Juw W. Park, Ph.D. - Publications

2009 University of Iowa, Iowa City, IA 
Bioinformatics Biology

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hwang JY, Jung S, Kook TL, Rouchka EC, Bok J, Park JW. rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation. Nucleic Acids Research. PMID 32286627 DOI: 10.1093/Nar/Gkaa237  0.373
2019 Chaabane M, Williams RM, Stephens AT, Park JW. circDeep: Deep learning approach for circular RNA classification from other long non-coding RNA. Bioinformatics (Oxford, England). PMID 31268128 DOI: 10.1093/Bioinformatics/Btz537  0.353
2019 Harrison BJ, Park JW, Gomes C, Petruska JC, Sapio MR, Iadarola MJ, Chariker JH, Rouchka EC. Detection of Differentially Expressed Cleavage Site Intervals Within 3' Untranslated Regions Using CSI-UTR Reveals Regulated Interaction Motifs. Frontiers in Genetics. 10: 182. PMID 30915105 DOI: 10.3389/Fgene.2019.00182  0.399
2018 Teng Y, Ren Y, Sayed M, Hu X, Lei C, Kumar A, Hutchins E, Mu J, Deng Z, Luo C, Sundaram K, Sriwastva MK, Zhang L, Hsieh M, Reiman R, ... ... Park JW, et al. Plant-Derived Exosomal MicroRNAs Shape the Gut Microbiota. Cell Host & Microbe. 24: 637-652.e8. PMID 30449315 DOI: 10.1016/J.Chom.2018.10.001  0.308
2016 Zhou R, Park JW, Chun RF, Lisse TS, Garcia AJ, Zavala K, Sea JL, Lu ZX, Xu J, Xing Y, Adams JS, Hewison M. Concerted effects of heterogeneous nuclear ribonucleoprotein C1/C2 to control vitamin D-directed gene transcription and RNA splicing in human bone cells. Nucleic Acids Research. PMID 27672039 DOI: 10.1093/Nar/Gkw851  0.329
2016 Lin L, Park JW, Ramachandran S, Zhang Y, Tseng YT, Shen S, Waldvogel HJ, Curtis MA, Faull RL, Troncoso JC, Ross CA, Davidson BL, Xing Y. Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease. Human Molecular Genetics. PMID 27378699 DOI: 10.1093/Hmg/Ddw187  0.334
2016 Park JW, Jung S, Rouchka EC, Tseng YT, Xing Y. rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic Acids Research. PMID 27174931 DOI: 10.1093/Nar/Gkw410  0.39
2016 Cieply B, Park JW, Nakauka-Ddamba A, Bebee TW, Guo Y, Shang X, Lengner CJ, Xing Y, Carstens RP. Multiphasic and Dynamic Changes in Alternative Splicing during Induction of Pluripotency Are Coordinated by Numerous RNA-Binding Proteins. Cell Reports. PMID 27050523 DOI: 10.1016/J.Celrep.2016.03.025  0.39
2016 Yang Y, Park JW, Bebee TW, Warzecha CC, Guo Y, Shang X, Xing Y, Carstens RP. Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during the epithelial to mesenchymal transition. Molecular and Cellular Biology. PMID 27044866 DOI: 10.1128/Mcb.00019-16  0.33
2016 Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome. Nucleic Acids Research. PMID 26896798 DOI: 10.1093/Nar/Gkw088  0.344
2016 Lin L, Jiang P, Park JW, Wang J, Lu ZX, Lam MP, Ping P, Xing Y. The contribution of Alu exons to the human proteome. Genome Biology. 17: 15. PMID 26821878 DOI: 10.1186/S13059-016-0876-5  0.302
2015 Stein S, Lu ZX, Bahrami-Samani E, Park JW, Xing Y. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes. Nucleic Acids Research. PMID 26578562 DOI: 10.1093/Nar/Gkv1099  0.363
2015 Bebee TW, Park JW, Sheridan KI, Warzecha CC, Cieply BW, Rohacek AM, Xing Y, Carstens RP. The splicing regulators Esrp1 and Esrp2 direct an epithelial splicing program essential for mammalian development. Elife. 4. PMID 26371508 DOI: 10.7554/Elife.08954  0.319
2015 Lu ZX, Huang Q, Park JW, Shen S, Lin L, Tokheim CJ, Henry MD, Xing Y. Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization. Molecular Cancer Research : McR. 13: 305-18. PMID 25274489 DOI: 10.1158/1541-7786.Mcr-14-0366  0.339
2014 Shen S, Park JW, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proceedings of the National Academy of Sciences of the United States of America. 111: E5593-601. PMID 25480548 DOI: 10.1073/Pnas.1419161111  0.378
2014 Guo R, Zheng L, Park JW, Lv R, Chen H, Jiao F, Xu W, Mu S, Wen H, Qiu J, Wang Z, Yang P, Wu F, Hui J, Fu X, et al. BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing. Molecular Cell. 56: 298-310. PMID 25263594 DOI: 10.1016/J.Molcel.2014.08.022  0.341
2014 Tokheim C, Park JW, Xing Y. PrimerSeq: Design and visualization of RT-PCR primers for alternative splicing using RNA-seq data. Genomics, Proteomics & Bioinformatics. 12: 105-9. PMID 24747190 DOI: 10.1016/J.Gpb.2014.04.001  0.373
2013 Zhao K, Lu ZX, Park JW, Zhou Q, Xing Y. GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data. Genome Biology. 14: R74. PMID 23876401 DOI: 10.1186/Gb-2013-14-7-R74  0.36
2013 Park JW, Tokheim C, Shen S, Xing Y. Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS. Methods in Molecular Biology (Clifton, N.J.). 1038: 171-9. PMID 23872975 DOI: 10.1007/978-1-62703-514-9_10  0.389
2012 Dittmar KA, Jiang P, Park JW, Amirikian K, Wan J, Shen S, Xing Y, Carstens RP. Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing. Molecular and Cellular Biology. 32: 1468-82. PMID 22354987 DOI: 10.1128/Mcb.06536-11  0.401
2012 Shen S, Park JW, Huang J, Dittmar KA, Lu ZX, Zhou Q, Carstens RP, Xing Y. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Research. 40: e61. PMID 22266656 DOI: 10.1093/Nar/Gkr1291  0.382
Show low-probability matches.