| Year |
Citation |
Score |
| 2020 |
Zheng L, Min H, Chen Y, Keloth V, Geller J, Perl Y, Hripcsak G. Outlier concepts auditing methodology for a large family of biomedical ontologies. Bmc Medical Informatics and Decision Making. 20: 296. PMID 33319713 DOI: 10.1186/s12911-020-01311-x |
0.58 |
|
| 2020 |
Zheng L, Chen Y, Min H, Hildebrand PL, Liu H, Halper M, Geller J, de Coronado S, Perl Y. Missing lateral relationships in top-level concepts of an ontology. Bmc Medical Informatics and Decision Making. 20: 305. PMID 33319709 DOI: 10.1186/s12911-020-01319-3 |
0.598 |
|
| 2020 |
Zheng L, He Z, Wei D, Keloth V, Fan JW, Lindemann L, Zhu X, Cimino JJ, Perl Y. A review of auditing techniques for the Unified Medical Language System. Journal of the American Medical Informatics Association : Jamia. PMID 32766692 DOI: 10.1093/Jamia/Ocaa108 |
0.341 |
|
| 2019 |
Yumak H, Zheng L, Chen L, Halper M, Perl Y, Owen G. Quality assurance of complex ChEBI concepts based on number of relationship types Applied Ontology. 14: 199-214. DOI: 10.3233/Ao-190211 |
0.322 |
|
| 2018 |
Zheng L, Chen Y, Elhanan G, Perl Y, Geller J, Ochs C. Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies. Journal of Biomedical Informatics. PMID 29852316 DOI: 10.1016/J.Jbi.2018.05.015 |
0.41 |
|
| 2017 |
He Z, Perl Y, Elhanan G, Chen Y, Geller J, Bian J. Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2017: 1262-1269. PMID 29375930 DOI: 10.1109/BIBM.2017.8217840 |
0.363 |
|
| 2017 |
Halper M, Perl Y, Ochs C, Zheng L. Taxonomy-Based Approaches to Quality Assurance of Ontologies. Journal of Healthcare Engineering. 2017: 3495723. PMID 29158885 DOI: 10.1155/2017/3495723 |
0.381 |
|
| 2017 |
Zheng L, Yumak H, Chen L, Ochs C, Geller J, Kapusnik-Uner J, Perl Y. Quality Assurance of Chemical Ingredient Classification for the National Drug File - Reference Terminology. Journal of Biomedical Informatics. PMID 28723580 DOI: 10.1016/J.Jbi.2017.07.013 |
0.385 |
|
| 2017 |
Ochs C, Perl Y, Geller J, Arabandi S, Tudorache T, Musen MA. An Empirical Analysis of Ontology Reuse in BioPortal. Journal of Biomedical Informatics. PMID 28583809 DOI: 10.1016/J.Jbi.2017.05.021 |
0.337 |
|
| 2017 |
Min H, Zheng L, Perl Y, Halper M, De Coronado S, Ochs C. Relating Complexity and Error Rates of Ontology Concepts. More Complex NCIt Concepts Have More Errors. Methods of Information in Medicine. PMID 28244549 DOI: 10.3414/Me16-01-0085 |
0.584 |
|
| 2017 |
Ochs C, Case JT, Perl Y. Analyzing Structural Changes in SNOMED CT's Bacterial Infectious Diseases Using a Visual Semantic Delta. Journal of Biomedical Informatics. PMID 28215561 DOI: 10.1016/J.Jbi.2017.02.006 |
0.34 |
|
| 2017 |
Zheng L, Min H, Chen Y, Xu J, Geller J, Perl Y. Auditing National Cancer Institute thesaurus neoplasm concepts in groups of high error concentration Applied Ontology. 12: 113-130. DOI: 10.3233/Ao-170179 |
0.53 |
|
| 2016 |
Perl Y, Geller J, Halper M, Ochs C, Zheng L, Kapusnik-Uner J. Introducing the Big Knowledge to Use (BK2U) challenge. Annals of the New York Academy of Sciences. PMID 27750400 DOI: 10.1111/Nyas.13225 |
0.308 |
|
| 2016 |
Ochs C, Geller J, Perl Y, Musen MA. A Unified Software Framework for Deriving, Visualizing, and Exploring Abstraction Networks for Ontologies. Journal of Biomedical Informatics. PMID 27345947 DOI: 10.1016/J.Jbi.2016.06.008 |
0.426 |
|
| 2016 |
