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Zhongyu Yang, Ph.D. - Publications

Affiliations: 
2010 University of Pittsburgh, Pittsburgh, PA, United States 
Area:
Physical Chemistry, Biochemistry, Analytical Chemistry
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Vardhan H, Al-Enizi AM, Nafady A, Pan Y, Yang Z, Gutiérrez HR, Han X, Ma S. Single-Pore versus Dual-Pore Bipyridine-Based Covalent-Organic Frameworks: An Insight into the Heterogeneous Catalytic Activity for Selective CH Functionalization. Small (Weinheim An Der Bergstrasse, Germany). e2003970. PMID 32914540 DOI: 10.1002/Smll.202003970  0.304
2020 Zha F, Yang Z, Rao J, Chen B. Conjugation of pea protein isolate via Maillard-driven chemistry with saccharide of diverse molecular mass: molecular interactions leading to aggregation or glycation. Journal of Agricultural and Food Chemistry. PMID 32820920 DOI: 10.1021/Acs.Jafc.0C04281  0.302
2020 Pan Y, Zholobko O, Li H, Jin J, Hu J, Chen B, Voronov A, Yang Z. Spatial Distribution and Solvent Polarity-Triggered Release of Polypeptide Incorporated into Invertible Micellar Assemblies. Acs Applied Materials & Interfaces. PMID 32057221 DOI: 10.1021/Acsami.9B22435  0.326
2019 Li H, Pan Y, Yang Z, Rao J, Chen B. Improving Antioxidant Activity of β-Lactoglobulin by Nature-inspired Conjugation with Gentisic Acid. Journal of Agricultural and Food Chemistry. PMID 31566971 DOI: 10.1021/Acs.Jafc.9B05304  0.303
2019 Vardhan H, Pan Y, Yang Z, Verma G, Nafady A, Al-Enizi AM, Alotaibi TM, Almaghrabi OA, Ma S. Iridium complex immobilization on covalent organic framework for effective C—H borylation Apl Materials. 7: 101111. DOI: 10.1063/1.5122674  0.307
2019 Sun Q, Pan Y, Wang X, Li H, Farmakes J, Aguila B, Yang Z, Ma S. Mapping out the Degree of Freedom of Hosted Enzymes in Confined Spatial Environments Chem. 5: 3184-3195. DOI: 10.1016/J.Chempr.2019.10.002  0.357
2018 Pan Y, Li H, Farmakes J, Xiao F, Chen B, Ma S, Yang Z. How do Enzymes Orient when Trapped on Metal-Organic Framework (MOF) Surfaces? Journal of the American Chemical Society. PMID 30418778 DOI: 10.1021/Jacs.8B09257  0.325
2018 Pan Y, Zholobko O, Voronov A, Yang Z. Inversion of Polymeric Micelles Probed by Spin Labeled Peptide Incorporation and Electron Paramagnetic Resonance The Journal of Physical Chemistry C. 122: 25692-25699. DOI: 10.1021/Acs.Jpcc.8B09206  0.313
2017 Pan Y, Neupane S, Farmakes J, Oh M, Bentz K, Choi Y, Yang Z. Insights on the Structure, Molecular Weight, and Activity of an Antibacterial Protein-Polymer Hybrid. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 29131929 DOI: 10.1002/Cphc.201701097  0.351
2017 Pan Y, Neupane S, Farmakes J, Bridges M, Froberg J, Rao J, Qian SY, Liu G, Choi Y, Yang Z. Probing the structural basis and adsorption mechanism of an enzyme on nano-sized protein carriers. Nanoscale. PMID 28244542 DOI: 10.1039/C7Nr00276A  0.346
2017 Neupane S, Pan Y, Takalkar S, Bentz K, Farmakes J, Xu Y, Chen B, Liu G, Qian SY, Yang Z. Probing the Aggregation Mechanism of Gold Nanoparticles Triggered by a Globular Protein The Journal of Physical Chemistry C. 121: 1377-1386. DOI: 10.1021/Acs.Jpcc.6B11963  0.305
2017 Bridges MD, Yang Z, Altenbach C, Hubbell WL. Analysis of Saturation Recovery Amplitudes to Characterize Conformational Exchange in Spin-Labeled Proteins Applied Magnetic Resonance. 48: 1315-1340. DOI: 10.1007/S00723-017-0936-3  0.387
2017 Pan Y, Neupane S, Farmakes J, Liu B, Sun W, Yang Z. Spin-labeling of polymeric micelles and application in probing micelle swelling using EPR spectroscopy Journal of Polymer Science Part B: Polymer Physics. 55: 1770-1782. DOI: 10.1002/Polb.24426  0.341
