| Year |
Citation |
Score |
| 2021 |
Sarkar R, Petrushenko ZM, Dawson DS, Rybenkov VV. Ycs4 Subunit of Condensin Binds DNA and Modulates the Enzyme Turnover. Biochemistry. PMID 34723504 DOI: 10.1021/acs.biochem.1c00473 |
0.45 |
|
| 2020 |
Zhao H, Bhowmik BK, Petrushenko ZM, Rybenkov VV. Alternating Dynamics of , SMC, and MksBEF in Segregation of Pseudomonas aeruginosa Chromosome. Msphere. 5. PMID 32907947 DOI: 10.1128/mSphere.00238-20 |
0.316 |
|
| 2020 |
Saha P, Sikdar S, Krishnamoorthy G, Zgurskaya HI, Rybenkov VV. Drug permeation against efflux by two transporters. Acs Infectious Diseases. PMID 32039579 DOI: 10.1021/Acsinfecdis.9B00510 |
0.307 |
|
| 2019 |
Zgurskaya HI, Rybenkov VV. Permeability barriers of Gram-negative pathogens. Annals of the New York Academy of Sciences. PMID 31165502 DOI: 10.1111/Nyas.14134 |
0.317 |
|
| 2018 |
Bhowmik BK, Clevenger AL, Zhao H, Rybenkov VV. Segregation but Not Replication of the Chromosome Terminates at . Mbio. 9. PMID 30352930 DOI: 10.1128/Mbio.01088-18 |
0.408 |
|
| 2018 |
Zhao H, Petrushenko ZM, Walker JK, Baudry J, Zgurskaya HI, Rybenkov VV. Small Molecule Condensin Inhibitors. Acs Infectious Diseases. PMID 30346684 DOI: 10.1021/Acsinfecdis.8B00222 |
0.322 |
|
| 2018 |
Cooper SJ, Krishnamoorthy G, Wolloscheck D, Walker JK, Rybenkov VV, Parks JM, Zgurskaya HI. Molecular Properties that Define the Activities of Antibiotics in Escherichia coli and Pseudomonas aeruginosa. Acs Infectious Diseases. PMID 29756762 DOI: 10.1021/Acsinfecdis.8B00036 |
0.332 |
|
| 2018 |
Zgurskaya HI, Rybenkov VV, Krishnamoorthy G, Leus IV. Trans-envelope multidrug efflux pumps of Gram-negative bacteria and their synergism with the outer membrane barrier. Research in Microbiology. PMID 29454787 DOI: 10.1016/J.Resmic.2018.02.002 |
0.317 |
|
| 2017 |
Krishnamoorthy G, Leus IV, Weeks JW, Wolloscheck D, Rybenkov VV, Zgurskaya HI. Synergy between Active Efflux and Outer Membrane Diffusion Defines Rules of Antibiotic Permeation into Gram-Negative Bacteria. Mbio. 8. PMID 29089426 DOI: 10.1128/Mbio.01172-17 |
0.348 |
|
| 2017 |
Westfall DA, Krishnamoorthy G, Wolloscheck D, Sarkar R, Zgurskaya HI, Rybenkov VV. Bifurcation kinetics of drug uptake by Gram-negative bacteria. Plos One. 12: e0184671. PMID 28926596 DOI: 10.1371/Journal.Pone.0184671 |
0.335 |
|
| 2017 |
Sarkar R, Rybenkov VV. Exploring Condensins with Magnetic Tweezers. Methods in Molecular Biology (Clifton, N.J.). 1624: 161-171. PMID 28842883 DOI: 10.1007/978-1-4939-7098-8_13 |
0.505 |
|
| 2017 |
Petrushenko ZM, Rybenkov VV. Biochemical Analysis of Bacterial Condensins. Methods in Molecular Biology (Clifton, N.J.). 1624: 145-159. PMID 28842882 DOI: 10.1007/978-1-4939-7098-8_12 |
0.536 |
|
| 2017 |
Haynes KM, Abdali N, Jhawar V, Zgurskaya HI, Parks JM, Green AT, Baudry JY, Rybenkov VV, Smith JC, Walker JK. Identification and Structure-Activity Relationships of Novel Compounds that Potentiate the Activities of Antibiotics in Escherichia coli. Journal of Medicinal Chemistry. PMID 28650638 DOI: 10.1021/Acs.Jmedchem.7B00453 |
0.345 |
|
| 2016 |
Abdali N, Parks JM, Haynes K, Chaney JL, Green AT, Wolloscheck D, Walker JK, Rybenkov VV, Baudry JY, Smith JC, Zgurskaya HI. Reviving antibiotics: efflux pump inhibitors that interact with AcrA, a membrane fusion protein of the AcrAB-TolC multidrug efflux pump. Acs Infectious Diseases. PMID 27768847 DOI: 10.1021/Acsinfecdis.6B00167 |