Ochs C, Perl Y, Halper M, Geller J, Lomax J. Quality assurance of the gene ontology using abstraction networks. Journal of Bioinformatics and Computational Biology. 14: 1642001. PMID 27301779 DOI: 10.1142/S0219720016420014 |
0.433 |
|
| 2016 |
Ochs C, He Z, Zheng L, Geller J, Perl Y, Hripcsak G, Musen MA. Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. Journal of Biomedical Informatics. PMID 26988001 DOI: 10.1016/J.Jbi.2016.03.007 |
0.387 |
|
| 2015 |
Wei D, Helen Gu H, Perl Y, Halper M, Ochs C, Elhanan G, Chen Y. Structural measures to track the evolution of SNOMED CT hierarchies. Journal of Biomedical Informatics. PMID 26260003 DOI: 10.1016/J.Jbi.2015.08.001 |
0.315 |
|
| 2015 |
Ochs C, Perl Y, Geller J, Haendel M, Brush M, Arabandi S, Tu S. Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. Journal of Biomedical Informatics. PMID 26048076 DOI: 10.1016/J.Jbi.2015.05.018 |
0.413 |
|
| 2015 |
Halper M, Gu H, Perl Y, Ochs C. Abstraction networks for terminologies: Supporting management of "big knowledge". Artificial Intelligence in Medicine. 64: 1-16. PMID 25890687 DOI: 10.1016/J.Artmed.2015.03.005 |
0.413 |
|
| 2015 |
Ochs C, Geller J, Perl Y, Chen Y, Xu J, Min H, Case JT, Wei Z. Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. Journal of the American Medical Informatics Association : Jamia. 22: 507-18. PMID 25336594 DOI: 10.1136/Amiajnl-2014-003151 |
0.564 |
|
| 2015 |
Ochs C, Geller J, Perl Y, Chen Y, Agrawal A, Case JT, Hripcsak G. A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships. Journal of the American Medical Informatics Association : Jamia. 22: 628-39. PMID 25332354 DOI: 10.1136/Amiajnl-2014-003173 |
0.395 |
|
| 2014 |
He Z, Morrey CP, Perl Y, Elhanan G, Chen L, Chen Y, Geller J. Sculpting the UMLS Refined Semantic Network. Online Journal of Public Health Informatics. 6: e181. PMID 25422719 DOI: 10.5210/Ojphi.V6I2.5412 |
0.424 |
|
| 2013 |
Ochs C, Perl Y, Geller J, Halper M, Gu H, Chen Y, Elhanan G. Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2013: 1071-80. PMID 24551393 |
0.309 |
|
| 2013 |
Geller J, He Z, Perl Y, Morrey CP, Xu J. Rule-based support system for multiple UMLS semantic type assignments. Journal of Biomedical Informatics. 46: 97-110. PMID 23041716 DOI: 10.1016/J.Jbi.2012.09.007 |
0.386 |
|
| 2012 |
Ochs C, Agrawal A, Perl Y, Halper M, Tu SW, Carini S, Sim I, Noy N, Musen M, Geller J. Deriving an abstraction network to support quality assurance in OCRe. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 681-9. PMID 23304341 |
0.343 |
|
| 2012 |
Gu HH, Elhanan G, Perl Y, Hripcsak G, Cimino JJ, Xu J, Chen Y, Geller J, Paul Morrey C. A study of terminology auditors' performance for UMLS semantic type assignments. Journal of Biomedical Informatics. 45: 1042-8. PMID 22687822 DOI: 10.1016/J.Jbi.2012.05.006 |
0.384 |
|
| 2012 |
Morrey CP, Perl Y, Halper M, Chen L, Gu HH. A chemical specialty semantic network for the Unified Medical Language System. Journal of Cheminformatics. 4: 9. PMID 22577759 DOI: 10.1186/1758-2946-4-9 |
0.438 |
|
| 2012 |
Chen Y, Gu H, Perl Y, Geller J. Overcoming an obstacle in expanding a UMLS semantic type extent. Journal of Biomedical Informatics. 45: 61-70. PMID 21925287 DOI: 10.1016/J.Jbi.2011.08.021 |
0.409 |
|
| 2012 |
Wang Y, Halper M, Wei D, Gu H, Perl Y, Xu J, Elhanan G, Chen Y, Spackman KA, Case JT, Hripcsak G. Auditing complex concepts of SNOMED using a refined hierarchical abstraction network. Journal of Biomedical Informatics. 45: 1-14. PMID 21907827 DOI: 10.1016/J.Jbi.2011.08.016 |
