| Year |
Citation |
Score |
| 2024 |
Cantó-Pastor A, Kajala K, Shaar-Moshe L, Manzano C, Timilsena P, De Bellis D, Gray S, Holbein J, Yang H, Mohammad S, Nirmal N, Suresh K, Ursache R, Mason GA, Gouran M, ... ... Bailey-Serres J, et al. A suberized exodermis is required for tomato drought tolerance. Nature Plants. PMID 38168610 DOI: 10.1038/s41477-023-01567-x |
0.531 |
|
| 2023 |
Jiang B, Zhong Z, Gu L, Zhang X, Wei J, Ye C, Lin G, Qu G, Xiang X, Wen C, Gateas M, Bailey-Serres J, Wang Q, He C, Wang X, et al. Light-induced LLPS of the CRY2/SPA1/FIO1 complex regulating mRNA methylation and chlorophyll homeostasis in Arabidopsis. Nature Plants. PMID 38066290 DOI: 10.1038/s41477-023-01580-0 |
0.317 |
|
| 2023 |
George J, Stegmann M, Monaghan J, Bailey-Serres J, Zipfel C. Arabidopsis translation initiation factor binding protein CBE1 negatively regulates accumulation of the NADPH oxidase RESPIRATORY BURST OXIDASE HOMOLOG D. The Journal of Biological Chemistry. 105018. PMID 37423301 DOI: 10.1016/j.jbc.2023.105018 |
0.324 |
|
| 2022 |
Reynoso MA, Borowsky AT, Pauluzzi GC, Yeung E, Zhang J, Formentin E, Velasco J, Cabanlit S, Duvenjian C, Prior MJ, Akmakjian GZ, Deal RB, Sinha NR, Brady SM, Girke T, ... Bailey-Serres J, et al. Gene regulatory networks shape developmental plasticity of root cell types under water extremes in rice. Developmental Cell. 57: 1177-1192.e6. PMID 35504287 DOI: 10.1016/j.devcel.2022.04.013 |
0.817 |
|
| 2021 |
Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, ... ... Bailey-Serres J, et al. Innovation, conservation, and repurposing of gene function in root cell type development. Cell. 184: 5070. PMID 34534466 DOI: 10.1016/j.cell.2021.08.032 |
0.484 |
|
| 2021 |
Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, ... ... Bailey-Serres J, et al. Innovation, conservation, and repurposing of gene function in root cell type development. Cell. PMID 34010619 DOI: 10.1016/j.cell.2021.04.024 |
0.548 |
|
| 2020 |
Schaarschmidt S, Fischer A, Lawas LMF, Alam R, Septiningsih EM, Bailey-Serres J, Jagadish SVK, Huettel B, Hincha DK, Zuther E. Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in L. International Journal of Molecular Sciences. 21. PMID 33142722 DOI: 10.3390/ijms21218148 |
0.663 |
|
| 2020 |
Alam R, Hummel M, Yeung E, Locke AM, Ignacio JCI, Baltazar MD, Jia Z, Ismail AM, Septiningsih EM, Bailey-Serres J. Flood resilience loci and interact in seedlings established underwater. Plant Direct. 4: e00240. PMID 32775950 DOI: 10.1002/pld3.240 |
0.801 |
|
| 2020 |
Bailey-Serres J, Voesenek LACJ. Genetic drivers of high-rise rice that survives deep floods. Nature. PMID 32669726 DOI: 10.1038/D41586-020-02059-0 |
0.318 |
|
| 2020 |
Chantarachot T, Sorenson RS, Hummel M, Ke H, Kettenburg AT, Chen D, Aiyetiwa K, Dehesh K, Eulgem T, Sieburth LE, Bailey-Serres J. DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs. Nature Plants. PMID 32483330 DOI: 10.1038/S41477-020-0681-8 |
0.819 |
|
| 2020 |
Akmakjian GZ, Bailey-Serres J. Nitrogen-responsive transcription factor kinetics meter plant growth. Proceedings of the National Academy of Sciences of the United States of America. 117: 13196-13198. PMID 32471951 DOI: 10.1073/Pnas.2007441117 |
0.355 |
|
| 2020 |
Lee TA, Bailey-Serres J. Conserved and nuanced hierarchy of gene regulatory response to hypoxia. The New Phytologist. PMID 31953954 DOI: 10.1111/nph.16437 |
0.798 |
|
| 2020 |
Bailey-Serres J, Zhai J, Seki M. The Dynamic Kaleidoscope of RNA Biology in Plants. Plant Physiology. 182: 1-9. PMID 31908318 DOI: 10.1104/Pp.19.01558 |
0.329 |
|
| 2019 |
Lee TA, Bailey-Serres J. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. The Plant Cell. 31: 2573-2595. PMID 33831153 DOI: 10.1105/tpc.19.00463 |
0.379 |
|
| 2019 |
Traubenik S, Reynoso MA, Hobecker KV, Lancia M, Hummel M, Rosen B, Town C, Bailey-Serres J, Blanco FA, Zanetti ME. Reprogramming of root cells during nitrogen-fixing symbiosis involves dynamic polysome association of coding and non-coding RNAs. The Plant Cell. PMID 31748328 DOI: 10.1105/Tpc.19.00647 |
