| Year |
Citation |
Score |
| 2021 |
Zimmer-Faust AG, Steele JA, Xiong X, Staley C, Griffith M, Sadowsky MJ, Diaz M, Griffith JF. A Combined Digital PCR and Next Generation DNA-Sequencing Based Approach for Tracking Nearshore Pollutant Dynamics Along the Southwest United States/Mexico Border. Frontiers in Microbiology. 12: 674214. PMID 34421839 DOI: 10.3389/fmicb.2021.674214 |
0.363 |
|
| 2020 |
Mathai PP, Staley C, Sadowsky MJ. Sequence-enabled community-based microbial source tracking in surface waters using machine learning classification: A review. Journal of Microbiological Methods. 177: 106050. PMID 32891632 DOI: 10.1016/J.Mimet.2020.106050 |
0.414 |
|
| 2020 |
Ahmed W, Toze S, Veal C, Fisher P, Zhang Q, Zhu Z, Staley C, Sadowsky MJ. Comparative decay of culturable faecal indicator bacteria, microbial source tracking marker genes, and enteric pathogens in laboratory microcosms that mimic a sub-tropical environment. The Science of the Total Environment. 751: 141475. PMID 32890804 DOI: 10.1016/J.Scitotenv.2020.141475 |
0.464 |
|
| 2020 |
Khoruts A, Staley C, Sadowsky MJ. Faecal microbiota transplantation for Clostridioides difficile: mechanisms and pharmacology. Nature Reviews. Gastroenterology & Hepatology. PMID 32843743 DOI: 10.1038/S41575-020-0350-4 |
0.318 |
|
| 2020 |
Lima JY, Moreira C, Nunes Freitas PN, Olchanheski LR, Veiga Pileggi SA, Etto RM, Staley C, Sadowsky MJ, Pileggi M. Structuring biofilm communities living in pesticide contaminated water. Heliyon. 6: e03996. PMID 32462094 DOI: 10.1016/J.Heliyon.2020.E03996 |
0.434 |
|
| 2020 |
Fernandes AFT, Wang P, Staley C, Aparecida Silva Moretto J, Miguel Altarugio L, Chagas Campanharo S, Guedes Stehling E, Jay Sadowsky M. Impact of Atrazine Exposure on the Microbial Community Structure in a Brazilian Tropical Latosol Soil. Microbes and Environments. 35. PMID 32269200 DOI: 10.1264/Jsme2.Me19143 |
0.325 |
|
| 2020 |
Daws SC, Cline LA, Rotenberry J, Sadowsky MJ, Staley C, Dalzell B, Kennedy PG. Do shared traits create the same fates? Examining the link between morphological type and the biogeography of fungal and bacterial communities Fungal Ecology. 46: 100948. DOI: 10.1016/J.Funeco.2020.100948 |
0.362 |
|
| 2019 |
Rashidi A, Kaiser T, Holtan SG, Rehman TU, Weisdorf DJ, Khoruts A, Staley C. Levaquin gets a pass. Biology of Blood and Marrow Transplantation : Journal of the American Society For Blood and Marrow Transplantation. PMID 31870930 DOI: 10.1016/J.Bbmt.2019.12.722 |
0.339 |
|
| 2019 |
O'Dea C, Zhang Q, Staley C, Masters N, Kuballa A, Fisher P, Veal C, Stratton H, Sadowsky MJ, Ahmed W, Katouli M. Compositional and temporal stability of fecal taxon libraries for use with SourceTracker in sub-tropical catchments. Water Research. 165: 114967. PMID 31430652 DOI: 10.1016/J.Watres.2019.114967 |
0.433 |
|
| 2019 |
Staley C, Kaiser T, Vaughn BP, Graiziger C, Hamilton MJ, Kabage AJ, Khoruts A, Sadowsky MJ. Durable Long-Term Bacterial Engraftment following Encapsulated Fecal Microbiota Transplantation To Treat Clostridium difficile Infection. Mbio. 10. PMID 31337728 DOI: 10.1128/Mbio.01586-19 |
0.345 |
|
| 2019 |