2016 Yang Z, Bridges MD, López CJ, Rogozhnikova OY, Trukhin DV, Brooks EK, Tormyshev V, Halpern HJ, Hubbell WL. A triarylmethyl spin label for long-range distance measurement at physiological temperatures using T1 relaxation enhancement. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 269: 50-54. PMID 27214582 DOI: 10.1016/J.Jmr.2016.05.006  0.464
2016 Davydov DR, Yang Z, Davydova N, Halpert JR, Hubbell WL. Conformational Mobility in Cytochrome P450 3A4 Explored by Pressure-Perturbation EPR Spectroscopy. Biophysical Journal. 110: 1485-98. PMID 27074675 DOI: 10.1016/J.Bpj.2016.02.026  0.309
2016 Guo R, Gaffney K, Yang Z, Kim M, Sungsuwan S, Huang X, Hubbell WL, Hong H. Steric trapping reveals a cooperativity network in the intramembrane protease GlpG. Nature Chemical Biology. PMID 26999782 DOI: 10.1038/Nchembio.2048  0.33
2016 Mei Y, Ramanathan A, Glover K, Stanley C, Sanishvili R, Chakravarthy S, Yang Z, Colbert CL, Sinha S. Conformational Flexibility Enables Function of a BECN1 Region Essential for Starvation-Mediated Autophagy. Biochemistry. PMID 26937551 DOI: 10.1021/Acs.Biochem.5B01264  0.319
2016 Guo R, Gaffney K, Yang Z, Kim M, Sungsuwan S, Huang X, Hubbell WL, Hong H. General Steric Trapping Strategy Reveals an Intricate Cooperativity Network in the Intramembrane Protease GlpG under Native Conditions Biophysical Journal. 110: 257a. DOI: 10.1016/J.Bpj.2015.11.1409  0.332
2015 Yang Z, Ji M, Cunningham TF, Saxena S. Cu(2+) as an ESR Probe of Protein Structure and Function. Methods in Enzymology. 563: 459-81. PMID 26478495 DOI: 10.1016/Bs.Mie.2015.05.026  0.704
2015 Lerch MT, Yang Z, Altenbach C, Hubbell WL. High-Pressure EPR and Site-Directed Spin Labeling for Mapping Molecular Flexibility in Proteins. Methods in Enzymology. 564: 29-57. PMID 26477247 DOI: 10.1016/Bs.Mie.2015.07.004  0.364
2015 Yang Z, Bridges M, Lerch MT, Altenbach C, Hubbell WL. Saturation Recovery EPR and Nitroxide Spin Labeling for Exploring Structure and Dynamics in Proteins. Methods in Enzymology. 564: 3-27. PMID 26477246 DOI: 10.1016/Bs.Mie.2015.07.016  0.457
2015 Dror RO, Mildorf TJ, Hilger D, Manglik A, Borhani DW, Arlow DH, Philippsen A, Villanueva N, Yang Z, Lerch MT, Hubbell WL, Kobilka BK, Sunahara RK, Shaw DE. SIGNAL TRANSDUCTION. Structural basis for nucleotide exchange in heterotrimeric G proteins. Science (New York, N.Y.). 348: 1361-5. PMID 26089515 DOI: 10.1126/Science.Aaa5264  0.311
2015 Manglik A, Kim TH, Masureel M, Altenbach C, Yang Z, Hilger D, Lerch MT, Kobilka TS, Thian FS, Hubbell WL, Prosser RS, Kobilka BK. Structural Insights into the Dynamic Process of β2-Adrenergic Receptor Signaling. Cell. 161: 1101-11. PMID 25981665 DOI: 10.1016/J.Cell.2015.04.043  0.34
2015 Lerch MT, López CJ, Yang Z, Kreitman MJ, Horwitz J, Hubbell WL. Structure-relaxation mechanism for the response of T4 lysozyme cavity mutants to hydrostatic pressure. Proceedings of the National Academy of Sciences of the United States of America. 112: E2437-46. PMID 25918400 DOI: 10.1073/Pnas.1506505112  0.32
2014 Yang Z, Jiménez-Osés G, López CJ, Bridges MD, Houk KN, Hubbell WL. Long-range distance measurements in proteins at physiological temperatures using saturation recovery EPR spectroscopy. Journal of the American Chemical Society. 136: 15356-65. PMID 25290172 DOI: 10.1021/Ja5083206  0.469
2014 Vendome J, Felsovalyi K, Song H, Yang Z, Jin X, Brasch J, Harrison OJ, Ahlsen G, Bahna F, Kaczynska A, Katsamba PS, Edmond D, Hubbell WL, Shapiro L, Honig B. Structural and energetic determinants of adhesive binding specificity in type I cadherins. Proceedings of the National Academy of Sciences of the United States of America. 111: E4175-84. PMID 25253890 DOI: 10.1073/Pnas.1416737111  0.362