0.438 |
|
| 2012 |
Wang Y, Halper M, Wei D, Perl Y, Geller J. Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. Journal of Biomedical Informatics. 45: 15-29. PMID 21878396 DOI: 10.1016/J.Jbi.2011.08.013 |
0.397 |
|
| 2011 |
Morrey CP, Chen L, Halper M, Perl Y. Resolution of redundant semantic type assignments for organic chemicals in the UMLS. Artificial Intelligence in Medicine. 52: 141-51. PMID 21646001 DOI: 10.1016/J.Artmed.2011.05.003 |
0.363 |
|
| 2010 |
Elhanan G, Huang KC, Perl Y. Source authenticity in the UMLS--a case study of the Minimal Standard Terminology. Journal of Biomedical Informatics. 43: 988-97. PMID 20692366 DOI: 10.1016/J.Jbi.2010.07.008 |
0.34 |
|
| 2009 |
Chen Y, Gu H, Perl Y, Halper M, Xu J. Expanding the extent of a UMLS semantic type via group neighborhood auditing. Journal of the American Medical Informatics Association : Jamia. 16: 746-57. PMID 19567802 DOI: 10.1197/Jamia.M2951 |
0.371 |
|
| 2009 |
Morrey CP, Geller J, Halper M, Perl Y. The Neighborhood Auditing Tool: a hybrid interface for auditing the UMLS. Journal of Biomedical Informatics. 42: 468-89. PMID 19475725 DOI: 10.1016/J.Jbi.2009.01.006 |
0.418 |
|
| 2009 |
Huang KC, Geller J, Halper M, Perl Y, Xu J. Using WordNet synonym substitution to enhance UMLS source integration. Artificial Intelligence in Medicine. 46: 97-109. PMID 19117739 DOI: 10.1016/J.Artmed.2008.11.008 |
0.324 |
|
| 2009 |
Chen L, Morrey CP, Gu H, Halper M, Perl Y. Modeling multi-typed structurally viewed chemicals with the UMLS Refined Semantic Network. Journal of the American Medical Informatics Association : Jamia. 16: 116-31. PMID 18952946 DOI: 10.1197/Jamia.M2604 |
0.373 |
|
| 2009 |
Chen Y, Gu HH, Perl Y, Geller J. Structural group-based auditing of missing hierarchical relationships in UMLS. Journal of Biomedical Informatics. 42: 452-67. PMID 18824248 DOI: 10.1016/J.Jbi.2008.08.006 |
0.422 |
|
| 2009 |
Chen Y, Gu HH, Perl Y, Geller J, Halper M. Structural group auditing of a UMLS semantic type's extent. Journal of Biomedical Informatics. 42: 41-52. PMID 18619563 DOI: 10.1016/J.Jbi.2008.06.001 |
0.43 |
|
| 2008 |
Min H, Cohen B, Halper M, Oren M, Perl Y. Detecting role errors in the gene hierarchy of the NCI Thesaurus. Cancer Informatics. 6: 293-313. PMID 19221606 DOI: 10.4137/Cin.S440 |
0.583 |
|
| 2008 |
Cohen B, Oren M, Min H, Perl Y, Halper M. Automated comparative auditing of NCIT genomic roles using NCBI. Journal of Biomedical Informatics. 41: 904-13. PMID 18486558 DOI: 10.1016/J.Jbi.2008.03.010 |
0.566 |
|
| 2008 |
Chen Y, Perl Y, Geller J, Hripcsak G, Zhang L. Comparing and consolidating two heuristic metaschemas. Journal of Biomedical Informatics. 41: 293-317. PMID 18158275 DOI: 10.1016/J.Jbi.2007.11.001 |
0.407 |
|
| 2007 |
Halper M, Wang Y, Min H, Chen Y, Hripcsak G, Perl Y, Spackman KA. Analysis of error concentrations in SNOMED. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 314-8. PMID 18693849 |
0.57 |
|
| 2007 |
Wang Y, Halper M, Min H, Perl Y, Chen Y, Spackman KA. Structural methodologies for auditing SNOMED. Journal of Biomedical Informatics. 40: 561-81. PMID 17276736 DOI: 10.1016/J.Jbi.2006.12.003 |
0.633 |
|
| 2006 |
Min H, Perl Y, Chen Y, Halper M, Geller J, Wang Y. Auditing as part of the terminology design life cycle. Journal of the American Medical Informatics Association : Jamia. 13: 676-90. PMID 16929044 DOI: 10.1197/Jamia.M2036 |