Weiskerger CJ, Brandão J, Ahmed W, Aslan A, Avolio L, Badgley BD, Boehm AB, Edge TA, Fleisher JM, Heaney CD, Jordao L, Kinzelman JL, Klaus JS, Kleinheinz GT, Meriläinen P, ... ... Staley C, et al. Impacts of a changing earth on microbial dynamics and human health risks in the continuum between beach water and sand. Water Research. 162: 456-470. PMID 31301475 DOI: 10.1016/J.Watres.2019.07.006 |
0.771 |
|
| 2019 |
Schwab M, Bergonzi C, Sakkos J, Staley C, Zhang Q, Sadowsky MJ, Aksan A, Elias M. Signal Disruption Leads to Changes in Bacterial Community Population. Frontiers in Microbiology. 10: 611. PMID 30984139 DOI: 10.3389/Fmicb.2019.00611 |
0.354 |
|
| 2019 |
Dostal Webster A, Staley C, Hamilton MJ, Huang M, Fryxell K, Erickson R, Kabage AJ, Sadowsky MJ, Khoruts A. Influence of short-term changes in dietary sulfur on the relative abundances of intestinal sulfate-reducing bacteria. Gut Microbes. 1-11. PMID 30810441 DOI: 10.1080/19490976.2018.1559682 |
0.344 |
|
| 2019 |
Rashidi A, Kaiser T, Shields-Cutler R, Graiziger C, Ur Rehman T, Holtan SG, Weisdorf DJ, Knights D, Khoruts A, Staley C. Gut Dysbiosis Increases Gut Barrier Damage during Anti-Leukemia Chemotherapy: Implications for Acute Graft-Versus-Host Disease Biology of Blood and Marrow Transplantation. 25: S142-S143. DOI: 10.1016/J.Bbmt.2018.12.433 |
0.324 |
|
| 2019 |
Rashidi A, Kaiser T, Shields-Cutler R, Graiziger C, Rehman TU, Holtan SG, Weisdorf DJ, Knights D, Khoruts A, Staley C. Outpatient-to-Inpatient Transition Causes Marked Dysbiosis in Allogeneic Hematopoietic Cell Transplantation Recipients Biology of Blood and Marrow Transplantation. 25: S47. DOI: 10.1016/J.Bbmt.2018.12.124 |
0.309 |
|
| 2019 |
Wang Z, Zhang Q, Staley C, Gao H, Ishii S, Wei X, Liu J, Cheng J, Hao M, Sadowsky MJ. Impact of long-term grazing exclusion on soil microbial community composition and nutrient availability Biology and Fertility of Soils. 55: 121-134. DOI: 10.1007/S00374-018-01336-5 |
0.324 |
|
| 2018 |
Brown CM, Mathai PP, Loesekann T, Staley C, Sadowsky MJ. Influence of Library Composition on SourceTracker Predictions for Community-Based Microbial Source Tracking. Environmental Science & Technology. PMID 30475593 DOI: 10.1021/Acs.Est.8B04707 |
0.378 |
|
| 2018 |
Ahmed W, Staley C, Kaiser T, Sadowsky MJ, Kozak S, Beale D, Simpson S. Decay of sewage-associated bacterial communities in fresh and marine environmental waters and sediment. Applied Microbiology and Biotechnology. PMID 29869677 DOI: 10.1007/s00253-018-9112-4 |
0.378 |
|
| 2018 |
Unno T, Staley C, Brown CM, Han D, Sadowksy MJ, Hur HG. Fecal Pollution: New Trends and Challenges in Microbial Source Tracking Using Next-Generation-Sequencing. Environmental Microbiology. PMID 29797757 DOI: 10.1111/1462-2920.14281 |
0.308 |
|
| 2018 |
Ahmed W, Hamilton KA, Lobos A, Hughes B, Staley C, Sadowsky MJ, Harwood VJ. Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage. Environment International. 117: 243-249. PMID 29772486 DOI: 10.1016/J.Envint.2018.05.012 |
0.661 |
|
| 2018 |
Beale DJ, Crosswell J, Karpe AV, Metcalfe SS, Morrison PD, Staley C, Ahmed W, Sadowsky MJ, Palombo EA, Steven ADL. Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach. The Science of the Total Environment. 631: 1328-1341. PMID 29727957 DOI: 10.1016/J.Scitotenv.2018.03.106 |
