| Year |
Citation |
Score |
| 2009 |
Gubser SS, Nellore A. Ground states of holographic superconductors Physical Review D - Particles, Fields, Gravitation and Cosmology. 80. DOI: 10.1103/Physrevd.80.105007 |
0.558 |
|
| 2009 |
Cherman A, Nellore A. Universal relations of transport coefficients from holography Physical Review D - Particles, Fields, Gravitation and Cosmology. 80. DOI: 10.1103/Physrevd.80.066006 |
0.318 |
|
| 2009 |
Cherman A, Cohen TD, Nellore A. Bound on the speed of sound from holography Physical Review D - Particles, Fields, Gravitation and Cosmology. 80. DOI: 10.1103/Physrevd.80.066003 |
0.303 |
|
| 2009 |
Gubser SS, Nellore A. Low-temperature behavior of the abelian higgs model in anti-de switter space Journal of High Energy Physics. 2009. DOI: 10.1088/1126-6708/2009/04/008 |
0.62 |
|
| 2008 |
Gubser SS, Nellore A, Pufu SS, Rocha FD. Thermodynamics and bulk viscosity of approximate black hole duals to finite temperature quantum chromodynamics. Physical Review Letters. 101: 131601. PMID 18851435 DOI: 10.1103/Physrevlett.101.131601 |
0.642 |
|
| 2008 |
Gubser SS, Nellore A, Pufu SS, Rocha FD. Thermodynamics and bulk viscosity of approximate black hole duals to finite temperature quantum chromodynamics Physical Review Letters. 101. DOI: 10.1103/PhysRevLett.101.131601 |
0.645 |
|
| 2008 |
Gubser SS, Nellore A. Mimicking the QCD equation of state with a dual black hole Physical Review D - Particles, Fields, Gravitation and Cosmology. 78. DOI: 10.1103/Physrevd.78.086007 |
0.618 |
|
| 2004 |
Cherman A, Cohen TD, Nellore A. Quantization of exotic states in SU(3) soliton models: A solvable quantum mechanical analog Physical Review D - Particles, Fields, Gravitation and Cosmology. 70: 096003-1-096003-8. DOI: 10.1103/Physrevd.70.096003 |
0.374 |
|
| 2004 |
Cohen TD, Dakin DC, Nellore A, Lebed RF. Excited baryon decay widths in large Nc QCD Physical Review D. 69. DOI: 10.1103/Physrevd.69.056001 |
0.301 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2017 |
Collado-Torres L, Nellore A, Jaffe AE. recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor. F1000research. 6: 1558. PMID 29043067 DOI: 10.12688/F1000Research.12223.1 |
0.272 |
|
| 2018 |
Langmead B, Nellore A. Cloud computing for genomic data analysis and collaboration. Nature Reviews. Genetics. PMID 29379135 DOI: 10.1038/Nrg.2017.113 |
0.267 |
|
| 2016 |
Nellore A, Jaffe AE, Fortin JP, Alquicira-Hernández J, Collado-Torres L, Wang S, Phillips Iii RA, Karbhari N, Hansen KD, Langmead B, Leek JT. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive. Genome Biology. 17: 266. PMID 28038678 DOI: 10.1186/S13059-016-1118-6 |
0.256 |
|
| 2003 |
Oskam G, Nellore A, Penn RL, Searson PC. The growth kinetics of TiO2 nanoparticles from titanium(IV) alkoxide at high water/titanium ratio Journal of Physical Chemistry B. 107: 1734-1738. DOI: 10.1021/Jp021237F |
0.255 |
|
| 2016 |
Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE. Flexible expressed region analysis for RNA-seq with derfinder. Nucleic Acids Research. PMID 27694310 DOI: 10.1093/Nar/Gkw852 |
0.253 |
|
| 2004 |
Cohen TD, Dakin DC, Nellore A, Lebed RF. Pion-nucleon scattering relations at next-to-leading order in 1/N c Physical Review D - Particles, Fields, Gravitation and Cosmology. 70: 056004-1-056004-7. DOI: 10.1103/Physrevd.70.056004 |
0.252 |
|
| 2013 |