0.573 |
|
| 2005 |
Zhang L, Halper M, Perl Y, Geller J, Cimino JJ. Relationship structures and semantic type assignments of the UMLS Enriched Semantic Network. Journal of the American Medical Informatics Association : Jamia. 12: 657-66. PMID 16049233 DOI: 10.1197/Jamia.M1605 |
0.424 |
|
| 2005 |
Zhang L, Hripcsak G, Perl Y, Halper M, Geller J. An expert study evaluating the UMLS lexical metaschema. Artificial Intelligence in Medicine. 34: 219-33. PMID 15996860 DOI: 10.1016/J.Artmed.2005.01.002 |
0.411 |
|
| 2005 |
Zhang L, Perl Y, Halper M, Geller J, Hripcsak G. A lexical metaschema for the UMLS semantic network. Artificial Intelligence in Medicine. 33: 41-59. PMID 15617981 DOI: 10.1016/J.Artmed.2004.06.002 |
0.406 |
|
| 2004 |
Gu H, Perl Y, Elhanan G, Min H, Zhang L, Peng Y. Auditing concept categorizations in the UMLS. Artificial Intelligence in Medicine. 31: 29-44. PMID 15182845 DOI: 10.1016/J.Artmed.2004.02.002 |
0.637 |
|
| 2004 |
Zhang L, Perl Y, Halper M, Geller J, Cimino JJ. An enriched unified medical language system semantic network with a multiple subsumption hierarchy. Journal of the American Medical Informatics Association : Jamia. 11: 195-206. PMID 14764611 DOI: 10.1197/Jamia.M1269 |
0.405 |
|
| 2004 |
Geller J, Perl Y, Lee J. Editorial: Ontology Challenges: A Thumbnail Historical Perspective Knowledge and Information Systems. 6: 375-379. DOI: 10.1007/S10115-003-0134-5 |
0.413 |
|
| 2004 |
Gu H, Perl Y, Geller J, Neuhold EJ. Contextual Partitioning for Comprehension of OODB Schemas Knowledge and Information Systems. 6: 315-344. DOI: 10.1007/S10115-003-0102-0 |
0.414 |
|
| 2003 |
Cimino JJ, Min H, Perl Y. Consistency across the hierarchies of the UMLS Semantic Network and Metathesaurus. Journal of Biomedical Informatics. 36: 450-61. PMID 14759818 DOI: 10.1016/J.Jbi.2003.11.001 |
0.581 |
|
| 2003 |
Zhang L, Perl Y, Halper M, Geller J. Designing metaschemas for the UMLS enriched semantic network. Journal of Biomedical Informatics. 36: 433-49. PMID 14759817 DOI: 10.1016/J.Jbi.2003.11.006 |
0.442 |
|
| 2003 |
Halper M, Liu LM, Geller J, Perl Y. Frameworks for incorporating semantic relationships into object-oriented database systems Concurrency Computation Practice and Experience. 15: 1337-1362. DOI: 10.1002/Cpe.733 |
0.37 |
|
| 2003 |
Liu LM, Geller J, Perl Y. Enhancing OODB semantics to support browsing in an OODB vacabulary representation Concurrency Computation Practice and Experience. 15: 845-869. DOI: 10.1002/Cpe.732 |
0.417 |
|
| 2002 |
Perl Y, Chen Z, Halper M, Geller J, Zhang L, Peng Y. The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network. Journal of Biomedical Informatics. 35: 194-212. PMID 12669983 DOI: 10.1016/S1532-0464(02)00528-2 |
0.45 |
|
| 2002 |
Zhang L, Perl Y, Halper MH, Geller J, Cimino JJ. Enriching the structure of the UMLS semantic network. Proceedings / Amia ... Annual Symposium. Amia Symposium. 939-43. PMID 12463963 |
0.303 |
|
| 2002 |
Gu HH, Min H, Peng Y, Zhang L, Perl Y. Using the metaschema to audit UMLS classification errors. Proceedings / Amia ... Annual Symposium. Amia Symposium. 310-4. PMID 12463837 |
0.599 |
|
| 2002 |
Geller J, Perl Y, Halper M, Chen Z, Gu H. Evaluation and application of a semantic network partition. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 6: 109-15. PMID 12075664 DOI: 10.1109/TITB.2002.1006297 |
0.334 |
|
| 2002 |