0.374 |
|
| 2018 |
Staley C, Breuillin-Sessoms F, Wang P, Kaiser T, Venterea RT, Sadowsky MJ. Urea Amendment Decreases Microbial Diversity and Selects for Specific Nitrifying Strains in Eight Contrasting Agricultural Soils. Frontiers in Microbiology. 9: 634. PMID 29670600 DOI: 10.3389/Fmicb.2018.00634 |
0.341 |
|
| 2018 |
Salfer IJ, Staley C, Johnson HE, Sadowsky MJ, Stern MD. Comparisons of bacterial and Archaeal Communities in the Rumen and a Dual-Flow Continuous Culture Fermentation System using Amplicon Sequencing. Journal of Animal Science. PMID 29529208 DOI: 10.1093/Jas/Skx056 |
0.373 |
|
| 2018 |
Staley C, Kaiser T, Lobos A, Ahmed W, Harwood VJ, Brown CM, Sadowsky MJ. Application of SourceTracker for Accurate Identification of Fecal Pollution in Recreational Freshwater: A Double-Blinded Study. Environmental Science & Technology. PMID 29505249 DOI: 10.1021/Acs.Est.7B05401 |
0.6 |
|
| 2017 |
Tomasek A, Staley C, Wang P, Kaiser T, Lurndahl N, Kozarek JL, Hondzo M, Sadowsky MJ. Increased Denitrification Rates Associated with Shifts in Prokaryotic Community Composition Caused by Varying Hydrologic Connectivity. Frontiers in Microbiology. 8: 2304. PMID 29213260 DOI: 10.3389/Fmicb.2017.02304 |
0.385 |
|
| 2017 |
Beale DJ, Crosswell J, Karpe AV, Ahmed W, Williams M, Morrison PD, Metcalfe S, Staley C, Sadowsky MJ, Palombo EA, Steven ADL. A multi-omics based ecological analysis of coastal marine sediments from Gladstone, in Australia's Central Queensland, and Heron Island, a nearby fringing platform reef. The Science of the Total Environment. 609: 842-853. PMID 28768216 DOI: 10.1016/J.Scitotenv.2017.07.184 |
0.387 |
|
| 2017 |
Brown CM, Staley C, Wang P, Dalzell B, Chun CL, Sadowsky MJ. A High-Throughput DNA Sequencing Approach to Determine Sources of Fecal Bacteria in a Lake Superior Estuary. Environmental Science & Technology. PMID 28640599 DOI: 10.1021/Acs.Est.7B01353 |
0.376 |
|
| 2017 |
Romão D, Staley C, Ferreira F, Rodrigues R, Sabino R, Veríssimo C, Wang P, Sadowsky M, Brandão J. Next-generation sequencing and culture-based techniques offer complementary insights into fungi and prokaryotes in beach sands. Marine Pollution Bulletin. PMID 28442200 DOI: 10.1016/J.Marpolbul.2017.04.036 |
0.367 |
|
| 2017 |
Staley C, Kaiser T, Gidley ML, Enochs IC, Jones PR, Goodwin KD, Sinigalliano CD, Sadowsky MJ, Chun CL. A Next-Generation Sequencing Approach to Characterize the Impacts of Land-based Sources of Pollution on the Microbiota of Southeast Florida Coral Reefs. Applied and Environmental Microbiology. PMID 28341673 DOI: 10.1128/Aem.03378-16 |
0.339 |
|
| 2017 |
Beale DJ, Karpe AV, Ahmed W, Cook S, Morrison PD, Staley C, Sadowsky MJ, Palombo EA. A Community Multi-Omics Approach towards the Assessment of Surface Water Quality in an Urban River System. International Journal of Environmental Research and Public Health. 14. PMID 28335448 DOI: 10.3390/Ijerph14030303 |
0.437 |
|
| 2017 |
