Stanca M. Ciupe, Ph.D. - Publications

2005 University of Michigan, Ann Arbor, Ann Arbor, MI 
Mathematics, General

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Forde JE, Ciupe SM. Quantification of the Tradeoff between Test Sensitivity and Test Frequency in a COVID-19 Epidemic-A Multi-Scale Modeling Approach. Viruses. 13. PMID 33799660 DOI: 10.3390/v13030457  1
2021 Kuchinsky SC, Frere F, Heitzman-Breen N, Golden J, Vázquez A, Honaker CF, Siegel PB, Ciupe SM, LeRoith T, Duggal NK. Pathogenesis and shedding of Usutu virus in juvenile chickens. Emerging Microbes & Infections. 1-40. PMID 33769213 DOI: 10.1080/22221751.2021.1908850  0.01
2021 Ciupe SM, Boribong BP, Kadelka S, Jones CN. Bistable Mathematical Model of Neutrophil Migratory Patterns After LPS-Induced Epigenetic Reprogramming. Frontiers in Genetics. 12: 633963. PMID 33708241 DOI: 10.3389/fgene.2021.633963  0.01
2021 Ciupe SM, Vaidya NK, Forde JE. Early events in hepatitis B infection: the role of inoculum dose. Proceedings. Biological Sciences. 288: 20202715. PMID 33563115 DOI: 10.1098/rspb.2020.2715  1
2021 Kadelka S, Dahari H, Ciupe SM. Understanding the antiviral effects of RNAi-based therapy in HBeAg-positive chronic hepatitis B infection. Scientific Reports. 11: 200. PMID 33420293 DOI: 10.1038/s41598-020-80594-6  0.01
2020 Erwin S, Childs LM, Ciupe SM. Mathematical model of broadly reactive plasma cell production. Scientific Reports. 10: 3935. PMID 32127549 DOI: 10.1038/S41598-020-60316-8  0.01
2019 Kadelka S, Ciupe SM. Mathematical investigation of HBeAg seroclearance. Mathematical Biosciences and Engineering : Mbe. 16: 7616-7658. PMID 31698631 DOI: 10.3934/Mbe.2019382  0.01
2018 Kaderali L, Theis F, Ganusov VV, Ciupe SM, Mehr R, Ribeiro RM, Hernandez-Vargas EA. Editorial: Integrative Computational Systems Biology Approaches in Immunology and Medicine. Frontiers in Microbiology. 9: 3338. PMID 30728819 DOI: 10.3389/Fmicb.2018.03338  1
2018 Kadelka S, Boribong BP, Li L, Ciupe SM. Modeling the Bistable Dynamics of the Innate Immune System. Bulletin of Mathematical Biology. PMID 30387078 DOI: 10.1007/S11538-018-0527-Y  0.01
2018 Ciupe SM. Modeling the dynamics of hepatitis B infection, immunity, and drug therapy. Immunological Reviews. 285: 38-54. PMID 30129194 DOI: 10.1111/Imr.12686  0.01
2018 Ciupe SM, Miller CJ, Forde JE. A Bistable Switch in Virus Dynamics Can Explain the Differences in Disease Outcome Following SIV Infections in Rhesus Macaques. Frontiers in Microbiology. 9: 1216. PMID 29930544 DOI: 10.3389/Fmicb.2018.01216  1
2018 Nikin-Beers R, Blackwood JC, Childs LM, Ciupe SM. Unraveling within-host signatures of dengue infection at the population level. Journal of Theoretical Biology. PMID 29522728 DOI: 10.1016/J.Jtbi.2018.03.004  1
2017 Ciupe SM, Heffernan JM. In-host modeling. Infectious Disease Modelling. 2: 188-202. PMID 29928736 DOI: 10.1016/J.Idm.2017.04.002  0.01
2017 Dorratoltaj N, Nikin-Beers R, Ciupe SM, Eubank SG, Abbas KM. Multi-scale immunoepidemiological modeling of within-host and between-host HIV dynamics: systematic review of mathematical models. Peerj. 5: e3877. PMID 28970973 DOI: 10.7717/Peerj.3877  1
2017 Carracedo Rodriguez A, Chung M, Ciupe SM. Understanding the Complex Patterns Observed during Hepatitis B Virus Therapy. Viruses. 9. PMID 28534812 DOI: 10.3390/V9050117  0.01
2017 Nikin-Beers R, Ciupe SM. Modelling original antigenic sin in dengue viral infection. Mathematical Medicine and Biology : a Journal of the Ima. PMID 28339786 DOI: 10.1093/Imammb/Dqx002  1
2017 Erwin S, Ciupe SM. Germinal center dynamics during acute and chronic infection. Mathematical Biosciences and Engineering : Mbe. 14: 655-671. PMID 28092957 DOI: 10.3934/Mbe.2017037  0.01
2017 Verma M, Erwin S, Abedi V, Hontecillas R, Hoops S, Leber A, Bassaganya-Riera J, Ciupe SM. Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa. Plos One. 12: e0168133. PMID 28060843 DOI: 10.1371/Journal.Pone.0168133  0.01
2017 Dorratoltaj N, Ciupe S, Nikin-Beers R, Eubank S, Pellegrino P, Williams I, Borrow P, Abbas K. Viral and immune system dynamics of HIV-1, CD4+ T cells and macrophages during the acute, clinically latent and late phases of HIV infection F1000research. 6. DOI: 10.7490/F1000Research.1113598.1  1