Chen Z, Perl Y, Halper M, Geller J, Gu H. Partitioning the UMLS semantic network. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 6: 102-8. PMID 12075663 DOI: 10.1109/TITB.2002.1006296 |
0.308 |
|
| 2002 |
Liu LM, Halper M, Geller J, Perl Y. Using OODB modeling to partition a vocabulary into structurally and semantically uniform concept groups Ieee Transactions On Knowledge and Data Engineering. 14: 850-866. DOI: 10.1109/Tkde.2002.1019218 |
0.441 |
|
| 2001 |
Halper MH, Chen Z, Geller J, Perl Y. A metaschema of the UMLS based on a partition of its semantic network Proceedings / Amia ... Annual Symposium. Amia Symposium. 234-238. PMID 11825187 |
0.348 |
|
| 2001 |
Gu H, Perl Y, Halper M, Geller J, Kuo E, Cimino JJ. Partitioning an object-oriented terminology schema Methods of Information in Medicine. 40: 204-212. PMID 11501633 DOI: 10.1055/S-0038-1634167 |
0.321 |
|
| 2000 |
Gu H, Perl Y, Geller J, Halper M, Liu LM, Cimino JJ. Representing the UMLS as an object-oriented database: Modeling issues and advantages Journal of the American Medical Informatics Association. 7: 66-80. PMID 10641964 DOI: 10.1136/Jamia.2000.0070066 |
0.436 |
|
| 2000 |
Chen Z, Halper M, Geller J, Perl Y. A structural partition of the Unified Medical Language System's Semantic Network Proceedings of the Ieee/Embs Region 8 International Conference On Information Technology Applications in Biomedicine, Itab. 296-301. |
0.312 |
|
| 1999 |
Gu H, Perl Y, Geller J, Halper M, Liu LM, Cimino JJ. Modeling the UMLS using an OODB Proceedings / Amia ... Annual Symposium. Amia Symposium. 82-86. PMID 10566325 |
0.327 |
|
| 1999 |
Gu H, Halper M, Geller J, Perl Y. Benefits of an object-oriented database representation for controlled medical terminologies Journal of the American Medical Informatics Association. 6: 283-303. PMID 10428002 DOI: 10.1136/Jamia.1999.0060283 |
0.393 |
|
| 1999 |
Gu H, Perl Y, Geller J, Halper M, Singh M. A methodology for partitioning a vocabulary hierarchy into trees Artificial Intelligence in Medicine. 15: 77-98. PMID 9930617 DOI: 10.1016/S0933-3657(98)00046-3 |
0.354 |
|
| 1999 |
Liu LM, Halper M, Geller J, Perl Y. Controlled vocabularies in OODBs: Modeling issues and implementation Distributed and Parallel Databases. 7: 37-65. DOI: 10.1023/A:1008682210559 |
0.4 |
|
| 1998 |
Becker RI, Nassimi D, Perl Y. The New Class of g-Chain Periodic Sorters Journal of Parallel and Distributed Computing. 54: 206-222. DOI: 10.1006/Jpdc.1998.1485 |
0.354 |
|
| 1993 |
Geller J, Perl Y, Cannata P, Sheth A, Neuhold E. Structural integration: Concepts and case study Journal of Systems Integration. 3: 133-161. DOI: 10.1007/Bf01974954 |
0.346 |
|
| 1992 |
Geller J, Perl Y, Neuhold E, Sheth A. Structural schema integration with full and partial correspondence using the dual model Information Systems. 17: 443-464. DOI: 10.1016/0306-4379(92)90025-I |
0.344 |
|
| 1989 |
Dowd M, Perl Y, Rudolph L, Saks M. The Periodic Balanced Sorting Network Journal of the Acm (Jacm). 36: 738-757. DOI: 10.1145/76359.76362 |
0.335 |
|
| 1989 |
Perl Y. Better understanding of batcher's merging networks Discrete Applied Mathematics. 25: 257-271. DOI: 10.1016/0166-218X(89)90004-8 |
0.353 |
|
| 1984 |
Ronen D, Perl Y. HEURISTICS FOR FINDING A MAXIMUM NUMBER OF DISJOINT BOUNDED PATHS Networks. 14: 531-544. DOI: 10.1002/Net.3230140405 |
0.312 |
|
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