Staley C, Hamilton MJ, Vaughn BP, Graiziger CT, Newman KM, Kabage AJ, Sadowsky MJ, Khoruts A. Successful Resolution of Recurrent Clostridium difficile Infection using Freeze-Dried, Encapsulated Fecal Microbiota; Pragmatic Cohort Study. The American Journal of Gastroenterology. PMID 28195180 DOI: 10.1038/Ajg.2017.6 |
0.334 |
|
| 2017 |
Sadowsky MJ, Staley C, Heiner C, Hall R, Kelly CR, Brandt L, Khoruts A. Analysis of Gut Microbiota - an ever changing landscape. Gut Microbes. 0. PMID 28051919 DOI: 10.1080/19490976.2016.1277313 |
0.365 |
|
| 2017 |
Hundt PJ, Hundt MJ, Staley C, Sadowsky MJ, Simons AM. The Diet and Gut Microbial Communities of Two Closely Related Combtooth Blennies, Chasmodes saburrae and Scartella cristata Copeia. 105: 249-256. DOI: 10.1643/Ci-16-505 |
0.313 |
|
| 2017 |
Tomasek A, Kozarek JL, Hondzo M, Lurndahl N, Sadowsky MJ, Wang P, Staley C. Environmental drivers of denitrification rates and denitrifying gene abundances in channels and riparian areas Water Resources Research. 53: 6523-6538. DOI: 10.1002/2016Wr019566 |
0.321 |
|
| 2016 |
Staley C, Kelly CR, Brandt LJ, Khoruts A, Sadowsky MJ. Complete Microbiota Engraftment Is Not Essential for Recovery from Recurrent Clostridium difficile Infection following Fecal Microbiota Transplantation. Mbio. 7. PMID 27999162 DOI: 10.1128/Mbio.01965-16 |
0.351 |
|
| 2016 |
Staley C, Weingarden AR, Khoruts A, Sadowsky MJ. Interaction of gut microbiota with bile acid metabolism and its influence on disease states. Applied Microbiology and Biotechnology. PMID 27888332 DOI: 10.1007/S00253-016-8006-6 |
0.315 |
|
| 2016 |
Ahmed W, Staley C, Sidhu J, Sadowsky M, Toze S. Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia. Applied Microbiology and Biotechnology. PMID 27838840 DOI: 10.1007/S00253-016-7959-9 |
0.41 |
|
| 2016 |
Ahmed W, Staley C, Hamilton KA, Beale DJ, Sadowsky MJ, Toze S, Haas CN. Amplicon-based taxonomic characterization of bacteria in urban and peri-urban roof-harvested rainwater stored in tanks. The Science of the Total Environment. 576: 326-334. PMID 27792951 DOI: 10.1016/J.Scitotenv.2016.10.090 |
0.46 |
|
| 2016 |
Chun CL, Peller JR, Shively D, Byappanahalli MN, Whitman RL, Staley C, Zhang Q, Ishii S, Sadowsky MJ. Virulence and biodegradation potential of dynamic microbial communities associated with decaying Cladophora in Great Lakes. The Science of the Total Environment. 574: 872-880. PMID 27665447 DOI: 10.1016/J.Scitotenv.2016.09.107 |
0.427 |
|
| 2016 |
Zhang Q, Eichmiller JJ, Staley C, Sadowsky MJ, Ishii S. Correlations between pathogen concentration and fecal indicator marker genes in beach environments. The Science of the Total Environment. 573: 826-830. PMID 27595940 DOI: 10.1016/J.Scitotenv.2016.08.122 |
0.436 |
|
| 2016 |
Eichmiller JJ, Hamilton MJ, Staley C, Sadowsky MJ, Sorensen PW. Environment shapes the fecal microbiome of invasive carp species. Microbiome. 4: 44. PMID 27514729 DOI: 10.1186/S40168-016-0190-1 |
0.316 |
|
| 2016 |
Fernandez AL, Sheaffer CC, Wyse DL, Staley C, Gould TJ, Sadowsky MJ. Structure of bacterial communities in soil following cover crop and organic fertilizer incorporation. Applied Microbiology and Biotechnology. PMID 27464828 DOI: 10.1007/S00253-016-7736-9 |
0.315 |
|
| 2016 |