0.464 |
|
| 2019 |
Reynoso MA, Kajala K, Bajic M, West DA, Pauluzzi G, Yao AI, Hatch K, Zumstein K, Woodhouse M, Rodriguez-Medina J, Sinha N, Brady SM, Deal RB, Bailey-Serres J. Evolutionary flexibility in flooding response circuitry in angiosperms. Science (New York, N.Y.). 365: 1291-1295. PMID 31604238 DOI: 10.1126/Science.Aax8862 |
0.804 |
|
| 2019 |
Lee TA, Bailey-Serres J. Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress. The Plant Cell. PMID 31519798 DOI: 10.1105/Tpc.19.00463 |
0.811 |
|
| 2019 |
Hartman S, Liu Z, van Veen H, Vicente J, Reinen E, Martopawiro S, Zhang H, van Dongen N, Bosman F, Bassel GW, Visser EJW, Bailey-Serres J, Theodoulou FL, Hebelstrup KH, Gibbs DJ, et al. Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress. Nature Communications. 10: 4020. PMID 31488841 DOI: 10.1038/S41467-019-12045-4 |
0.401 |
|
| 2019 |
Dedow LK, Bailey-Serres J. Searching for a Match: Structure, Function and Application of Sequence-Specific RNA-Binding Proteins. Plant & Cell Physiology. PMID 31329953 DOI: 10.1093/Pcp/Pcz072 |
0.801 |
|
| 2019 |
Yeung E, Bailey-Serres J, Sasidharan R. After The Deluge: Plant Revival Post-Flooding. Trends in Plant Science. PMID 30857921 DOI: 10.1016/j.tplants.2019.02.007 |
0.784 |
|
| 2018 |
Reynoso MA, Pauluzzi GC, Cabanlit S, Velasco J, Bazin J, Deal R, Brady S, Sinha N, Bailey-Serres J, Kajala K. Isolation of Nuclei in Tagged Cell Types (INTACT), RNA Extraction and Ribosomal RNA Degradation to Prepare Material for RNA-Seq. Bio-Protocol. 8: e2458. PMID 34286007 DOI: 10.21769/BioProtoc.2458 |
0.518 |
|
| 2018 |
Yeung E, van Veen H, Vashisht D, Sobral Paiva AL, Hummel M, Rankenberg T, Steffens B, Steffen-Heins A, Sauter M, de Vries M, Schuurink RC, Bazin J, Bailey-Serres J, Voesenek LACJ, Sasidharan R. A stress recovery signaling network for enhanced flooding tolerance in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29891679 DOI: 10.1073/Pnas.1803841115 |
0.784 |
|
| 2017 |
Maher KA, Bajic M, Kajala K, Reynoso M, Pauluzzi G, West D, Zumstein K, Woodhouse M, Bubb KL, Dorrity MW, Queitsch C, Bailey-Serres J, Sinha N, Brady SM, Deal R. Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules. The Plant Cell. PMID 29229750 DOI: 10.1105/Tpc.17.00581 |
0.806 |
|
| 2017 |
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, et al. The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiology. 175: 1499-1509. PMID 29208732 DOI: 10.1104/Pp.17.01490 |
0.317 |
|
| 2017 |
Chantarachot T, Bailey-Serres J. Polysomes, stress granules and processing bodies: a dynamic triumvirate controlling cytoplasmic mRNA fate and function. Plant Physiology. PMID 29158329 DOI: 10.1104/Pp.17.01468 |
0.432 |
|
| 2017 |
Locke AM, Barding GA, Sathnur S, Larive CK, Bailey-Serres J. Rice SUB1A constrains remodeling of the transcriptome and metabolome during submergence to facilitate post-submergence recovery. Plant, Cell & Environment. PMID 29094353 DOI: 10.1111/Pce.13094 |
0.793 |
|
| 2017 |
Bazin J, Baerenfaller K, Gosai SJ, Gregory BD, Crespi M, Bailey-Serres J. Global analysis of ribosome-associated noncoding RNAs unveils new modes of translational regulation. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087317 DOI: 10.1073/Pnas.1708433114 |
0.434 |
|
| 2017 |
Reynoso M, Pauluzzi G, Kajala K, Cabanlit S, Velasco J, Bazin J, Deal R, Sinha N, Brady SM, Bailey-Serres J. Nuclear transcriptomes at high resolution using retooled INTACT. Plant Physiology. PMID 28956755 DOI: 10.1104/Pp.17.00688 |
0.589 |
|
| 2017 |
Lee TA, Bailey-Serres J. Lighting the shadows: methods that expose nuclear and cytoplasmic gene regulatory control. Current Opinion in Biotechnology. 49: 29-34. PMID 28800418 DOI: 10.1016/J.Copbio.2017.07.010 |
0.797 |
|
| 2017 |