Ramos AD, Diaz A, Nellore A, Delgado RN, Park KY, Gonzales-Roybal G, Oldham MC, Song JS, Lim DA. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. Cell Stem Cell. 12: 616-28. PMID 23583100 DOI: 10.1016/J.Stem.2013.03.003 |
0.247 |
|
| 2020 |
Ling JP, Wilks C, Charles R, Leavey PJ, Ghosh D, Jiang L, Santiago CP, Pang B, Venkataraman A, Clark BS, Nellore A, Langmead B, Blackshaw S. ASCOT identifies key regulators of neuronal subtype-specific splicing. Nature Communications. 11: 137. PMID 31919425 DOI: 10.1038/S41467-019-14020-5 |
0.245 |
|
| 2017 |
Jaffe AE, Tao R, Norris AL, Kealhofer M, Nellore A, Shin JH, Kim D, Jia Y, Hyde TM, Kleinman JE, Straub RE, Leek JT, Weinberger DR. qSVA framework for RNA quality correction in differential expression analysis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28634288 DOI: 10.1073/Pnas.1617384114 |
0.244 |
|
| 2012 |
Nellore A, Bobkov K, Howe E, Pankov A, Diaz A, Song JS. NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data. Frontiers in Genetics. 3: 320. PMID 23335939 DOI: 10.3389/Fgene.2012.00320 |
0.243 |
|
| 2016 |
Nellore A, Collado-Torres L, Jaffe AE, Alquicira-Hernández J, Wilks C, Pritt J, Morton J, Leek JT, Langmead B. Rail-RNA: Scalable analysis of RNA-seq splicing and coverage. Bioinformatics (Oxford, England). PMID 27592709 DOI: 10.1093/Bioinformatics/Btw575 |
0.239 |
|
| 2018 |
Langmead B, Nellore A. Cloud computing for genomic data analysis and collaboration. Nature Reviews. Genetics. PMID 29430012 DOI: 10.1038/Nrg.2018.8 |
0.238 |
|
| 2016 |
Nellore A, Wilks C, Hansen KD, Leek JT, Langmead B. Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinformatics (Oxford, England). PMID 27153614 DOI: 10.1093/Bioinformatics/Btw177 |
0.237 |
|
| 2019 |
Wood MA, Nguyen A, Struck A, Ellrott K, Nellore A, Thompson RF. neoepiscope improves neoepitope prediction with multi-variant phasing. Bioinformatics (Oxford, England). PMID 31424527 DOI: 10.1093/Bioinformatics/Btz653 |
0.236 |
|
| 2017 |
Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT. Reproducible RNA-seq analysis using recount2. Nature Biotechnology. 35: 319-321. PMID 28398307 DOI: 10.1038/Nbt.3838 |
0.231 |
|
| 2017 |
Torres LC, Nellore A, Kammers K, Ellis S, Taub M, Hansen K, Jaffe A, Leek J. 694. RNA-Seq Samples Beyond the Known Transcriptome with Derfinder Available via Recount Biological Psychiatry. 81. DOI: 10.1016/J.Biopsych.2017.02.761 |
0.231 |
|
| 2017 |
Wilks C, Gaddipati P, Nellore A, Langmead B. Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples. Bioinformatics (Oxford, England). PMID 28968689 DOI: 10.1093/Bioinformatics/Btx547 |
0.222 |
|
| 2015 |
Nellore A, Ward R. Recovery guarantees for exemplar-based clustering Information and Computation. 245: 165-180. DOI: 10.1016/J.Ic.2015.09.002 |
0.222 |
|
| 2012 |
Diaz A, Nellore A, Song JS. CHANCE: comprehensive software for quality control and validation of ChIP-seq data. Genome Biology. 13: R98. PMID 23068444 DOI: 10.1186/Gb-2012-13-10-R98 |
0.218 |
|
| 2018 |
Byrne RM, Ruhl R, Lanciault C, Anand S, Nellore A, Tsikitis VL. Age-related differences in gene expression in colorectal cancer (CRC). Journal of Clinical Oncology. 36: 654-654. DOI: 10.1200/Jco.2018.36.4_Suppl.654 |
0.216 |
|
| 2020 |
Nguyen A, David JK, Maden SK, Wood MA, Weeder BR, Nellore A, Thompson RF. Human leukocyte antigen susceptibility map for SARS-CoV-2. Journal of Virology. PMID 32303592 DOI: 10.1128/Jvi.00510-20 |