Staley C, Sadowsky MJ. Regional Similarity and Consistent Patterns of Local Variation in Beach Sand Bacterial Communities throughout the Northern Hemisphere. Applied and Environmental Microbiology. PMID 26921429 DOI: 10.1128/Aem.00247-16 |
0.369 |
|
| 2016 |
Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Sediments and Soils Act as Reservoirs for Taxonomic and Functional Bacterial Diversity in the Upper Mississippi River. Microbial Ecology. PMID 26879939 DOI: 10.1007/S00248-016-0729-5 |
0.377 |
|
| 2016 |
Staley C, Sadowsky MJ. Application of metagenomics to assess microbial communities in water and other environmental matrices Journal of the Marine Biological Association of the United Kingdom. 96: 121-129. DOI: 10.1017/S0025315415001496 |
0.342 |
|
| 2015 |
Ahmed W, Staley C, Sadowsky MJ, Gyawali P, Sidhu JP, Palmer A, Beale DJ, Toze S. Toolbox Approaches Using Molecular Markers and 16S rRNA Gene Amplicon Data Sets for Identification of Fecal Pollution in Surface Water. Applied and Environmental Microbiology. 81: 7067-77. PMID 26231650 DOI: 10.1128/Aem.02032-15 |
0.487 |
|
| 2015 |
Li X, Harwood VJ, Nayak B, Staley C, Sadowsky MJ, Weidhaas J. A novel microbial source tracking microarray for pathogen detection and fecal source identification in environmental systems. Environmental Science & Technology. 49: 7319-29. PMID 25970344 DOI: 10.1021/Acs.Est.5B00980 |
0.733 |
|
| 2015 |
Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Evaluation of water sampling methodologies for amplicon-based characterization of bacterial community structure. Journal of Microbiological Methods. 114: 43-50. PMID 25956022 DOI: 10.1016/J.Mimet.2015.05.003 |
0.392 |
|
| 2015 |
Staley C, Johnson D, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Frequencies of heavy metal resistance are associated with land cover type in the Upper Mississippi River. The Science of the Total Environment. 511: 461-8. PMID 25569582 DOI: 10.1016/J.Scitotenv.2014.12.069 |
0.314 |
|
| 2015 |
Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River. The Science of the Total Environment. 505: 435-45. PMID 25461045 DOI: 10.1016/J.Scitotenv.2014.10.012 |
0.32 |
|
| 2015 |
Solo-Gabriele HM, Harwood VJ, Kay D, Fujioka RS, Sadowsky MJ, Whitman RL, Wither A, Caniça M, Carvalho da Fonseca R, Duarte A, Edge TA, Gargaté MJ, Gunde-Cimerman N, Hagen F, McLellan SL, ... ... Staley C, et al. Beach sand and the potential for infectious disease transmission: observations and recommendations Journal of the Marine Biological Association of the United Kingdom. DOI: 10.1017/S0025315415000843 |
0.643 |
|
| 2014 |
Whitman R, Harwood VJ, Edge TA, Nevers M, Byappanahalli M, Vijayavel K, Brandão J, Sadowsky MJ, Alm EW, Crowe A, Ferguson D, Ge Z, Halliday E, Kinzelman J, Kleinheinz G, ... ... Staley C, et al. Microbes in Beach Sands: Integrating Environment, Ecology and Public Health. Re/Views in Environmental Science and Bio/Technology (Online). 13: 329-368. PMID 25383070 DOI: 10.1007/S11157-014-9340-8 |
0.766 |
|
| 2014 |
Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Bacterial community structure is indicative of chemical inputs in the Upper Mississippi River. Frontiers in Microbiology. 5: 524. PMID 25339945 DOI: 10.3389/Fmicb.2014.00524 |