0.356 |
|
| 2016 |
Krishnamoorthy G, Wolloscheck D, Weeks JW, Croft C, Rybenkov VV, Zgurskaya HI. Breaking the permeability barrier of Escherichia coli by controlled hyperporination of the outer membrane. Antimicrobial Agents and Chemotherapy. PMID 27697764 DOI: 10.1128/Aac.01882-16 |
0.331 |
|
| 2016 |
Zhao H, Clevenger A, Ritchey JW, Zgurskaya HI, Rybenkov VV. Pseudomonas aeruginosa condensins support opposite differentiation states. Journal of Bacteriology. PMID 27528506 DOI: 10.1128/Jb.00448-16 |
0.343 |
|
| 2016 |
Rybenkov VV. When Maxwellian demon meets action at a distance: Comment on "Disentangling DNA molecules" by Alexander Vologodskii. Physics of Life Reviews. PMID 27372001 DOI: 10.1016/J.Plrev.2016.06.010 |
0.425 |
|
| 2016 |
Petrushenko ZM, Zhao H, Zgurskaya HI, Rybenkov VV. Novobiocin susceptibility of MukBEF deficient Escherichia coli is combinatorial with efflux and resides in DNA topoisomerases. Antimicrobial Agents and Chemotherapy. PMID 26926630 DOI: 10.1128/Aac.03102-15 |
0.532 |
|
| 2014 |
Rybenkov VV, Herrera V, Petrushenko ZM, Zhao H. MukBEF, a chromosomal organizer. Journal of Molecular Microbiology and Biotechnology. 24: 371-83. PMID 25732339 DOI: 10.1159/000369099 |
0.471 |
|
| 2014 |
Rybenkov VV. Maintenance of chromosome structure in Pseudomonas aeruginosa. Fems Microbiology Letters. 356: 154-65. PMID 24863732 DOI: 10.1111/1574-6968.12478 |
0.464 |
|
| 2013 |
Edwards AL, Sangurdekar DP, Jeong KS, Khodursky AB, Rybenkov VV. Transient growth arrest in Escherichia coli induced by chromosome condensation. Plos One. 8: e84027. PMID 24376785 DOI: 10.1371/Journal.Pone.0084027 |
0.411 |
|
| 2013 |
She W, Mordukhova E, Zhao H, Petrushenko ZM, Rybenkov VV. Mutational analysis of MukE reveals its role in focal subcellular localization of MukBEF. Molecular Microbiology. 87: 539-52. PMID 23171168 DOI: 10.1111/Mmi.12112 |
0.612 |
|
| 2012 |
Sun Z, Tikhonova EB, Zgurskaya HI, Rybenkov VV. Parallel lipoplex folding pathways revealed using magnetic tweezers. Biomacromolecules. 13: 3395-400. PMID 22988939 DOI: 10.1021/Bm301155W |
0.441 |
|
| 2011 |
Petrushenko ZM, She W, Rybenkov VV. A new family of bacterial condensins. Molecular Microbiology. 81: 881-96. PMID 21752107 DOI: 10.1111/J.1365-2958.2011.07763.X |
0.612 |
|
| 2010 |
Petrushenko ZM, Cui Y, She W, Rybenkov VV. Mechanics of DNA bridging by bacterial condensin MukBEF in vitro and in singulo. The Embo Journal. 29: 1126-35. PMID 20075860 DOI: 10.1038/Emboj.2009.414 |
0.634 |
|
| 2009 |
Vologodskii A, Rybenkov VV. Simulation of DNA catenanes. Physical Chemistry Chemical Physics : Pccp. 11: 10543-52. PMID 20145800 DOI: 10.1039/B910812B |
0.436 |
|
| 2009 |
Tikhonova EB, Dastidar V, Rybenkov VV, Zgurskaya HI. Kinetic control of TolC recruitment by multidrug efflux complexes. Proceedings of the National Academy of Sciences of the United States of America. 106: 16416-21. PMID 19805313 DOI: 10.1073/Pnas.0906601106 |
0.34 |
|
| 2009 |
Rybenkov VV. Towards the architecture of the chromosomal architects. Nature Structural & Molecular Biology. 16: 104-5. PMID 19190662 DOI: 10.1038/Nsmb0209-104 |
0.405 |
|
| 2008 |
Cui Y, Petrushenko ZM, Rybenkov VV. MukB acts as a macromolecular clamp in DNA condensation. Nature Structural & Molecular Biology. 15: 411-8. PMID 18376412 DOI: 10.1038/Nsmb.1410 |