0.21 |
|
| 2020 |
Wood MA, Weeder BR, David JK, Nellore A, Thompson RF. Burden of tumor mutations, neoepitopes, and other variants are weak predictors of cancer immunotherapy response and overall survival. Genome Medicine. 12: 33. PMID 32228719 DOI: 10.1186/S13073-020-00729-2 |
0.203 |
|
| 2018 |
Wood MA, Paralkar M, Paralkar MP, Nguyen A, Struck AJ, Ellrott K, Margolin A, Nellore A, Thompson RF. Population-level distribution and putative immunogenicity of cancer neoepitopes. Bmc Cancer. 18: 414. PMID 29653567 DOI: 10.1186/S12885-018-4325-6 |
0.2 |
|
| 2013 |
Haq R, Shoag J, Andreu-Perez P, Yokoyama S, Edelman H, Rowe GC, Frederick DT, Hurley AD, Nellore A, Kung AL, Wargo JA, Song JS, Fisher DE, Arany Z, Widlund HR. Oncogenic BRAF regulates oxidative metabolism via PGC1α and MITF. Cancer Cell. 23: 302-15. PMID 23477830 DOI: 10.1016/J.Ccr.2013.02.003 |
0.191 |
|
| 2019 |
Wood MA, Nellore A, Thompson RF. Tumor Mutation Burden-From Doubts to Concerns. Jama Oncology. PMID 31647502 DOI: 10.1001/Jamaoncol.2019.4138 |
0.176 |
|
| 1999 |
Natarajan A, Nellore A, Searson PC. Theory of potential modulated microwave reflectivity at semiconductor surfaces Journal of Applied Physics. 85: 1631-1636. |
0.128 |
|
| 2021 |
Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B. recount3: summaries and queries for large-scale RNA-seq expression and splicing. Genome Biology. 22: 323. PMID 34844637 DOI: 10.1186/s13059-021-02533-6 |
0.127 |
|
| 2020 |
David JK, Maden SK, Weeder BR, Thompson RF, Nellore A. Putatively cancer-specific exon-exon junctions are shared across patients and present in developmental and other non-cancer cells. Nar Cancer. 2: zcaa001. PMID 34316681 DOI: 10.1093/narcan/zcaa001 |
0.095 |
|
| 2022 |
David JK, Maden SK, Wood MA, Thompson RF, Nellore A. Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads. Genome Biology. 23: 240. PMID 36369064 DOI: 10.1186/s13059-022-02789-6 |
0.09 |
|
| 2021 |
Maden SK, Thompson RF, Hansen KD, Nellore A. Human methylome variation across Infinium 450K data on the Gene Expression Omnibus. Nar Genomics and Bioinformatics. 3: lqab025. PMID 33937763 DOI: 10.1093/nargab/lqab025 |
0.07 |
|
| 2023 |
Maden SK, Walsh B, Ellrott K, Hansen KD, Thompson RF, Nellore A. recountmethylation enables flexible analysis of public blood DNA methylation array data. Bioinformatics Advances. 3: vbad020. PMID 36874953 DOI: 10.1093/bioadv/vbad020 |
0.064 |
|
| 2022 |
Nguyen A, Yusufali T, Hollenbach JA, Nellore A, Thompson RF. Minimal observed impact of HLA genotype on hospitalization and severity of SARS-CoV-2 infection. Hla. PMID 35118818 DOI: 10.1111/tan.14574 |
0.052 |
|
| 2020 |
Narayanan GA, Nellore A, Tran J, Worley AH, Meermeier EW, Karamooz E, Huber ME, Kurapova R, Tafesse FG, Harriff MJ, Lewinsohn DM. Alternative splicing of MR1 regulates antigen presentation to MAIT cells. Scientific Reports. 10: 15429. PMID 32963314 DOI: 10.1038/s41598-020-72394-9 |
0.05 |
|
| 2015 |
Nellore A. Bioterrorism and the role of the clinical microbiology laboratory Clinical Microbiology Reviews. 29: 175-189. DOI: 10.1128/CMR.00033-15. |
0.037 |
|
| 2014 |
Nellore A, Liu B, Patsoukis N, Boussiotis VA, Li L. The cyclin dependent kinase inhibitor (R)-roscovitine mediates selective suppression of alloreactive human T cells but preserves pathogen-specific and leukemia-specific effectors Clinical Immunology. 152: 48-57. PMID 24631965 DOI: 10.1016/j.clim.2014.02.015 |