de Lorenzo L, Sorenson R, Bailey-Serres J, Hunt AG. Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia. The Plant Cell. PMID 28559476 DOI: 10.1105/Tpc.16.00746 |
0.832 |
|
| 2017 |
Bailey-Serres J, Ma W. Plant biology: An immunity boost combats crop disease. Nature. PMID 28514444 DOI: 10.1038/Nature22497 |
0.383 |
|
| 2017 |
Sasidharan R, Bailey-Serres J, Ashikari M, Atwell BJ, Colmer TD, Fagerstedt K, Fukao T, Geigenberger P, Hebelstrup KH, Hill RD, Holdsworth MJ, Ismail AM, Licausi F, Mustroph A, Nakazono M, et al. Community recommendations on terminology and procedures used in flooding and low oxygen stress research. The New Phytologist. PMID 28277605 DOI: 10.1111/Nph.14519 |
0.337 |
|
| 2017 |
Glenn W, Stone SE, Ho SH, Sweredoski MJ, Moradian A, Hess S, Bailey-Serres J, Tirrell DA. BONCAT enables time-resolved analysis of protein synthesis in native plant tissue. Plant Physiology. PMID 28104718 DOI: 10.1104/Pp.16.01762 |
0.393 |
|
| 2016 |
Zhao D, Hamilton JP, Hardigan M, Yin D, He T, Vaillancourt B, Reynoso M, Pauluzzi G, Funkhouser S, Cui Y, Bailey-Serres J, Jiang J, Buell CR, Jiang N. Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation. G3 (Bethesda, Md.). PMID 27852012 DOI: 10.1534/G3.116.036020 |
0.52 |
|
| 2016 |
Van Veen H, Vashisht D, Akman M, Girke T, Mustroph A, Reinen E, Hartman S, Kooiker M, van Tienderen P, Schranz ME, Bailey-Serres J, Voesenek LA, Sasidharan R. Transcriptomes of eight Arabidopsis thaliana accessions reveal core conserved, genotype- and organ-specific responses to flooding stress. Plant Physiology. PMID 27208254 DOI: 10.1104/Pp.16.00472 |
0.481 |
|
| 2015 |
Kretzschmar T, Pelayo MA, Trijatmiko KR, Gabunada LF, Alam R, Jimenez R, Mendioro MS, Slamet-Loedin IH, Sreenivasulu N, Bailey-Serres J, Ismail AM, Mackill DJ, Septiningsih EM. A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice. Nature Plants. 1: 15124. PMID 27250677 DOI: 10.1038/Nplants.2015.124 |
0.599 |
|
| 2015 |
Gasch P, Fundinger M, Müller JT, Lee T, Bailey-Serres J, Mustroph A. Redundant ERF-VII transcription factors bind an evolutionarily-conserved cis-motif to regulate hypoxia-responsive gene expression in Arabidopsis. The Plant Cell. PMID 26668304 DOI: 10.1105/Tpc.15.00866 |
0.803 |
|
| 2015 |
Hummel M, Dobrenel T, Cordewener JJ, Davanture M, Meyer C, Smeekens SJ, Bailey-Serres J, America TA, Hanson J. Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes. Journal of Proteomics. 128: 436-49. PMID 26232565 DOI: 10.1016/J.Jprot.2015.07.004 |
0.37 |
|
| 2015 |
Bazin J, Bailey-Serres J. Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis. Frontiers in Plant Science. 6: 400. PMID 26106399 DOI: 10.3389/Fpls.2015.00400 |
0.422 |
|
| 2015 |
Browning KS, Bailey-Serres J. Mechanism of cytoplasmic mRNA translation. The Arabidopsis Book / American Society of Plant Biologists. 13: e0176. PMID 26019692 DOI: 10.1199/Tab.0176 |
0.493 |
|
| 2015 |
Sorenson R, Bailey-Serres J. Rapid immunopurification of ribonucleoprotein complexes of plants. Methods in Molecular Biology (Clifton, N.J.). 1284: 209-19. PMID 25757774 DOI: 10.1007/978-1-4939-2444-8_10 |
0.809 |
|
| 2015 |
Reynoso MA, Juntawong P, Lancia M, Blanco FA, Bailey-Serres J, Zanetti ME. Translating Ribosome Affinity Purification (TRAP) followed by RNA sequencing technology (TRAP-SEQ) for quantitative assessment of plant translatomes. Methods in Molecular Biology (Clifton, N.J.). 1284: 185-207. PMID 25757773 DOI: 10.1007/978-1-4939-2444-8_9 |
0.769 |
|
| 2015 |
Juntawong P, Hummel M, Bazin J, Bailey-Serres J. Ribosome profiling: a tool for quantitative evaluation of dynamics in mRNA translation. Methods in Molecular Biology (Clifton, N.J.). 1284: 139-73. PMID 25757771 DOI: 10.1007/978-1-4939-2444-8_7 |
0.784 |
|
| 2015 |
Mickelbart MV, Hasegawa PM, Bailey-Serres J. Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability. Nature Reviews. Genetics. 16: 237-51. PMID 25752530 DOI: 10.1038/Nrg3901 |
0.357 |
|
| 2014 |