2014 Thompson MC, Wheatley NM, Jorda J, Sawaya MR, Gidaniyan SD, Ahmed H, Yang Z, McCarty KN, Whitelegge JP, Yeates TO. Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein. Journal of Molecular Biology. 426: 3287-304. PMID 25102080 DOI: 10.1016/J.Jmb.2014.07.018  0.335
2014 Lerch MT, Yang Z, Brooks EK, Hubbell WL. Mapping protein conformational heterogeneity under pressure with site-directed spin labeling and double electron-electron resonance. Proceedings of the National Academy of Sciences of the United States of America. 111: E1201-10. PMID 24707053 DOI: 10.1073/Pnas.1403179111  0.367
2014 Song H, Yang Z, Felsovalyi K, Hubbell W, Shapiro L, Honig B. Structural and Energetic Determinants of Adhesive Binding Specificity in Type I Cadherins: The Role of Multiple Conformations in Tuning Affinities Biophysical Journal. 106: 464a. DOI: 10.1016/J.Bpj.2013.11.2628  0.342
2013 López CJ, Yang Z, Altenbach C, Hubbell WL. Conformational selection and adaptation to ligand binding in T4 lysozyme cavity mutants. Proceedings of the National Academy of Sciences of the United States of America. 110: E4306-15. PMID 24167295 DOI: 10.1073/Pnas.1318754110  0.381
2013 Hubbell WL, López CJ, Altenbach C, Yang Z. Technological advances in site-directed spin labeling of proteins. Current Opinion in Structural Biology. 23: 725-33. PMID 23850140 DOI: 10.1016/J.Sbi.2013.06.008  0.424
2012 Yang Z, Liu Y, Borbat P, Zweier JL, Freed JH, Hubbell WL. Pulsed ESR dipolar spectroscopy for distance measurements in immobilized spin labeled proteins in liquid solution. Journal of the American Chemical Society. 134: 9950-2. PMID 22676043 DOI: 10.1021/Ja303791P  0.558
2012 Yang Z, Kurpiewski MR, Ji M, Townsend JE, Mehta P, Jen-Jacobson L, Saxena S. ESR spectroscopy identifies inhibitory Cu2+ sites in a DNA-modifying enzyme to reveal determinants of catalytic specificity. Proceedings of the National Academy of Sciences of the United States of America. 109: E993-1000. PMID 22493217 DOI: 10.1073/Pnas.1200733109  0.58
2012 Yang Z, Liu Y, Borbat P, Zweier J, Freed J, Hubbell W. Room Temperature Electron Spin Resonance Distance Measurements in T4 Lysozyme using Trityl-Based Spin Labels Biophysical Journal. 102: 405a. DOI: 10.1016/J.Bpj.2011.11.2213  0.564
2011 Ji M, Yang Z, Mehta P, Jen-Jacobson L, Saxena S. Insights on Copper Coordination and Reactivity of Endonuclease EcoRI by ESR Spectroscopy and Modeling Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.594  0.572
2010 Yang Z, Kise D, Saxena S. An approach towards the measurement of nanometer range distances based on Cu2+ ions and ESR. The Journal of Physical Chemistry. B. 114: 6165-74. PMID 20397677 DOI: 10.1021/Jp911637S  0.533
2010 Yang Z, Ji M, Saxena S. Practical Aspects of Copper Ion-Based Double Electron Electron Resonance Distance Measurements Applied Magnetic Resonance. 39: 487-500. DOI: 10.1007/S00723-010-0181-5  0.527
2009 Townsend JE, Stone K, Yang Z, Sarver J, Saxena S, Jen-Jacobson L. The Enfolding Arms of EcoRI Endonuclease as Probed by ESR Experiments Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.222  0.697
2007 Yang Z, Becker J, Saxena S. On Cu(II)-Cu(II) distance measurements using pulsed electron electron double resonance. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 188: 337-43. PMID 17825593 DOI: 10.1016/J.Jmr.2007.08.006  0.542
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