S, Warren J. Mean value coordinates for closed triangular meshes Acm Transactions On Graphics. 24: 561-566. DOI: 10.1145/1073204.1073229  0.631
2005 Ju T, Warren J, Carson J, Eichele G, Thaller C, Chiu W, Bello M, Kakadiaris I. Building 3D surface networks from 2D curve networks with application to anatomical modeling The Visual Computer. 21: 764-773. DOI: 10.1007/S00371-005-0321-3  0.561
2004 Carson JP, Ju T, Thaller C, Warren J, Bello M, Kakadiaris I, Chiu W, Eichele G. Automated characterization of gene expression patterns with an atlas of the mouse brain. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2917-20. PMID 17270888 DOI: 10.1109/IEMBS.2004.1403829  0.491
2004 Ju T, Schaefer S, Goldman R. Recursive turtle programs and iterated affine transformations Computers and Graphics (Pergamon). 28: 991-1004. DOI: 10.1016/J.Cag.2004.08.016  0.527
2004 Goldman R, Schaefer S, Ju T. Turtle geometry in computer graphics and computer-aided design Cad Computer Aided Design. 36: 1471-1482. DOI: 10.1016/J.Cad.2003.10.005  0.512
2003 Ju T, Warren J, Eichele G, Thaller C, Chiu W, Carson J. A geometric database for gene expression data. Symposium On Geometry Processing : [Proceedings] / Sponsored by the Eurographics Association in Cooperation With Acm Siggraph. Symposium On Geometry Processing. 2003: 166-176. PMID 20631855  0.524
2003 Ju T, Schaefer S, Warren J. Convex contouring of volumetric data The Visual Computer. 19: 513-525. DOI: 10.1007/S00371-003-0216-0  0.641
2001 Hu S, Li Y, Ju T, Zhu X. Modifying the shape of NURBS surfaces with geometric constraints Computer-Aided Design. 33: 903-912. DOI: 10.1016/S0010-4485(00)00115-9  0.321
2001 Hu S, Tong R, Ju T, Sun J. Approximate merging of a pair of Bézier curves Computer-Aided Design. 33: 125-136. DOI: 10.1016/S0010-4485(00)00083-X  0.331
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