Giuntoli B, Lee SC, Licausi F, Kosmacz M, Oosumi T, van Dongen JT, Bailey-Serres J, Perata P. A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis. Plos Biology. 12: e1001950. PMID 25226037 DOI: 10.1371/Journal.Pbio.1001950 |
0.626 |
|
| 2014 |
Ron M, Kajala K, Pauluzzi G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal RB, Bailey-Serres J, Brady SM. Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model. Plant Physiology. 166: 455-69. PMID 24868032 DOI: 10.1104/Pp.114.239392 |
0.611 |
|
| 2014 |
Lin SY, Chen PW, Chuang MH, Juntawong P, Bailey-Serres J, Jauh GY. Profiling of translatomes of in vivo-grown pollen tubes reveals genes with roles in micropylar guidance during pollination in Arabidopsis. The Plant Cell. 26: 602-18. PMID 24532595 DOI: 10.1105/Tpc.113.121335 |
0.762 |
|
| 2014 |
Sorenson R, Bailey-Serres J. Selective mRNA sequestration by OLIGOURIDYLATE-BINDING PROTEIN 1 contributes to translational control during hypoxia in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: 2373-8. PMID 24469793 DOI: 10.1073/Pnas.1314851111 |
0.824 |
|
| 2014 |
Mustroph A, Barding GA, Kaiser KA, Larive CK, Bailey-Serres J. Characterization of distinct root and shoot responses to low-oxygen stress in Arabidopsis with a focus on primary C- and N-metabolism. Plant, Cell & Environment. 37: 2366-80. PMID 24450922 DOI: 10.1111/Pce.12282 |
0.797 |
|
| 2014 |
Juntawong P, Girke T, Bazin J, Bailey-Serres J. Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 111: E203-12. PMID 24367078 DOI: 10.1073/Pnas.1317811111 |
0.808 |
|
| 2014 |
Ron M, Kajala K, Pauluzzui G, Wang D, Reynoso MA, Zumstein K, Garcha J, Winte S, Masson H, Inagaki S, Federici F, Sinha N, Deal R, Bailey-Serres J, Brady S. A rapid method for translating molecular tools for crop species F1000research. 5. DOI: 10.7490/F1000Research.1097119.1 |
0.508 |
|
| 2014 |
Sorenson R, Bailey-Serres J. Selective mRNA translation tailors low oxygen energetics Plant Cell Monographs. 21: 95-115. DOI: 10.1007/978-3-7091-1254-0_6 |
0.841 |
|
| 2013 |
van Veen H, Mustroph A, Barding GA, Vergeer-van Eijk M, Welschen-Evertman RAM, Pedersen O, Visser EJW, Larive CK, Pierik R, Bailey-Serres J, Voesenek LACJ, Sasidharan R. Two Rumex species from contrasting hydrological niches regulate flooding tolerance through distinct mechanisms Plant Cell. 25: 4691-4707. PMID 24285788 DOI: 10.1105/Tpc.113.119016 |
0.779 |
|
| 2013 |
Voesenek LACJ, Bailey-Serres J. Flooding tolerance: O2 sensing and survival strategies Current Opinion in Plant Biology. 16: 647-653. PMID 23830867 DOI: 10.1016/J.Pbi.2013.06.008 |
0.418 |
|
| 2013 |
Juntawong P, Sorenson R, Bailey-Serres J. Cold shock protein 1 chaperones mRNAs during translation in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 74: 1016-28. PMID 23551487 DOI: 10.1111/Tpj.12187 |
0.823 |
|
| 2013 |
Luhua S, Hegie A, Suzuki N, Shulaev E, Luo X, Cenariu D, Ma V, Kao S, Lim J, Gunay MB, Oosumi T, Lee SC, Harper J, Cushman J, Gollery M, ... ... Bailey-Serres J, et al. Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening. Physiologia Plantarum. 148: 322-33. PMID 23517122 DOI: 10.1111/Ppl.12013 |
0.569 |
|
| 2013 |
Bailey-Serres J. Microgenomics: Genome-scale, cell-specific monitoring of multiple gene regulation tiers Annual Review of Plant Biology. 64: 293-325. PMID 23451787 DOI: 10.1146/Annurev-Arplant-050312-120035 |
0.461 |
|
| 2013 |
Mustroph A, Zanetti ME, Girke T, Bailey-Serres J. Isolation and analysis of mRNAs from specific cell types of plants by ribosome immunopurification. Methods in Molecular Biology (Clifton, N.J.). 959: 277-302. PMID 23299683 DOI: 10.1007/978-1-62703-221-6_19 |
0.422 |
|
| 2013 |
Barding GA, Béni S, Fukao T, Bailey-Serres J, Larive CK. Comparison of GC-MS and NMR for metabolite profiling of rice subjected to submergence stress. Journal of Proteome Research. 12: 898-909. PMID 23205590 DOI: 10.1021/Pr300953K |
0.75 |
|
| 2013 |