2016 Leber A, Abedi V, Hontecillas R, Viladomiu M, Hoops S, Ciupe S, Caughman J, Andrew T, Bassaganya-Riera J. Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection. Journal of Theoretical Biology. PMID 26947272 DOI: 10.1016/J.Jtbi.2016.02.036  0.01
2016 Dorratoltaj N, Ciupe S, Eubank S, Bassaganya-Riera J, Rahmandad H, O'Dell M, Abbas K. Modeling within host dynamics of HIV infection and HAART interruptions F1000research. 5. DOI: 10.7490/F1000Research.1111698.1  0.01
2016 Dorratoltaj N, Ciupe S, Eubank S, Bassaganya-Riera J, Rahmandad H, O'Dell M, Abbas K. Mathematical modeling of HIV viral dynamics and immune response during treatment interruptions F1000research. 5. DOI: 10.7490/F1000Research.1111696.1  0.01
2016 Dorratoltaj N, Bassaganya-Riera J, Ciupe S, Eubank S, O’Dell M, Rahmandad H, Abbas K. Mathematical modeling of HIV viral dynamics and immune response during antiretroviral treatment interruptions F1000research. 5. DOI: 10.7490/F1000Research.1111644.1  0.01
2016 Forde JE, Ciupe SM, Cintron-Arias A, Lenhart S. Optimal control of drug therapy in a hepatitis B model Applied Sciences (Switzerland). 6. DOI: 10.3390/App6080219  1
2015 Nikin-Beers R, Ciupe SM. The role of antibody in enhancing dengue virus infection. Mathematical Biosciences. 263: 83-92. PMID 25707916 DOI: 10.1016/J.Mbs.2015.02.004  1
2015 Ciupe SM. Mathematical model of multivalent virus-antibody complex formation in humans following acute and chronic HIV infections. Journal of Mathematical Biology. 71: 513-32. PMID 25190279 DOI: 10.1007/S00285-014-0826-3  1
2014 Ciupe SM, Ribeiro RM, Perelson AS. Antibody responses during hepatitis B viral infection. Plos Computational Biology. 10: e1003730. PMID 25078553 DOI: 10.1371/Journal.Pcbi.1003730  1
2014 Ciupe SM, Schwartz EJ. Understanding virus-host dynamics following EIAV infection in SCID horses. Journal of Theoretical Biology. 343: 1-8. PMID 24252283 DOI: 10.1016/J.Jtbi.2013.11.003  1
2013 Ciupe SM, Devlin BH, Markert ML, Kepler TB. Quantification of total T-cell receptor diversity by flow cytometry and spectratyping. Bmc Immunology. 14: 35. PMID 23914737 DOI: 10.1186/1471-2172-14-35  1
2012 Ciupe SM, Hews S. Mathematical models of e-antigen mediated immune tolerance and activation following prenatal HBV infection. Plos One. 7: e39591. PMID 22768303 DOI: 10.1371/Journal.Pone.0039591  1
2012 Forde J, Volpe JM, Ciupe SM. Latently infected cell activation: a way to reduce the size of the HIV reservoir? Bulletin of Mathematical Biology. 74: 1651-72. PMID 22562387 DOI: 10.1007/S11538-012-9729-X  1
2011 Ciupe SM, De Leenheer P, Kepler TB. Paradoxical suppression of poly-specific broadly neutralizing antibodies in the presence of strain-specific neutralizing antibodies following HIV infection. Journal of Theoretical Biology. 277: 55-66. PMID 21315731 DOI: 10.1016/J.Jtbi.2011.01.050  1
2011 Ciupe SM, Catllá AJ, Forde J, Schaeffer DG. Dynamics of hepatitis b virus infection: What causes viral clearance? Mathematical Population Studies. 18: 87-105. DOI: 10.1080/08898480.2011.564563  1
2009 Nelson P, Smith N, Ciupe S, Zou W, Omenn GS, Pietropaolo M. Modeling dynamic changes in type 1 diabetes progression: quantifying beta-cell variation after the appearance of islet-specific autoimmune responses. Mathematical Biosciences and Engineering : Mbe. 6: 753-78. PMID 19835428 DOI: 10.3934/Mbe.2009.6.753  0.01
2009 Ciupe SM, Devlin BH, Markert ML, Kepler TB. The dynamics of T-cell receptor repertoire diversity following thymus transplantation for DiGeorge anomaly. Plos Computational Biology. 5: e1000396. PMID 19521511 DOI: 10.1371/Journal.Pcbi.1000396  1
2007 Ciupe SM, Ribeiro RM, Nelson PW, Perelson AS. Modeling the mechanisms of acute hepatitis B virus infection. Journal of Theoretical Biology. 247: 23-35. PMID 17428501 DOI: 10.1016/J.Jtbi.2007.02.017  1
2007 Ciupe SM, Ribeiro RM, Nelson PW, Dusheiko G, Perelson AS. The role of cells refractory to productive infection in acute hepatitis B viral dynamics. Proceedings of the National Academy of Sciences of the United States of America. 104: 5050-5. PMID 17360406 DOI: 10.1073/Pnas.0603626104  1
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