0.035 |
|
| 2021 |
Weeder BR, Wood MA, Li E, Nellore A, Thompson RF. pepsickle rapidly and accurately predicts proteasomal cleavage sites for improved neoantigen identification. Bioinformatics (Oxford, England). PMID 34478497 DOI: 10.1093/bioinformatics/btab628 |
0.03 |
|
| 2011 |
Nellore A, Fishman JA. NK cells, innate immunity and hepatitis C infection after liver transplantation Clinical Infectious Diseases. 52: 369-377. PMID 21217184 DOI: 10.1093/cid/ciq156 |
0.024 |
|
| 2009 |
Nellore A, Paziana K, Ma C, Tsygankova OM, Wang Y, Puttaswamy K, Iqbal AU, Franks SR, Lv Y, Troxel AB, Feldman MD, Meinkoth JL, Brose MS. Loss of Rap1GAP in papillary thyroid cancer. The Journal of Clinical Endocrinology and Metabolism. 94: 1026-32. PMID 19066305 DOI: 10.1210/jc.2008-1042 |
0.023 |
|
| 2009 |
Nellore A, Fishman J. Pandemic swine flu 2009: Invited commentary Xenotransplantation. 16: 463-465. PMID 20042043 DOI: 10.1111/j.1399-3089.2009.00559.x |
0.018 |
|
| 2015 |
Locke JE, Durand C, Reed RD, MacLennan PA, Mehta S, Massie A, Nellore A, DuBay D, Segev DL. Long-Term Outcomes After Liver Transplantation Among Human Immunodeficiency Virus-Infected Recipients. Transplantation. PMID 26177090 DOI: 10.1097/Tp.0000000000000829 |
0.017 |
|
| 2015 |
Stripling J, Kumar R, Baddley JW, Nellore A, Dixon P, Howard D, Ptacek T, Lefkowitz EJ, Tallaj JA, Benjamin WH, Morrow CD, Rodriguez JM. Loss of Vancomycin-Resistant Enterococcus Fecal Dominance in an Organ Transplant Patient With Clostridium difficile Colitis After Fecal Microbiota Transplant. Open Forum Infectious Diseases. 2: ofv078. PMID 26180828 DOI: 10.1093/Ofid/Ofv078 |
0.017 |
|
| 2015 |
Nellore A, Fishman JA. The microbiome, systemic immune function, and allotransplantation Clinical Microbiology Reviews. 29: 191-199. DOI: 10.1128/CMR.00063-15 |
0.012 |
|
| 2015 |
Locke JE, Mehta S, Reed RD, MacLennan P, Massie A, Nellore A, Durand C, Segev DL. A National Study of Outcomes among HIV-Infected Kidney Transplant Recipients. Journal of the American Society of Nephrology : Jasn. PMID 25791727 DOI: 10.1681/Asn.2014070726 |
0.012 |
|
| 2013 |
Nellore A, Kotton CN. Screening strategies for tuberculosis in children with kidney disease: What is cost-effective? American Journal of Kidney Diseases. 61: 3-5. PMID 23245736 DOI: 10.1053/j.ajkd.2012.10.003 |
0.01 |
|
| 2012 |
Bumbacea D, Arend SM, Eyuboglu F, Fishman JA, Goletti D, Ison MG, Jones CE, Kampmann B, Kotton CN, Lange C, Ljungman P, Milburn H, Morris MI, Muller E, Muñoz P, ... Nellore A, et al. The risk of tuberculosis in transplant candidates and recipients: a TBNET consensus statement. The European Respiratory Journal. 40: 990-1013. PMID 22496318 DOI: 10.1183/09031936.00000712 |
0.01 |
|
| 2008 |
Gupta-Abramson V, Troxel AB, Nellore A, Puttaswamy K, Redlinger M, Ransone K, Mandel SJ, Flaherty KT, Loevner LA, O'Dwyer PJ, Brose MS. Phase II trial of sorafenib in advanced thyroid cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 26: 4714-9. PMID 18541894 DOI: 10.1200/Jco.2008.16.3279 |
0.01 |
|
| 2004 |
Nellore A, Trerotola SO. Delayed Migration of a Catheter Fragment from the Left to the Right Pulmonary Artery Journal of Vascular and Interventional Radiology. 15: 497-499. PMID 15126661 |
0.01 |
|
| Hide low-probability matches. |