Moghe GD, Lehti-Shiu MD, Seddon AE, Yin S, Chen Y, Juntawong P, Brandizzi F, Bailey-Serres J, Shiu SH. Characteristics and significance of intergenic polyadenylated RNA transcription in Arabidopsis. Plant Physiology. 161: 210-24. PMID 23132786 DOI: 10.1104/Pp.112.205245 |
0.788 |
|
| 2013 |
Reynoso MA, Blanco FA, Bailey-Serres J, Crespi M, Zanetti ME. Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection in Medicago truncatula. The Plant Journal : For Cell and Molecular Biology. 73: 289-301. PMID 23050939 DOI: 10.1111/Tpj.12033 |
0.436 |
|
| 2012 |
Bailey-Serres J, Lee SC, Brinton E. Waterproofing crops: effective flooding survival strategies. Plant Physiology. 160: 1698-709. PMID 23093359 DOI: 10.1104/Pp.112.208173 |
0.753 |
|
| 2012 |
Fukao T, Yeung E, Bailey-Serres J. The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice. Plant Physiology. 160: 1795-807. PMID 23073696 DOI: 10.1104/Pp.112.207738 |
0.803 |
|
| 2012 |
Juntawong P, Bailey-Serres J. Dynamic Light Regulation of Translation Status in Arabidopsis thaliana. Frontiers in Plant Science. 3: 66. PMID 22645595 DOI: 10.3389/Fpls.2012.00066 |
0.793 |
|
| 2012 |
Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK. Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice. Plant Physiology. 159: 1111-24. PMID 22566494 DOI: 10.1104/Pp.112.194928 |
0.794 |
|
| 2012 |
Bailey-Serres J, Fukao T, Gibbs DJ, Holdsworth MJ, Lee SC, Licausi F, Perata P, Voesenek LA, van Dongen JT. Making sense of low oxygen sensing. Trends in Plant Science. 17: 129-38. PMID 22280796 DOI: 10.1016/J.Tplants.2011.12.004 |
0.566 |
|
| 2012 |
Chang R, Jang CJ, Branco-Price C, Nghiem P, Bailey-Serres J. Transient MPK6 activation in response to oxygen deprivation and reoxygenation is mediated by mitochondria and aids seedling survival in Arabidopsis. Plant Molecular Biology. 78: 109-22. PMID 22086331 DOI: 10.1007/S11103-011-9850-5 |
0.796 |
|
| 2012 |
Barding GA, Fukao T, Béni S, Bailey-Serres J, Larive CK. Differential metabolic regulation governed by the rice SUB1A gene during submergence stress and identification of alanylglycine by 1H NMR spectroscopy. Journal of Proteome Research. 11: 320-30. PMID 22017194 DOI: 10.1021/Pr200919B |
0.761 |
|
| 2011 |
Gibbs DJ, Lee SC, Isa NM, Gramuglia S, Fukao T, Bassel GW, Correia CS, Corbineau F, Theodoulou FL, Bailey-Serres J, Holdsworth MJ. Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants. Nature. 479: 415-8. PMID 22020279 DOI: 10.1038/Nature10534 |
0.612 |
|
| 2011 |
Peña-Castro JM, van Zanten M, Lee SC, Patel MR, Voesenek LA, Fukao T, Bailey-Serres J. Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism. The Plant Journal : For Cell and Molecular Biology. 67: 434-46. PMID 21481028 DOI: 10.1111/J.1365-313X.2011.04605.X |
0.584 |
|
| 2011 |
Fukao T, Yeung E, Bailey-Serres J. The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice. The Plant Cell. 23: 412-27. PMID 21239643 DOI: 10.1105/Tpc.110.080325 |
0.808 |
|
| 2011 |
Lee SC, Mustroph A, Sasidharan R, Vashisht D, Pedersen O, Oosumi T, Voesenek LA, Bailey-Serres J. Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia. The New Phytologist. 190: 457-71. PMID 21231933 DOI: 10.1111/J.1469-8137.2010.03590.X |
0.553 |
|
| 2011 |
Vashisht D, Hesselink A, Pierik R, Ammerlaan JM, Bailey-Serres J, Visser EJ, Pedersen O, van Zanten M, Vreugdenhil D, Jamar DC, Voesenek LA, Sasidharan R. Natural variation of submergence tolerance among Arabidopsis thaliana accessions. The New Phytologist. 190: 299-310. PMID 21108648 DOI: 10.1111/J.1469-8137.2010.03552.X |
0.376 |
|
| 2010 |
Bailey-Serres J, Voesenek LA. Life in the balance: a signaling network controlling survival of flooding. Current Opinion in Plant Biology. 13: 489-94. PMID 20813578 DOI: 10.1016/J.Pbi.2010.08.002 |
0.376 |
|
| 2010 |
Mustroph A, Bailey-Serres J. The Arabidopsis translatome cell-specific mRNA atlas: Mining suberin and cutin lipid monomer biosynthesis genes as an example for data application. Plant Signaling & Behavior. 5: 320-4. PMID 20220312 DOI: 10.4161/Psb.5.3.11187 |