0.388 |
|
| 2014 |
Staley C, Gould TJ, Wang P, Phillips J, Cotner JB, Sadowsky MJ. Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover. Frontiers in Microbiology. 5: 414. PMID 25152748 DOI: 10.3389/Fmicb.2014.00414 |
0.335 |
|
| 2014 |
Staley C, Dunny GM, Sadowsky MJ. Environmental and animal-associated enterococci. Advances in Applied Microbiology. 87: 147-86. PMID 24581391 DOI: 10.1016/B978-0-12-800261-2.00004-9 |
0.326 |
|
| 2014 |
Staley C, Harwood VJ. Differential expression of a sodium-phosphate cotransporter among Vibrio vulnificus strains. Microbial Ecology. 67: 24-33. PMID 24141939 DOI: 10.1007/S00248-013-0300-6 |
0.574 |
|
| 2014 |
Harwood VJ, Staley C, Badgley BD, Borges K, Korajkic A. Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes. Fems Microbiology Reviews. 38: 1-40. PMID 23815638 DOI: 10.1111/1574-6976.12031 |
0.758 |
|
| 2013 |
Staley C, Chase E, Harwood VJ. Detection and differentiation of Vibrio vulnificus and V. sinaloensis in water and oysters of a Gulf of Mexico estuary. Environmental Microbiology. 15: 623-33. PMID 23240813 DOI: 10.1111/1462-2920.12045 |
0.637 |
|
| 2012 |
Chase E, Hunting J, Staley C, Harwood VJ. Microbial source tracking to identify human and ruminant sources of faecal pollution in an ephemeral Florida river. Journal of Applied Microbiology. 113: 1396-406. PMID 22963043 DOI: 10.1111/Jam.12007 |
0.636 |
|
| 2012 |
Staley C, Reckhow KH, Lukasik J, Harwood VJ. Assessment of sources of human pathogens and fecal contamination in a Florida freshwater lake. Water Research. 46: 5799-812. PMID 22939220 DOI: 10.1016/J.Watres.2012.08.012 |
0.677 |
|
| 2012 |
Staley C, Gordon KV, Schoen ME, Harwood VJ. Performance of two quantitative PCR methods for microbial source tracking of human sewage and implications for microbial risk assessment in recreational waters. Applied and Environmental Microbiology. 78: 7317-26. PMID 22885746 DOI: 10.1128/Aem.01430-12 |
0.776 |
|
| 2012 |
Shanks OC, Sivaganesan M, Peed L, Kelty CA, Blackwood AD, Greene MR, Noble RT, Bushon RN, Stelzer EA, Kinzelman J, Anan'eva T, Sinigalliano C, Wanless D, Griffith J, Cao Y, ... ... Staley C, et al. Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria. Environmental Science & Technology. 46: 945-53. PMID 22133009 DOI: 10.1021/Es2031455 |
0.636 |
|
| 2011 |
Staley C, Jones MK, Wright AC, Harwood VJ. Genetic and quantitative assessment of Vibrio vulnificus populations in oyster (Crassostrea virginica) tissues. Environmental Microbiology Reports. 3: 543-9. PMID 23761333 DOI: 10.1111/J.1758-2229.2011.00256.X |
0.587 |
|
| 2010 |
Staley C, Harwood VJ. The use of genetic typing methods to discriminate among strains of Vibrio cholerae, V. parahaemolyticus, and V. vulnificus. Journal of Aoac International. 93: 1553-69. PMID 21140669 DOI: 10.1093/Jaoac/93.5.1553 |
0.604 |
|
| 2008 |
Gordon KV, Vickery MC, DePaola A, Staley C, Harwood VJ. Real-time PCR assays for quantification and differentiation of Vibrio vulnificus strains in oysters and water. Applied and Environmental Microbiology. 74: 1704-9. PMID 18245234 DOI: 10.1128/Aem.01100-07 |
0.76 |
|
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