0.535 |
|
| 2007 |
She W, Wang Q, Mordukhova EA, Rybenkov VV. MukEF Is required for stable association of MukB with the chromosome. Journal of Bacteriology. 189: 7062-8. PMID 17644586 DOI: 10.1128/Jb.00770-07 |
0.595 |
|
| 2006 |
Petrushenko ZM, Lai CH, Rybenkov VV. Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB. The Journal of Biological Chemistry. 281: 34208-17. PMID 16982609 DOI: 10.1074/Jbc.M606723200 |
0.53 |
|
| 2006 |
Wang Q, Mordukhova EA, Edwards AL, Rybenkov VV. Chromosome condensation in the absence of the non-SMC subunits of MukBEF. Journal of Bacteriology. 188: 4431-41. PMID 16740950 DOI: 10.1128/Jb.00313-06 |
0.399 |
|
| 2006 |
Petrushenko ZM, Lai CH, Rai R, Rybenkov VV. DNA reshaping by MukB. Right-handed knotting, left-handed supercoiling. The Journal of Biological Chemistry. 281: 4606-15. PMID 16368697 DOI: 10.1074/Jbc.M504754200 |
0.536 |
|
| 2002 |
Dekker NH, Rybenkov VV, Duguet M, Crisona NJ, Cozzarelli NR, Bensimon D, Croquette V. The mechanism of type IA topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 99: 12126-31. PMID 12167668 DOI: 10.1073/Pnas.132378799 |
0.349 |
|
| 2001 |
Vologodskii AV, Zhang W, Rybenkov VV, Podtelezhnikov AA, Subramanian D, Griffith JD, Cozzarelli NR. Mechanism of topology simplification by type II DNA topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 98: 3045-9. PMID 11248029 DOI: 10.1073/Pnas.061029098 |
0.478 |
|
| 1999 |
Alexandrov AI, Cozzarelli NR, Holmes VF, Khodursky AB, Peter BJ, Postow L, Rybenkov V, Vologodskii AV. Mechanisms of separation of the complementary strands of DNA during replication. Genetica. 106: 131-40. PMID 10710719 DOI: 10.1023/A:1003749416449 |
0.529 |
|
| 1999 |
Kimura K, Rybenkov VV, Crisona NJ, Hirano T, Cozzarelli NR. 13S condensin actively reconfigures DNA by introducing global positive writhe: implications for chromosome condensation. Cell. 98: 239-48. PMID 10428035 DOI: 10.1016/S0092-8674(00)81018-1 |
0.526 |
|
| 1997 |
Rybenkov VV, Ullsperger C, Vologodskii AV, Cozzarelli NR. Simplification of DNA topology below equilibrium values by type II topoisomerases. Science (New York, N.Y.). 277: 690-3. PMID 9235892 DOI: 10.1126/Science.277.5326.690 |
0.468 |
|
| 1997 |
Rybenkov VV, Vologodskii AV, Cozzarelli NR. The effect of ionic conditions on the conformations of supercoiled DNA. II. Equilibrium catenation. Journal of Molecular Biology. 267: 312-23. PMID 9096228 DOI: 10.1006/Jmbi.1996.0877 |
0.468 |
|
| 1997 |
Rybenkov VV, Vologodskii AV, Cozzarelli NR. The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis. Journal of Molecular Biology. 267: 299-311. PMID 9096227 DOI: 10.1006/Jmbi.1996.0876 |
0.445 |
|
| 1997 |
Rybenkov VV, Vologodskii AV, Cozzarelli NR. The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling. Nucleic Acids Research. 25: 1412-8. PMID 9060437 DOI: 10.1093/Nar/25.7.1412 |
0.438 |
|
| 1993 |
Rybenkov VV, Cozzarelli NR, Vologodskii AV. Probability of DNA knotting and the effective diameter of the DNA double helix. Proceedings of the National Academy of Sciences of the United States of America. 90: 5307-11. PMID 8506378 DOI: 10.1073/Pnas.90.11.5307 |
0.449 |
|
| 1992 |
Rybenkov VV, Vologodskiǐ AV. Effective diameter of DNA Molekulyarnaya Biologiya. 26: 1433-1439. PMID 1491684 |
0.351 |
|
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