0.414 |
|
| 2010 |
Jung KH, Seo YS, Walia H, Cao P, Fukao T, Canlas PE, Amonpant F, Bailey-Serres J, Ronald PC. The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors. Plant Physiology. 152: 1674-92. PMID 20107022 DOI: 10.1104/Pp.109.152157 |
0.439 |
|
| 2010 |
Mustroph A, Lee SC, Oosumi T, Zanetti ME, Yang H, Ma K, Yaghoubi-Masihi A, Fukao T, Bailey-Serres J. Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses. Plant Physiology. 152: 1484-500. PMID 20097791 DOI: 10.1104/Pp.109.151845 |
0.649 |
|
| 2010 |
Bailey-Serres J, Fukao T, Ronald P, Ismail A, Heuer S, Mackill D. Submergence tolerant rice: SUB1's journey from landrace to modern cultivar Rice. 3: 138-147. DOI: 10.1007/S12284-010-9048-5 |
0.37 |
|
| 2009 |
Mustroph A, Zanetti ME, Jang CJ, Holtan HE, Repetti PP, Galbraith DW, Girke T, Bailey-Serres J. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 106: 18843-8. PMID 19843695 DOI: 10.1073/Pnas.0906131106 |
0.449 |
|
| 2009 |
Bailey-Serres J, Sorenson R, Juntawong P. Getting the message across: cytoplasmic ribonucleoprotein complexes. Trends in Plant Science. 14: 443-53. PMID 19616989 DOI: 10.1016/J.Tplants.2009.05.004 |
0.818 |
|
| 2009 |
Mustroph A, Juntawong P, Bailey-Serres J. Isolation of plant polysomal mRNA by differential centrifugation and ribosome immunopurification methods. Methods in Molecular Biology (Clifton, N.J.). 553: 109-26. PMID 19588103 DOI: 10.1007/978-1-60327-563-7_6 |
0.772 |
|
| 2009 |
Fukao T, Harris T, Bailey-Serres J. Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Annals of Botany. 103: 143-50. PMID 18824474 DOI: 10.1093/Aob/Mcn172 |
0.319 |
|
| 2008 |
Fukao T, Bailey-Serres J. Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of the National Academy of Sciences of the United States of America. 105: 16814-9. PMID 18936491 DOI: 10.1073/Pnas.0807821105 |
0.315 |
|
| 2008 |
Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J. Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 56: 743-55. PMID 18665916 DOI: 10.1111/J.1365-313X.2008.03642.X |
0.819 |
|
| 2008 |
Van Breusegem F, Bailey-Serres J, Mittler R. Unraveling the tapestry of networks involving reactive oxygen species in plants. Plant Physiology. 147: 978-84. PMID 18612075 DOI: 10.1104/Pp.108.122325 |
0.326 |
|
| 2008 |
Bailey-Serres J, Voesenek LACJ. Flooding stress: Acclimations and genetic diversity Annual Review of Plant Biology. 59: 313-339. PMID 18444902 DOI: 10.1146/Annurev.Arplant.59.032607.092752 |
0.364 |
|
| 2008 |
Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu JK, Cushman JC, Gollery M, Girke T. Annotating genes of known and unknown function by large-scale coexpression analysis. Plant Physiology. 147: 41-57. PMID 18354039 DOI: 10.1104/Pp.108.117366 |
0.398 |
|
| 2008 |
Fukao T, Bailey-Serres J. Ethylene-A key regulator of submergence responses in rice Plant Science. 175: 43-51. DOI: 10.1016/J.Plantsci.2007.12.002 |
0.399 |
|
| 2006 |
Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC, Mackill DJ. Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature. 442: 705-8. PMID 16900200 DOI: 10.1038/Nature04920 |
0.379 |
|
| 2006 |
Gollery M, Harper J, Cushman J, Mittler T, Girke T, Zhu JK, Bailey-Serres J, Mittler R. What makes species unique? The contribution of proteins with obscure features. Genome Biology. 7: R57. PMID 16859532 DOI: 10.1186/Gb-2006-7-7-R57 |
0.31 |
|
| 2006 |
Fukao T, Xu K, Ronald PC, Bailey-Serres J. A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell. 18: 2021-34. PMID 16816135 DOI: 10.1105/Tpc.106.043000 |
0.414 |
|
| 2006 |
Bailey-Serres J, Mittler R. The roles of reactive oxygen species in plant cells. Plant Physiology. 141: 311. PMID 16760480 DOI: 10.1104/Pp.104.900191 |
0.353 |
|
| 2005 |
Branco-Price C, Kawaguchi R, Ferreira RB, Bailey-Serres J. Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. Annals of Botany. 96: 647-60. PMID 16081496 DOI: 10.1093/Aob/Mci217 |
0.627 |
|
| 2005 |
Bailey-Serres J, Chang R. Sensing and signalling in response to oxygen deprivation in plants and other organisms. Annals of Botany. 96: 507-18. PMID 16051633 DOI: 10.1093/Aob/Mci206 |
0.784 |
|
| 2005 |
Zanetti ME, Chang IF, Gong F, Galbraith DW, Bailey-Serres J. Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression. Plant Physiology. 138: 624-35. PMID 15955926 DOI: 10.1104/Pp.105.059477 |
0.692 |
|
| 2005 |
Chang IF, Szick-Miranda K, Pan S, Bailey-Serres J. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiology. 137: 848-62. PMID 15734919 DOI: 10.1104/Pp.104.053637 |
0.619 |
|
| 2005 |
Kawaguchi R, Bailey-Serres J. mRNA sequence features that contribute to translational regulation in Arabidopsis. Nucleic Acids Research. 33: 955-65. PMID 15716313 DOI: 10.1093/Nar/Gki240 |
0.617 |
|
| 2004 |
Fukao T, Bailey-Serres J. Plant responses to hypoxia--is survival a balancing act? Trends in Plant Science. 9: 449-56. PMID 15337495 DOI: 10.1016/J.Tplants.2004.07.005 |
0.408 |
|
| 2004 |
Kawaguchi R, Girke T, Bray EA, Bailey-Serres J. Differential mRNA translation contributes to gene regulation under non-stress and dehydration stress conditions in Arabidopsis thaliana. The Plant Journal : For Cell and Molecular Biology. 38: 823-39. PMID 15144383 DOI: 10.1111/J.1365-313X.2004.02090.X |
0.653 |
|
| 2003 |
Williams AJ, Werner-Fraczek J, Chang IF, Bailey-Serres J. Regulated phosphorylation of 40S ribosomal protein S6 in root tips of maize. Plant Physiology. 132: 2086-97. PMID 12913163 DOI: 10.1104/Pp.103.022749 |
0.718 |
|
| 2003 |
Baxter-Burrell A, Chang R, Springer P, Bailey-Serres J. Gene and enhancer trap transposable elements reveal oxygen deprivation-regulated genes and their complex patterns of expression in Arabidopsis. Annals of Botany. 91: 129-41. PMID 12509334 DOI: 10.1093/Aob/Mcf119 |
0.784 |
|
| 2003 |
Kawaguchi R, Williams AJ, Bray EA, Bailey-Serres J. Water-deficit-induced translational control in Nicotiana tabacum Plant, Cell and Environment. 26: 221-229. DOI: 10.1046/J.1365-3040.2003.00952.X |
0.59 |
|
| 2003 |
Szick-Miranda K, Jayachandran S, Tam A, Werner-Fraczek J, Williams AJ, Bailey-Serres J. Evaluation of translational control mechanisms in response to oxygen deprivation in Maize Russian Journal of Plant Physiology. 50: 774-786. DOI: 10.1023/B:Rupp.0000003275.97021.2B |
0.702 |
|
| 2002 |
Kawaguchi R, Bailey-Serres J. Regulation of translational initiation in plants. Current Opinion in Plant Biology. 5: 460-5. PMID 12183186 DOI: 10.1016/S1369-5266(02)00290-X |
0.646 |
|
| 2002 |
Baxter-Burrell A, Yang Z, Springer PS, Bailey-Serres J. RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance. Science (New York, N.Y.). 296: 2026-8. PMID 12065837 DOI: 10.1126/Science.1071505 |
0.798 |
|
| 2001 |
Barakat A, Szick-Miranda K, Chang IF, Guyot R, Blanc G, Cooke R, Delseny M, Bailey-Serres J. The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. Plant Physiology. 127: 398-415. PMID 11598216 DOI: 10.1104/Pp.010265 |
0.636 |
|
| 1999 |
Manjunath S, Williams AJ, Bailey-Serres J. Oxygen deprivation stimulates Ca2+-mediated phosphorylation of mRNA cap-binding protein elF4E in maize roots Plant Journal. 19: 21-30. PMID 10417723 DOI: 10.1046/J.1365-313X.1999.00489.X |
0.618 |
|
| 1999 |
Bailey-Serres J. Selective translation of cytoplasmic mRNAs in plants Trends in Plant Science. 4: 142-148. DOI: 10.1016/S1360-1385(99)01386-2 |
0.463 |
|
| 1998 |
Fennoy SL, Nong T, Bailey-Serres J. Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize. The Plant Journal : For Cell and Molecular Biology. 15: 727-735. PMID 29368809 DOI: 10.1046/J.1365-313X.1998.00249.X |
0.52 |
|
| 1998 |
Manjunath S, Lee CHK, Vanwinkle P, Bailey-Serres J. Molecular and biochemical characterization of cytosolic phosphoglucomutase in maize: Expression during development and in response to oxygen deprivation Plant Physiology. 117: 997-1006. PMID 9662542 DOI: 10.1104/Pp.117.3.997 |
0.404 |
|
| 1998 |
Szick K, Springer M, Bailey-Serres J. Evolutionary analyses of the 12-kDa acidic ribosomal P-proteins reveal a distinct protein of higher plant ribosomes Proceedings of the National Academy of Sciences of the United States of America. 95: 2378-2383. PMID 9482893 DOI: 10.1073/Pnas.95.5.2378 |
0.761 |
|
| 1998 |
Fennoy SL, Nong T, Bailey-Serres J. Transcriptional and post-transcriptional processes regulate gene expression in oxygen-deprived roots of maize Plant Journal. 15: 727-735. DOI: 10.1046/j.1365-313X.1998.00249.x |
0.425 |
|
| 1997 |
Bailey-Serres J, Vangala S, Szick K, Lee CH. Acidic phosphoprotein complex of the 60S ribosomal subunit of maize seedling roots. Components and changes in response to flooding. Plant Physiology. 114: 1293-305. PMID 9276949 DOI: 10.1104/Pp.114.4.1293 |
0.765 |
|
| 1997 |
Fennoy SL, Jayachandran S, Bailey-Serres J. RNase activities are reduced concomitantly with conservation of total cellular RNA and ribosomes in O2-deprived seedling roots of maize Plant Physiology. 115: 1109-1117. DOI: 10.1104/Pp.115.3.1109 |
0.332 |
|
| 1996 |
Bailey-Serres J, Dawe RK. Both 5′ and 3′ sequences of maize adh1 mRNA are required for enhanced translation under low-oxygen conditions Plant Physiology. 112: 685-695. PMID 8883381 DOI: 10.1104/Pp.112.2.685 |
0.409 |
|
| 1996 |
Canel C, Bailey-Serres JN, Roose ML. Molecular characterization of the mitochondrial citrate synthase gene of an acidless pummelo (Citrus maxima) Plant Molecular Biology. 31: 143-147. PMID 8704147 |
0.34 |
|
| 1995 |
Pino ME, Mudd JB, Bailey-Serres J. Ozone-Induced Alterations in the Accumulation of Newly Synthesized Proteins in Leaves of Maize. Plant Physiology. 108: 777-785. PMID 12228510 DOI: 10.1104/Pp.108.2.777 |
0.311 |
|
| 1995 |
Jayachandran S, Bailey-Serres J. Nucleotide sequence of a cDNA for the maize protein synthesis initiation factor 4A Plant Physiology. 108: 1317-1318. PMID 7630958 DOI: 10.1104/Pp.108.3.1317 |
0.762 |
|
| 1995 |
Fennoy SL, Bailey-Serres J. Post-transcriptional regulation of gene expression in oxygen-deprived roots of maize Plant Journal. 7: 287-295. DOI: 10.1046/J.1365-313X.1995.7020287.X |
0.456 |
|
| 1993 |
Fennoy SL, Bailey-serres J. Synonymous codon usage in Zea mays L. Nuclear genes is varied by levels of C and G-ending codons Nucleic Acids Research. 21: 5294-5300. PMID 8265340 DOI: 10.1093/Nar/21.23.5294 |
0.353 |
|
| 1992 |
Bailey-Serres J, Tom J, Freeling M. Expression and distribution of cytosolic 6-phosphogluconate dehydrogenase isozymes in maize. Biochemical Genetics. 30: 233-46. PMID 1616479 DOI: 10.1007/Bf02396214 |
0.579 |
|
| 1990 |
Bailey-Serres J, Freeling M. Hypoxic stress-induced changes in ribosomes of maize seedling roots. Plant Physiology. 94: 1237-43. PMID 16667823 DOI: 10.1104/Pp.94.3.1237 |
0.662 |
|
| 1988 |
BAILEY-SERRES J, KLOECKENER-GRUISSEM B, FREELING M. Genetic and molecular approaches to the study of the anaerobic response and tissue specific gene expression in maize Plant, Cell and Environment. 11: 351-357. DOI: 10.1111/J.1365-3040.1988.Tb01359.X |
0.629 |
|
| 1988 |
Leaver CJ, Isaac PG, Small ID, Bailey-Serres J, Liddell AD, Hawkesford MJ. Mitochondrial Genome Diversity and Cytoplasmic Male Sterility in Higher Plants Philosophical Transactions of the Royal Society B. 319: 165-176. DOI: 10.1098/Rstb.1988.0040 |
0.619 |
|
| 1986 |
Bailey-Serres J, Dixon LK, Liddell AD, Leaver CJ. Nuclear-mitochondrial interactions in cytoplasmic male-sterile sorghum. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 73: 252-60. PMID 24240858 DOI: 10.1007/Bf00289282 |
0.617 |
|
| 1986 |
Bailey-Serres J, Hanson DK, Fox TD, Leaver CJ. Mitochondrial genome rearrangement leads to extension and relocation of the cytochrome c oxidase subunit I gene in sorghum Cell. 47: 567-576. PMID 3022938 DOI: 10.1016/0092-8674(86)90621-5 |
0.635 |
|
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